Microbiology Flashcards
What is the toxic component of LPS?
Lipid A
What does the pilus/fimbria do and give an example
Mediates adherence of bacteria to cell surface as in meningococcus colonizing the pharyngeal surface
Bacteria with unusual cell membranes/walls
Mycoplasma - membrane contains sterols, no cell wall. Mycobacteria - contain mycolic acid, high lipid content
Bugs that do not gram stain well
These Rascals May Microscopically Lack Color. Treponema, Rickettsia, Mycobacteria, Mycoplasma, Legionella, Chlamydia
Stain for legionella
Silver stain
Organisms seen with giemsa stain
Borrelia, plasmodium, trypanosomes, chlamydia
Organisms seen with PAS stain
Stains glycogen and mucopolysaccharides. Use to diagnose Whipples disease
Organisms seen with silver stain
Fungi and legionella
Culture requirements of h flu
Chocolate agar. Factor V (NAD) and Factor X (hematin). If grown with staph they will provide the needed NAD
Culture requirements of n gonorrhoeae
Thayer-Martin (VPN). Vancomycin, Polymyxin, Nystatin. Or Vanco, Colistin, Nystatin, Trimethoprim
Culture requirements of b pertussis
Bordet-Gengou (potato) agar
Culture requirements of c diphtheriae
Tellurite plate, Lofflers media
Culture requirements of m tb
Lowenstein-Jensen agar
Culture requirements of m pneumoniae
Eatons agar
Culture requirements of lactose-fermenting enterics
Will be pink on MacConkey. E coli also grown on Eosin-Methylene Blue (EMB) and will be green with metallic sheen
Culture requirements of legionella
Charcoal yeast extract agar buffered with cysteine and iron
Culture requirements of fungi
Sabourauds agar
What is another name for polymixin?
Colistin
What allows e coli to spread hematogenously and cause meningitis?
K-1 capsule
Encapsulated bacteria (6)
Strep pneumo, H flu type b, N meningitidis, Salmonella, Klebsiella, group B strep
What vaccines should you give an asplenic patient?
S pneumo, H flu, N meningitidis
Test of choice for encapsulated bacteria
Quellung (will see capsular swelling)
Catalase-positive organisms (5)
S aureus, Serratia, Pseudomonas, Candida, E coli
What is the antigen in the N meningitidis vaccine?
Capsular polysaccharide
Urease positive bugs (8)
Proteus, Ureaplasma, Nocardia, Cryptococcus, H pylori, Klebsiella, Staph saprophyticus, Staph epidermis
Protein A virulence factor
Staph aureus. Binds Fc of Ig. Prevents opsonization and phagocytosis
IgA protease
Cleaves IgA. Secreted by s. pneumoniae, h flu type b, and neisseria
M protein
Group A streptococcus. Helps prevent phagocytosis
Where are exotoxin and endotoxin genes respectively located?
Exotoxins - plasmid or bacteriophage, endotoxin - bacterial chromosome (remember that endotoxins are part of bacterial wall, thus part of bacteria themselves. Similarly the gene is in with bacterial genes)
Heat stability of exotoxins and endotoxins respectively
Exotoxins destroyed rapidly at 60 C (except staph enterotoxin), endotoxins stable at 100 C for 1 hour
Diseases caused by exotoxins and endotoxins respectively
Exotoxins - tetanus, botulism, diphtheria. Endotoxins - meningococcemia, gram negative sepsis
Diphtheria toxin
Inactivates EF-2 and thus inhibits protein synthesis
Exotoxin A
Pseudomonas. Inactivates EF-2 (like diphtheriae toxin) and thus inhibits protein synthesis
Shiga Toxin
Shigella. Inactivates 60S ribosome by cleaving rRNA (like EHEC toxin). Causes GI mucosal damage and triggers HUS
Shiga-like Toxin
EHEC (including O157H7). Inactivates 60S ribosome by cleaving rRNA. Enhances cytokine release, causes HUS but EHEC does not invade host cells (unlike shigella)
What are the properties of EHEC in culture?
Does not ferment sorbitol, does not produce glucuronidase
Heat-labile (cholera-like) toxin
ETEC. Overactivates adenylate cyclase increasing Cl secretion. Watery diarrhea.
Heat-stable diarrhea
ETEC and Yersinia enterocolitica. Overactivates guanylate cyclase. Decreases reabsorption of NaCl and water in gut. Watery diarrhea in ETEC, bloody in y entocolitica (invades)
Edema factor
Bacillus anthracis. Mimics adenylate cyclase (similar to pertussis toxin). Black eschar of cutaneous anthrax
Cholera toxin
Vibrio cholerae. Overactivates adenylate cyclase by permanently activating Gs. Increased Cl secretion. Rice-water diarrhea
Pertussis toxin
Bordatella pertussis. Overactivates adenylate cyclase by disabling Gi. Impairs phagocytosis.
Tetanospasmin
Clostridium tetani. Cleaves SNARE (required for NT release). Prevents release of inhibitory NTs in spinal cord (GABA and glycine). Rigidity and lockjaw
Botulinum toxin
Clostridium botulinum. Cleaves SNARE (required for NT release). Prevents stimulatory (Ach) signals at neuromuscular junction. Flaccid paralysis
Botulinum toxin
Clostridium botulinum. Cleaves SNARE (required for NT release). Prevents stimulatory (Ach) signals at neuromuscular junction. Flaccid paralysis
Alpha toxin
Clostridium perfringens. A phospholipase that degrades tissue and cell membranes. Causes gas gangrene and hemolysis
Streptolysin O
Strep pyogenes. Protein that degrades cell membranes. Lyses RBCs (beta hemolysis). Use ASO in diagnosis of rheumatic fever
Exotoxin A
Strep pyogenes. Superantigen (MHC 2 and TCR linking). Toxic shock syndrome
Toxic shock syndrome toxin (TSST-1)
Staph aureus. Superantigen (MHC 2 and TCR linking). Toxic shock syndrome
Transformation (including bacteria capable of it)
Ability to take up DNA from environment. Strep pneumo, h flu type b, neisseria
Conjugation
F+ to F- (plasmid DNA only) or Hfr to F- (plasmid and chromosomal genes)
Transposition
Transfer of genes between plasmids or between chromosome and plasmid. Plasmid DNA may then move between bacteria
Generalized transduction
Lytic phage infection with accidental packing of bacterial chromosome into viral capsid. Viral transfer
Specialized transduction
Lysogenic phage incorporates and takes bacterial DNA with it when it excises
What toxins are encoded in lysogenic phages (specialized transduction)?
Shiga-like toxin, Botulinum toxin, Cholera toxin, Diphtheria toxin, Erythrogenic toxin of strep pyogenes
Branching gram positive bacteria and what separates them
Actinomyces (anaerobe and not acid fast), Nocardia (aerobe, acid fast)
Catalase positive and negative gram positive cocci
Positive - Staph (clusters), Negative - Strep (chains)
Coagulase positive, catalase positive gram positive cocci
S aureus (beta hemolytic)
Coagulase negative, catalase positive, gram positive cocci
Novobiocin sensitive - staph epidermis, novobiocin resistant - staph saprophyticus
What do staph epidermis tend to infect?
Teflon coated surfaces (due to biofilm formation) such as IVs and other artifical surfaces
Alpha hemolytic catalase negative gram positive cocci
Optochin sensitive - strep pneumo (bile soluble - does not grow in bile). Optochin resistant - Viridans strep (eg strep mutans, insuluble in bile)
Beta hemolytic catalase negative gram positive cocci
Group A (Bacitracin sensitive) - Strep pyogenes (impetigo). Group B (bacitracin resistant) - Strep agalactiae
Gamma hemolytic catalase negative gram positive cocci
Enterococci (e faecalis) - grow in 6.5 pct NaCl and bile. Nonentercocci (strep bovis) - grow in bile but not 6.5 pct NaCl
Gram positive mnemonics
Staph (novobiocin) - On offices STAPH retreat there was NO StRES. Strep (optochin) - OVRPS. Strep (bacitracin) - B-BRAS
Hemolysis of listeria monocytogenes
Beta
What is the most common site of staph aureus colonization?
Anterior nares
What is strep pneumo the most common cause of?
Meningitis, Otitis media in children, Pneumonia, Sinusitis
Color of sputum in strep pneumo infection
Rust colored
Strep viridans infections
Dental caries (strep mutans), subacute bacterial endocarditis of damaged valves (strep sanguis)
What infection precipitates rheumatic fever?
Group A strep (strep pyogenes)
What is done to prevent group B strep infection in newborns?
Pregnant women screened at 35-37 weeks. Positive patients receive intrapartum penicillin
What do enterococci cause?
UTI and subacute endocarditis. Are normal colonic flora. Are penicillin G resistant
Strep bovis
Normal gut bacteria. Can cause bacteremia and subacute endocarditis in colon cancer patients
Gram positive rods with metachromatic (blue and red) granules and Elek test for toxin
Cornyebacterium diptheriae
Gram positive rods with metachromatic (blue and red) granules and Elek test for toxin
Cornyebacterium diptheriae
What is seen in diphtheriae pharyngitis
Grayish-white pseudomembrane and lymphadenopathy
What is needed to prevent clostridium tetani infection and what is the implication of this?
IgG. Breastmilk will not cut it. Vaccinate early
Path tetanospasmin travels
Wound to motor neuron axon to spinal cord
Toxin A and Toxin B
C difficile. A (enterotoxin) - binds brush border of gut. B (cytotoxin) - destroys enterocyte cytoskeleton, causing pseudomembranous colitis
How do you diagnose C difficile colitis?
Detection of Toxin A and/or B in the stool
Cause and treatment of C difficile
Commonly caused by clindamycin or ampicillin. Treat with metronidazole or oral vanco
What is given to prevent neonatal tetanus?
A maternal vaccine during pregnancy
Only bacterium with a polypeptide capsule (contains D-glutamate)
Bacillus anthracis
Fever, pulmonary hemorrhage, mediastinitis, shock
Pulmonary anthrax
Microscopy of anthrax infection
Long chains (medussa head appearance)
People in what profession are susceptible to anthrax infection?
Woolsorters
Culture appearance of listeria monocytogenes
Narrow zone of beta hemolysis on sheep blood agar
Where does listeria monocytogenes live?
Facultative intracellular
Amnioitis, septicemia, and spontaneous abortion. Or granulomatosis infantiseptic. Or neonatal meningitis. Or meningitis in immunocompromise. Or mild gastroenteritis (healthy adult)
Listeria
Treatment for listeria
Usually self-limited. Ampicillin in infants and immunocompromised
Treatment for branching gram positive rods
SNAP. Sulfa for Nocardia, Actinomyces use Penicillin
Prophylactic treatment for MAIC in AIDS patients
Azithromycin
Fevers, weight loss, weakness, hepatosplenomegaly
MAI
Treatment for leprosy
Dapsone (toxicity is hemolysis and methemoglobinemia)
Outcomes of leprosy
Lepromatous (Th2 response), tuberculoid (Th1 response)
Gram negative cocci
Maltose fermenter - N meningitidis. Maltose nonfermenter - N gonorrhoeae
Gram negative coccoid rods
H flu, pasteurella, brucella, bordatella pertussis
Gram negative comma shaped (oxidase positive)
Grows at 42 C - campylobacter jejuni. Grows in alkaline media - vibriocholerae
Gram negative lactose fermenting rods
Fast fermenters - klebsiella, e coli, enterobacter. Slow fermenters - citrobacter, serratia, others
Gram negative non lactose fermenting rods
Oxidase negative - shigella (no H2S production), salmonella and proteus (H2S production). Oxidase positive - pseudomonas
Why dont you get lasting imunity from gonoccocal infection?
Due to rapid antigenic variation of pilus proteins (which is also why we dont have a vaccine)
What does meningococcus cause?
Meningococcemia, meningitis, and Waterhouse-Friderichsen syndrome
What does gonococcus cause?
Gonorrhea, septic arthritis, neonatal conjuctivitis, PID, and Fitz-Hugh-Curtis syndrome
What does meningococcus have that is analogous to LPS of enteric gram negatives?
LOS
Prophylaxis of meningococcus close contacts
Rifampin
Treatment of gonococcus and meningococcus respectively
Gonococcus - cetriaxone, meningococcus - ceftriaxone or penicillin G
What does h flu cause?
Epiglottitis (cherry red), Meningitis, Otitis media, and Pneumonia
Transmission of h flu
Aerosol
Treatment and prophylaxis for h flu
Ceftriaxone (treatment) and rifampin (close contact prophylaxis)
What is contained in the HiB vaccine?
PRP component of the HiB capsule conjugated to diphtheria toxoid (give between 2 and 18 months of age)
Test of choice for legionella
Urine assay for antigen
Transmission and habitat of legionella
Aerosol. Water source habitat
Treatment for legionella
Erythromycin
What presentation in a pneumonia case would suggest legionella over strep pneumo?
Pneumonia + GI + Neuro symptoms
High fever in smoker with diarrhea, confusion, cough, and chest pain
Legionella
Erythema gangrenosum
Necrotic skin condition due to pseudomonas exotoxin
What is pseudomonas associated with
Wound and burn infection, pneumonia (esp in CF), sepsis (black lesions on skin), swimmers ear, UTI, drug users and diabetic osteomyelitis, hot tub folliculitis, malignant otitis externa in diabetics
Smell of pseudomonas
Grape like odor
Treatment for pseudomonas
Aminoglycoside plus extended-spectrum penicillin (piperacillin, ticarcillin)
Most important virulence factor in e coli UTI
Fimbriae
E coli diarrhea in children
EPEC
Which e coli does not ferment sorbitol?
EHEC
Red currant jelly sputum
Klebsiella
Contrast DIC with TTP-HUS
1) Pts bleed in DIC. 2) Only platelets activated in TTP-HUS. 3) PTT and PT prolonged in DIC, 4) Low fibrinogen and increased FDP in DIC
Which populations are more common in TTP and HUS respectively
TTP - pts with mainly CNS symptoms. HUS - children with renal failure and mild CNS symptoms
Main differences betweeon salmonella and shigella
Salmonella have flagella and can disseminate hematogenously and produce H2S
What may prolong symptoms in salmonella infection?
Antibiotics
Rose spots on abdomen, fever, headache, diarrhea.
Salmonella typhi (typhoid fever). May remain in gallbladder in carrier state
How do shigella enter our cells?
They first enter antigen sample M (microfold) cells, then spread to epithelial cells
How do Shigella move?
Actin polymerization (they do not have flagella like salmonella do)
Most common cause of bloody diarrhea
Campylobacter jejuni. This is especially true in children
Transmission of campylobacter
Fecal-oral through poultry, meat, unpasturized milk
Common antecedent to Guillain-Barre
Pet feces (puppies), contaminated milk, or pork
Diarrhea outbreaks in day care centers. Can also cause mesenteric adenitis which can mimic Crohns or appendicits
Yersinia entercolitica
Spirochetes
Borrelia, Leptospira, Treponema
Flulike symptoms, jaundice, photophobia with conjunctivitis.
Leptospirosis. Found in water contaminated with animal urine, prevalent among surfers and in the tropics
Severe jaundice and azotemia, fever, hemorrhage, anemia
Weils disease (icterohemorrhagic leptospirosis) - liver and kidney dysfuntcion from severe leptospira infection
Stages of lyme disease
1 - erythema migrans, flulike symptoms. 2 - Bells palsy, AV nodal block. 3 - chronic monoarthritis and migratory polyarthritis
Treatment for lyme
Doxycycline, ceftriaxone
Stages of syphilis
1 - painless chancre, 2 - rash, condylomata lata. 3 - Gummas, aoritis, neurosyphilis, argyll-robertson pupil
Saber shins, saddle nose, CN 8 deafness, Hutchinsons teeth, mulberry molars
Congenital syphilis
Argyll-Robertson pupil
Reactive to accomodation but not light
Causes of VDRL false positives
VDRL. Viruses (mono, hepatitis), Drugs, Rheumatic fever, Lupus and leprosy
Histologic appearance of brucellosis and what is the source?
Chronic caseating granulomas similar to Tb endocarditis. Unpasteurized dairy (common in cattle ranchers)
Source and organism of Q fever
Coxiella burnetii. Spores from tick feces and cattle placenta
Source and organism of ehrlichiosis
Ehrlichiosis chaffeensis. Lone star tick
Vector for francisella tularensis
Ticks, rabbits, deer fly
Vector for pasteurella multocida
Animal bite, cats, dogs
Organism and vector for epidemic typhys
Rickettsia prowazekii. Louse
Vector and organism for endemic typhyus
Rickettsia typhi. Flease
Characteristic finding in garnderella vaginalis infection
Fishy odor on addition of kOH
What infection is associated with sexual activity but is not an STD?
Garnerella overgrowth
Clue cells
Gardnerella overgrowth. Vaginal epithelial cells covered with bacteria
Treatment for gardnerella
Metronidazole
Where do Rickettsia live and what do they need to survive?
Intracellularly. Need CoA and NAD+
Rash starting centrally and spreading out sparing palms and soles
Epidemic typhys. R prowazekii carried by human body louse
Headache, fever, rash (vasculitis) starting on palms and soles
Rickettsia (but not typhus type. Typhus rash starts on trunk and spreads out)
Rickettsial pneumonia with no rash, no vector, and negative Weil-Felix
Q fever (coxiella burnetti). Organism can survive outside for a long time
Weil-Felix
Mixing pts serum with proteus antigens and antirickettsial antibodies will cross react with Proteus O antigen and agglutinate (if they have had a rickettsial infection)
Rash on palms and soles migrating to wrist, ankles, then trunk, headache, fever
Rocky mountain spotted fever
In what infections is palm and sole rash seen?
Coxsackie A (hand foot and mouth), RMSF, Syphilis
Two main forms in chlamydia life cycle
Elementary body (infectious), and Reticulate body
Lab diagnois of chlamydiae
Cytoplasmic inclusions on Giemsa or floresecent antibody stained smear
Chlamydia trachomatis serotypes
ABC - blindness, africa, chronic. D-K - urethritis, PID, ectopic, neonatal pneumonia and conjunctivitis. L1L2L3 - Lymphogranuloma venerum
Cause of atypical pnuemonia, high titer of cold aggultinins (IgM), grown on Eatons agar
Mycoplasma pneumoniae
Treatment for mycoplasma pneumoniae
Tetracycline or erythromycin (do not use penicillins as they have no cell wall)
Atypical pneumonia outbreak in military recruits or prisons
Mycoplasma pneumoniae
Main fungus in New England and mid-atlantic
Blastomyces
Main fungus in midwest
Histoplasma
Main fungus in southwest
Coccidiodes
Main fungus in latin america
Paracoccidiodes
Symptoms of histoplasmosis
pneumonia
Dimorphic fungus in bird or bat droppings
Histoplasmosis
Treatment for systemic mycoses
Fluconazole or ketoconazole (local), amphotericin B (systemic)
Dimorphic broad based buds
Blastomyces
Symptoms of blastomycosis
Inflammatory lung disease, can disseminate to skin and bone. Granulomatous nodules
Symptoms of coccidiodomycosis
Pneumonia and meningitis, can disseminate to bone and skin
Dimorphic fungus which looks like a ball of grapes
Coccidiodes
Which systemic mycoses can become a spherule filled with endospores (much larger than an RBC)?
Coccidiodes
Dimorphic fungus with captains wheel appearance
Paracoccidiodes
How does malassezia furfur affect skin pigment?
Degrades lipids, which produces acids that damage melanocytes and cause hypopigmentation or hyperpigmented patches
What kind of weather is conducive to malassezia furfur?
Hot, humid weather