Microbiology Flashcards
Gram positive stains?
Purple
What stains pink?
Gram negative
What is a pathogen?
Harmful organism
Definition of commensal?
Organism that is part of normal flora
Opportunistic pathogen?
Probably only cause infection in immunocompromised individuals
What is a contaminant?
Organism that has got into culture by accident
Definition of pathogenicity?
Ability of a microorganism to produce disease
Virulence?
Degree of pathogenicity of an organism
How do bacteria replicate?
Binary fission
3 types of atmosphere?
Anaerobic - no O2
Aerobic- O2
Microaerophillic - Reduced O2, enriched CO2
Which type of bacteria produces exotoxin and where?
Gram positive
- Produced inside of cell and exported out
Which type of bacteria produces endotoxin? Where?
Gram negative bacteria
-Part of gram negative bacterial cell wall
Example of moulds and how the reproduce?
Aspergillus
Produce spores and hyphae
Types of fungi?
Moulds
Yeasts
Example of yeasts and how they reproduce?
Candida
Single cells that reproduce by budding
What is candida?
Yeast
What is aspergillus?
Mould
Fact file on streptococcus?
- Appearance
- Gram
- Atmosphere
- Types in test
Aerobic
- Cocci chains
- Gram positive
- Alpha haemolysis = partial = strep pneumoniae, strep viridans
- Beta haemolysis= Complete= Group A Strep, Group B strep
What disease are included in strep pneumoniae?
Meningitis
Pneumonia
What diseases are included in strep viridans?
Endocarditis
Give the 3 types of gram positive bacteria?
Streptococcus
Enterococcus
Staphylococcus
Factfile on enterococcus?
- Gram
- Appearance
- Haemolysis?
Gram positive
- Aerobic
- Cocci chains
- Non-haemolytic
What is the cause of UTIs and normal gut commensal?
Enterococcus
Factfile on staphylococcus?
-Test
appearance
Gram
-Cocci clusters
-Gram positive
-Coagulase positive (golden)= staph aureus
Coagulase negative (white) = Staoh epidermidis
Where is staph aureus found, treatment and what it commonly causes?
- Wounds, infection
- Flucloxacillin
- Common cause of bacteraemia (bac in blood)
Explain the process of fever?
- Antigen attacks macrophage
- Releases cytokines
- Travel to anterior hypothalamus of brain
- Stimulates production of prostaglandin E
- Resets bodies thermal set point
- Body perceives it is cold, shivers to conserve heat
- FEVER- growth of pathogens slows if temperature increases
Physiological use of fever?
If temperature increases the growth of pathogens slows
Diplococci fact file?
Atmosphere
Gram
Example
Gram negative
- Aerobic
- Neisseria gonnhoroea/meningitidis
Coliforms fact file?
Gram negative bacilli
- Aerobic bit also can be anaerobic
- E coli, klebsiella, proteus
Examples of coliforms?
Klebsiella
E coli
Proteus
Examples of Diplococci?
Neisseria gonnhoroea
Neisseria meningitidis
Examples of gut pathogens?
Salmonella
Shigella
E colo 0157
What is the first line AB for coliforms?
Gentamicin
Fact file on strict aerobes?
Gram negative bacilli
Pseudomonas aeruginosa
Legionella pneumophilia
What causes food poisoning?
Campylobacter
What does helicobacter Pylori cause?
Gastritis
Examples of spiral/curved gram negative bacilli?
Campylobacter
Heliobacter pylori
What is haemophillius influenzae?
Small gram negative bacillus
Common cause of chest infection, especially in COPD exacerbations
Example of a gram positive anaerobic bacilli?
Clostridium spp.
What is a gram positive anaerobic bacillus?
Part of normal gut flora
- produces spores and exotoxin that causes severe tissue damage
Examples of gram negative anaerobic bacilli?
Bacteroides spp.
When are bacteroides spp. pathogenic?
When found in environments that arent the gut
First line treatment for anaerobes?
Metrondiazole
Examples of anaerobes?
Clostridium spp.
Bacteroides spp.
Examples of gram negative bacteria?
Coliforms Strict aerobes H. Influenzae Bacteroides Diplococci
Bacteria in TB?
Mycobacteria
- Thick waxy outercoat
- Ziehl neelson stain
What DNA do bacteria have?
Chromosomes and plasmid
3 methods of gene transfer?
Transformation
Conjugation
Transduction
Transformation?
DNA from dead bacteria taken up by living bacteria and incorporated into plasmids or bacterial chromosome
Conjugation?
Sex pilus (fimbria) produced by one bacteria through which plasmid DNA can be transferred
Transduction?
Viruses infecting bacteria can transfer bits of DNA from one bacterium to another
5 I’s of infection?
Ingestion Inhalation Inoculation Intercourse (Mother) to Infant
Standard infection precautions?
All patients all the time
- Wash hands
- Sharps
- Clinical waste
- PPE
Transmission based infection precautions?
Added for known suspected infection
-Eg hasmat suits, facemasks
Antibiotics definition?
Drugs that are used to treat or prevent infection caused by micro-organisms (NOT Antibodies)
Bactericidal?
Kill bacteria
Bacteriostatic?
Inhibit bacterial growth
Antibiotics that work on the cell wall?
Penicillin
Cephalosporins - Ceftriaxone
Glycopeptides - vancomycin
What class of AB is ceftriaxone?
Cephalosporins
How to tell difference between gram negative and positive organisms?
Cell wall has thicker layer of peptidoglycan in gram positive AND a single phospholipid bilayer
Mechanism of penicillins?
Inhibit cell wall synthesis by preventing cross-linking of peptidoglycan subunits
Penicillin is not a beta-lactam AB? True or False
FALSE
Beta-lactam AB
How is penicillin excreted?
Rapidly through kidneys
Examples of penicillin AB’s?
Flucloxacillin, Co-amoxiclav, amoxicillin
What is flucloxacillin used for?
Skin and soft tissue infection
Wound infection
Cellulitis
Mechanisms of cephalosporins?
Inhibit synthesis of cell wall
They are bactericidal
Excreted by kidneys
Examples of beta-lactam AB’s?
Penicillin
Cephalosporins
Risk of cephalosporins?
May induce clostridium difficile infection so their use is limited in hospitals
How are penicillin and cephalosporins the same?
- Bactericidal
- Inhibit cell wall synthesis
- Beta-lactam AB
- Excreted through kidneys (Pen more rapidly)
Mechanism of Glycopeptides?
Cell wall active ABs
Binds to end of growing chain, prevents cross-linking and weakens bacterial cell wall
-Bactericidal
-Excreted in urine
Example of glycopeptide?
Vancomycin
What are glycopeptides only active against?
Organisms with gram positive cell walls
ABs that work on the cell wall?
Glycopeptides
Penicllin
Cephalosporins
Examples of macrolides?
Erythromycin
Clarithromycin
Aziothromycin
Example of a tetracycline?
Doxycycline
Example of aminoglycosides?
Gentamicin
How do macrolides, aminglycosides and tetracyclines work generally?
The attach to bacterial ribosomes
Macrolides and tetracyclines are bacteriocidal/bacteriostatic?
Bacteriostatic
Aminoglycosides are bactericidal/bacteriocidal?
Bactericidal
Mechanism of macrolides?
They pass through cell membranes very easily (lipophillic)
-Excreted via biliary tract
Risk factors of tetracyclines?
Broad spectrum- can destroy intestinal flora
-can permenantly stain teeth of children
How is doxycycline excreted?
Via biliary tract
Mechanism of aminoglycosides?
Inhibit protein synthesis but are bactericidal
Mainly active against gram negative aerobic organisms
eg coliforms, pseudomonas
-Excreted in urine
Risk factors of aminoglycosides?
High toxicity
-Kidney damage and damage of CN VII(deafness and dizziness)
AB’s that act on bacterial DNA?
Metrondiazole
Trimethoprim
Fluroquinolones
Fact file on metrondiazole?
- Mechanism
- Treats
- Interacts with?
- Causes strand breakage of bacterial DNA
- True anaerobic infections
- Interacts with alcohol
What does trimethoprim inhibit?
Bacterial folic acid synthesis
Examples of fluroquinolones?
Ciprofloxacin
Levofloxacin
What do fluoroquinolones do? Mechanism? Excreted?
Prevent supercoiling of bacterial DNA
- Bactericidal
- Excreted in urine
Why are fluorquinolones restricted in their use?
May cause C.difficile
Risk factors of fluoroquinolones?
Weakens tendons
Causes seizures
General side effects of ABs?
Nausea
Vomiting
Diarrhoea
Can affect absorption of oral contraceptives
Side effects of ciprofloxacin?
Tendonitis
Which ABs should be avoided only in the first 3 months of pregnancy?
Metrondiazole
Trimethoprim
Which ABs should be avoided in pregnancy?
Gentamicin
Tetracyclin
Fluoroquinolones
(metrondiazole/trimethoprim first trimester)
How AB resistance occurs?
- Changes in bacterial DNA can causes change in gene product which is a target of ABs
- Destruction of AB, bacteria can code for enzymes that chemically degrade or inactivate the AB
- Increased efflux (pump AB out of cell)
Stages of viral replication?
-Attachment
-Entry - endocytosis
-Uncoating - viral nucleic acid released from capsid
-Nucleic acid and protein synthesis - host ribosomes used or polymerases
-Assembly = nucleic acid and proteins packed together
-Release =
Budding- Viruses released with envelope
derived from host cell membrane
Lysis- Virus accumulates until cell bursts,
kills cell
Virus detection?
PCR
Antigen detection
Examples of neutralising ABs and what they do?
IgG
IgM
Prevent virus binding to cellular receptors
What do cytoxic T lymphocytes do in virus immunity?
Recognise proteins on cell surfaces as foreign and signals infected cell to commit suicide in order to prevent formation of new viruses