Microbiology Flashcards
Bacteria classification
• shape:
— bacilli – rod shaped; — cocci – spherical;
• Gram staining:
— Gram positive – blue; — Gram negative – pink;
• growth requirements:
— aerobic;
— anaerobic
— facultatively anaerobic
Gram positive cocci: Staphylococci
Staphylococci
These tend to be arranged in grape-like clusters. They may be divided into coagulase positive and coagulase negative. Coagulase positive staphylococci are called Staph. aureus. They are responsible for the following:
- Superficial infections; e.g. boils, abscesses, styes, conjunctivitis, wound infections
- Deep infection; e.g. septicaemia, endocarditis, osteomyelitis, pneumonia
- Food poisoning
- Toxic shock syndrome
Gram positive cocci: Coagulase negative staphylococci
Coagulase negative staphylococci, e.g. Staph. epi- dermidis are of lower pathogenicity and rarely cause infection in healthy people. They form part of the nor- mal skin flora. However, they may be responsible for infection in association with foreign bodies, e.g. pros- thetic cardiac valves, intravenous lines, continuous ambulatory peritoneal dialysis, and vascular grafts. These infections may lead to septicaemia and endo- carditis and become life threatening. Their treatment with antibiotic alone is often inadequate, and the pros- thesis may require removal.
Staph. saprophyticus, a commensal, may cause urinary tract infections in sexually active women.
Antibiotic sensitivity
Staph. aureus appears in resistant forms, especially in hospital practice. Recently there has been an increase in MRSA (methicillin-resistant Staph. aureus) which is now the predominant hospital strain and presents a major threat to surgical patients. This is resistant to all penicillins and cephalosporins.
Antibiotics that may be active against Staph. aureus include:
• penicillin (80% of hospital strains are resistant); • flucloxacillin (active against beta-lactamase- producing organisms but not MRSA); • erythromycin; • clindamycin; • fusidic acid; • cephalosporins; and • vancomycin.
Streptococci
These are spherical or oval cocci occurring in chains. They are classified by their ability to lyse red blood cells present in blood containing culture medium. They are further subdivided by serology, on the basis of polysaccharide antigens present on their surface, into Lancefield groups. The species responsible for sepsis are the beta-haemolytic strains where colonies completely lyse the blood cells on a culture plate, causing a colourless, clear, sharply defined zone. They include Lancefield groups A, B, C and G.
Lancefield Group A
Strep. pyogenes causes: • tonsillitis and pharyngitis; • peritonsillar abscess (quinsy); • otitis media; • mastoiditis; • wound infection with cellulitis and lymphangitis; • erysipelas; and • necrotising fasciitis. Antibiotic sensitivity Penicillin is the drug of choice. All strains are sensitive. In patients allergic to peni- cillin, erythromycin is the drug of choice, but some strains are resistant.
Lancefield Group D
‘Viridans’ streptococci These show alpha haemolysis on blood-containing culture plates with a green (hence the term viridans) discoloration around the colonies. Most human strains are commensals of the upper
respiratory tract and are of low pathogenicity. They are responsible for endocarditis. ‘Strep. milleri’ may be classified with this group but it is now more often clas- sified with pyogenic streptococci. It may cause liver, lung or brain abscesses.
Streptococcus pneumoniae (Pneumococcus) This has a polysaccharide capsule, which is correlated with its virulence, probably because it prevents or inhibits phagocytosis. Eighty-four capsular types are recog- nized. Pneumococci are often paired on gram stain. The organism is responsible for the following
• lobar pneumonia
• chronic bronchitis
• meningitis
• sinusitis
• conjunctivitis
• septicaemia (especially in splenectomised patients).
Antibiotic sensitivity All strains are sensitive to peni- cillin and erythromycin.
Enterococci
Enterococcus faecalis is the most surgically important in this group. It may cause urinary tract infections and abdominal wound infections and may be isolated from bile in acute cholecystitis. Enterococci are usually sen- sitive to ampicillin, moderately resistant to penicillin, and resistant to cephalosporins.
Gram positive rods
Anaerobic Gram positive rods are mainly soil sapro- phytes but a few are pathogens. The surgically import- ant ones include species which produce powerful toxins, e.g. Clostridium perfringens (gas gangrene), C. tetani (tetanus), C. botulinum (botulism) and C. difficile (diarrhoea in association with antibiotic- induced colitis).
Gram negative bacilli
This is a large group of micro-organisms of surgi- cal importance. They may be divided into facultative anaerobes, e.g. E. coli and Klebsiella, and aerobes, of which Pseudomonas is the most commonly encoun- tered in surgical practice.
Facultative anaerobes (Coliforms): E.Coli
Escherichia coli
This is a normal inhabitant of the human intestine. Some strains produce powerful toxins. E. coli is an important cause of sepsis and diarrhoea. Examples of sepsis include:
• UTIs;
• wound infection, especially after surgery on the
lower gastrointestinal tract;
• peritonitis;
• biliary tract infection; and
• septicaemia.
Examples of diarrhoeal illnesses include:
• infantile gastroenteritis;
• traveller’s diarrhea; and
• haemorrhagic diarrhoea, e.g. haemolytic uraemic
syndrome.
Facultative anaerobes (Coliforms): Klebsiella
Klebsiella Klebsiella spp inhabit the human intestine. Some strains are saprophytic in soil, water and vegetation. They are responsible for: • UTIs; • septicaemia; • endocarditis; and • pneumonia (rare). Proteus Proteus spp. are responsible for: • UTIs; • wound infections, e.g. burns, pressure sores; and • septicaemia.
Facultative anaerobes (Coliforms): Salmonella
They inhabit animal gastrointestinal tract. They are pre- dominantly animal pathogens which can cause disease in humans. Salmonella typhi and Salmonella paratyphi differ from other species in that man is the only natural host. Foodstuffs from animal sources are the usual source of transmission of infection. They are responsible for:
• enteric fever, typhoid or paratyphoid; these are due to S. typhi and S. paratyphi A, B, C;
• gastroenteritis (food poisoning), usually due to S. enteritidis or S. typhimurium;
• osteomyelitis (rare); and • septic arthritis (rare).
S. typhi may survive in symptomless carriers and persist in the gall bladder. Faecal carriage may occur by contamination with bile, and epidemics may occur especially if the carrier is a food handler.
Facultative anaerobes (Coliforms): Shigella
They are intestinal parasites in man. They cause dysen- tery. Sh. dysenteriae which produces exotoxins causes the most severe illness. Other shigellae may cause a milder form of dysentery, Sh. sonnei being the most common cause in the UK.
Facultative anaerobes (Coliforms): Yersinia
Yersinia
These are animal parasites which occasionally cause disease in humans. Yersinia pseudotuberculosis and Yersinia enterocolitica are the most common, causing food poisoning and mesenteric adenitis.
Facultative anaerobes (Coliforms): Other enterobacteria
These include enterobacter, citrobacter, providencia, morganella and serratia. They are human and animal intestinal residents but some strains are saprophytes. Moist hospital environments may act as reservoirs. They are often multiresistant to antibiotics. They may cause the following:
- UTIs;
- wound infections after abdominal surgery;
- respiratory infections in hospitalised patients; and • septicaemia.
Facultative anaerobes (Coliforms): Antibiotic sensitivity
Since many strains are now resistant to commonly- used antibiotics, sensitivity should be determined. In systemic infection, cephalosporins, gentamicin, ciprofloxacin or carbapenems may be used. In UTIs trimethoprim, amoxicillin and nitrofurantoin may be used for sensitive organisms.
Aerobic Gram negative bacilli: Pseudomonas aeruginosa
This inhabits human and animal gastrointestinal tracts, water and soil. The organism survives in moist environments in hospitals and may also survive in aqueous antiseptics and other fluids. It is an important cause of hospital-acquired infections. It particularly affects patients with serious underlying conditions, e.g. burns and malignancy, or as a result of therapeutic interventions, e.g. urinary catheters, endotracheal tubes. It is a frequent cause of infection in the immuno- compromised patient. It is a pathogen in the following conditions:
• UTIs, especially within indwelling catheters;
• burns;
• wound infections;
• septicaemia;
• pressure sores;
• venous stasis ulcers;
• chest infections, especially patients on mechanical
ventilation and those with cystic fibrosis; and
• eye infections (it may contaminate certain types of eye drops).
Aerobic Gram negative bacilli: Antibiotic sensitivity
The presence of Ps. aeruginosa is not necessarily an indication for antibiotic therapy especially if it is isolated from a superficial site. Clinical and bacterio- logical assessment in the individual patient is appro- priate before prescribing antibiotics. Ps. aeruginosa is resistant to most common antibiotics. The most suitable antibiotics are aminoglycosides, ciprofloxacin, ceftazidime, and piperacillin/tazobactam.
Other Gram negative bacilli: Campylobacter
These are curved or spiral rods which are micro- aerophilic. They are found in various animal species, including chickens, domestic animals and seagulls. Campylobacter is the most common cause of bacterial food poisoning in the UK.
Other Gram negative bacilli: Haemophilus influenzae
This is mainly found in the respiratory tract, often as part of the normal flora but may also cause respiratory dis- ease, especially community-acquired respiratory disease. It exists in non-capsulated and capsulated strains.
Non-capsulated strains are responsible for exacer- bation of chronic bronchitis and bronchiectasis. Capsulated strains often cause severe infections in young children, e.g. meningitis, acute epiglottitis, osteomyelitis, arthritis and orbital cellulitis. Septicaemia may occur especially as part of postsplenectomy sepsis. A vaccine is available against H. influenzae type B (HiB).
Antibiotic sensitivity
These are usually sensitive to amoxicillin, tetracycline, cephalosporins (second and third generations) and trimethoprim. Chloramphenicol should be reserved for severe infections, e.g. meningitis and acute epiglottitis.
Other Gram negative bacilli: Pasteurella multocida
This is a small ovoid gram negative bacillus. It inhabits the respiratory tract of many animals, notably dogs and cats. In man it may cause septic wounds after animal bites. It is usually sensitive to penicillin, tetra- cycline, erythromycin and aminoglycosides.
Penicillins: Benzyl penicillin
This is active against streptococci, pneumococci, clostridia, N. gonorrhoea and N. meningitidis. Few staphylococci are now sensitive. The main surgical indications are for the prophylaxis of gas gangrene and tetanus and for streptococcal wound infections. It may be given parenterally, either i.v. or i.m.