MICRO: Antimicrobials 1 Flashcards
Give 3 examples of selective targets of antibiotics.
- Peptidoglycan cell wall
- Inhibition of bacterial protein synthesis e.g. ribosomes
- DNA gyrase and other prokaryote-specific enzymes
Give 2 classes of antibiotics invovled in inhibition of cell wall synthesis.
- beta lactams
- glycopeptides
Give 3 examples of beta-lactam antibiotics.
- penicillins
- cephalosporins
- carbapenems
Give 2 examples of glycopeptides.
- vancomycin
- teicoplanin
Describe the cell walls of gram +ve and gram -ve bacteria.
- Most bacteria have a cell wall - those that do not are atypical organisms such as chlamydia or mycobacteria
- The cell is made up of peptidoglycan (PTG)
- thick in Gram positive
- thinner in Gram negative
- Between the peptidoglycan precursors, there are glycosidic and peptide bonds which gives the bacterial cell wall its rigidity and protects the bacteria from osmotic pressure, being lysed.
- Gram -ves have an outer membrane which can stop some antibiotics - this is a reason gram negatives tend to be more antibiotic resistant and are harder to treat

What are transpeptidases also known as? What is their role in the cell wall?
penicillin binding proteins - involved in terminal stages of cell wall synthesis (form strong bonds between NAM + NAG peptidoglycan precursors to form a rigid cell wall)
How do beta-lactam antibiotics act?
inhibition of transpeptidases –> daughter cell walls are weak and lyse = BACTERICIDAL
beta-lactams are a STRUCTURAL ANALOGUE of the enzyme substrate

Which types of bacteria are beta-lactams most and least effective against (in general)?
- Active against rapidly dividing bacteria- if the bacteria are not dividing, it will not work (i.e. in the stationary phase)
- Ineffective against bacteria that lack a PTG cell wall
What are the 4 classes of beta-lactam containing antimicrobial structures?
- Penicillins
- Cephalosporins
- Carbapenems
- Monobactam
They all have a beta-lactam ring structure.
Beta lactams can go “BACk to the PEN where the SPORes are ChILLIN”

What chance is there of allergy to cephalosporins in a patient allergic to penicillins?
~5%
Give 4 examples of penicillins.
- Amoxicillin
- Flucloxacillin
- Piperacillin
- Clavulanic acid and tazobactam
- Augmentin/co-amoxiclav
What is tazocin and what is its use?
Tazobactam + piperacillin = tazobactam
Tazobactam protects piperacillin from enzymatic breakdown by beta-lactamases
Which combination helps amoxicillin retain coverage against E coli?
Augmentin/co-amoxiclav - Clavulanic acid protects amoxicillin from enzymatic breakdown
NB: lots of E coli are now resistant to amox and S. aureus/other gram -ves produce beta-lactamses which also break it down
Compare the actions of penicillin, amoxicillin, flucloxacillin and piperacillin.
-
Penicillin
- Active against Gram +ve organisms (Streptococci, Clostridia)
- Broken down by beta-lactamase
-
Amoxicillin
- Broad spectrum penicillin, extends coverage to Enterococci and Gram -ve organisms
- Now lots of E. coli are resistant
- Broken down by beta-lactamase
-
Flucloxacillin
- Similar to penicillin although LESS ACTIVE
- STABLE to b-lactamase produced by S. aureus
-
Piperacillin
- Similar to amoxicillin, broad spectrum, extends coverage to Pseudomonas and other non-enteric Gram -ves
- Broken down by beta-lactamase
- Used for HAI
What are the advanatages of clavulanic acid and tazobactam?
They are beta-lactamase inhibitors
Which beta-lactam is the most active?
Penicillin is the MOST ACTIVE b-lactam antibiotic
Give an example of 1st, 2nd and 3rd gen cephalosporins. Compare the groups.
- Increasing activity against gram -ve bacilli
- 2nd generation- better for +ve organisms, good activity towards E. coli
- 3rd generation- better towards -ve organisms, weaker towards +ve organisms, used for HAP (especially Pseudomonas)

Which cephalosporin is associated with C diff infection?
Ceftraixone (3rd generation)
Which cephalosporin is stable to beta-lactases with similar coverage to co-amoxiclav but less stable against anaerobes?
Cefuroxime
Which cephalosporin has good anti-pseudomonas activity?
ceftazidime
Which enzyme confers resistance to all cephalosporins?
extended spectrum beta-lactamase producing organisms (ESBLs)
Which beta-lactams are stable to ESBL organisms?
Carbapenems
Give an example of carbapenems. Which organisms have shown resistance to carbapenems?
Meropenem, Imipenem, Ertapenem
Really broad spectrum, covering almost everything. But some organisms like Acinetobacter and Klebsiella have shown resistance with carbapenemase production.
What is a common use of beta-lactams? What are the cautions for beta-lactam use?
Common use - meningitis; will not cross intact BBB but when inflamed can cross. Relatively non toxic
Cautions:
- Renally excreted
- Short t1/2 so prescribe multiple times a day
- Cross-allergenic - 10% cross reactivity of penicillins with cephalosporins/carbapenems
Can glycopeptides be used against gram -ves? Why?
No - large molecules so unable to penetrate the outer cell wall.
But active against gram +ve organisms
Which infection are glycopeptides useful for? Why should you monitor drug levels?
- Serious MRSA infections - treated IV
- C. difficile - PO vancomycin can be used
They are nephrotoxic - monitor for accumulation
Are glycopeptides bactericidal?
Yes slowly. They are cell wall synthesis inhibitors
What is the mechanims of action of glycopeptides?
- Vancomycin and Teicoplanin bind to the end of this chain (on the right) and stop the transpeptidase from binding and CANNOT form the peptide cross links
- They also stop the transglycosidase from binding so get no glycosidic bonds too
- So get a weakened cell wall and similarly, the daughter cells will lyse.
- = slowly bactericidal

Give 5 examples of inhibitors of protein synthesis.
- Aminoglycosides- e.g. Gentamicin, Amikacin, Tobramycin
- Tetracyclines- e.g. Doxycycline
- MLS group - Macrolides- e.g. Erythromycin / Lincosamides- e.g. Clindamycin / Streptogramins- e.g. Synercid (NOT used anymore)
-
Chloramphenicol
- Used in CAP
- May use for meningitis and anaphylaxis
- Oxazolidinones- e.g. Linezolid
What does the clinical effect of aminoglycosides largely depend upon?
They have concentration-dependent bactericial activity - so want a high concentration early on for better clinical effect and outcome
What are the cautions with using aminoglycosides?
- Nephrotoxicity
- Ototoxicity
monitor levels
- Most will have 1 dosing a day- enough to trough and not reach toxicity but monitor accumulation
- High trough levels over 24-48 hours are associated with toxicity
- Okay to give 1 big dose first (as this is where the physical effect comes from) but then follow policies for monitoring toxicity
Are aminoglycosides useful for abscesses? Why?
Aminoglycosides are inhibited by low pH and so are not very effective in abscesses
Give 2 examples of aminoglycosides and their activity.
- Gentamicin and tobramycin particularly active against Pseudomonas aeruginosa
- They also have a SYNERGISTIC combination with b-lactams
- NO activity against anaerobes
What is the MOA of aminoglycosides?
-
Prevent elongation of the polypeptide chain
- Bind to the 30S subunit of the ribosome and prevent elongation
- Cause misreading of the codons along the mRNA

What types of organisms are tetracyclines especially effective against?
Broad-spectrum agents with activity against IC pathogens (CRaMe.g. chlamydiae, rickettsiae and mycoplasma) as well as most conventional bacteria
*these have a cell wall so penicillins are ineffective
What is the MOA of tetracyclines? How do they kill bacteria?
- Reversibly binds to the ribosomal 30S subunit
- Prevents binding of aminoacyl-tRNA (transfer RNA) to the ribosomal acceptor site, so inhibiting protein synthesis
- They are not bactericidal but BACTERIOSTATIC -

Which new tetracycline is not affected by most resistance mechanims that usually affect tetracyclines?
Tigecycline - so active against most MDR
When should tetracyclines not be given?
- Children
- Pregnant women
= they can be deposited in growing bone and discolour growing teeth
= can also cause a light sensitive rash so avoid sun
What is the MOA of macrolides?
- Bind to the 50S subunit of the ribosome
- Interfere with translation
- Stimulate dissociation with peptidyl-tRNA
- Inhibit protein synthesis

Which antibiotics can be given against:
- atypical pneumonia e.g. mycoplasma?
- penicillin allergic patients with staph infection ?
Both MACROLIDES
They have minimal activity against gram -ve organisms due to their outer membrane but useful for:
- Staphylococcus + Streptotoccus in penicillin allergic patients
- Campylobacter/legionella pneuumophilia/mycoplasma
What are the advatages of newer macrolides?
Clarithromycin/azithromycin have improved pharamacological properties:
- longer t1/2 so less frequent dosing
- azithromycin has some gram -ve activity and can be used for Salmonella typhi or bronchiectasis in CF patients
Why are macrolides often combined with beta lactams e.g clindamycin and flucloxacillin?
To inhibit protein synthesis when bacteria make toxins in the stationary phase of growth (when beta-lactams are not effective) E.g. in Group A Streptococcus and necrotising fasciitis
What is the MOA of chloramphenicol?
- Binds to the peptidyl transferase of the 50S ribosomal subunit and inhibits the formation of peptide bonds during translation
- BACTERIOSTATIC

Why is chloramphenicol rarely used/what are its risks?
- Rarely used (apart from the eye preparations and special indications) because of risk of:
- Aplastic anaemia
- Grey baby syndrome in neonates due to inability to metabolise drug
Which clinical situation is chloramphenicol often used for?
Penicillin allergic patients with meningitis (because they have activity against pneumococcus and meningococcus)
Sometimes for CAP as the side-effects are less problematic than beta-lactams
What is the MOA of Oxazolidinones (Linezolid)?
- Binds to the 23S component of the 50S subunit to prevent formation of a functional 70S initiation complex (required for the translation process to occur)
- Novel MoA and NOT derived from a natural source
Which organisms are oxazolidinones effective against?
Gram +ve including MRSA and VRE
NOT effective against most gram -ves
What are the side-effects of oxazolidinones?
Thrombocytopeanie with prolonged use (2-4 weeks)
Optic neuritis (>4 weeks)
Resistance is rare
What class are ciprofloxacin, levofloxacin and moxifloxacin? Compare their actions.
Fluoroquinolones
- Ciprofloxacin- good for Gram -ves including P. aeruginosa
- Levofloxacin- in the middle
- Moxifloxacin- good for Gram +ves (inc. pneumococcus) but worse for Gram-ves
Name 2 classes of inhibitors of DNA synthesis. What is their general action?
Bind to topoisomerase and DNA gyrase
- Quinolones e.g. ciprofloxacin
- Nitromidazoles e.g. metromidazole
What is the MOA of fluoroquinolones?
Act on the a-subunit of DNA gyrase predominantly, but together with other antibacterial actions, are essentially bactericidal.
What organisms are fluoroquinolones effective against?
Broad antibacterial activity especially gram -ve e.g. pseudomonas aeruginosa
Newer agents (levo/moxi) have increased gram +ve activity and IC e.g. against chlamydia and legionella, pneumococcus and haemophilus
What are the side effects of fluoroquinolones/quinolones?
- Tendonitis
- C. diff outbreaks
Other:
- Resistance - 25% of E coli
- Caution in hypotensive/tachycardic patients
What route of administration is good for quinolones?
PO - well absorbed and good bioavailability
What is the MOA of nitromidazole?
Under anaerobic conditions, an active intermediate is produced which causes DNA strand breakage
Rapidly bactericidal + resistance is rare
What are… useful for treating clinically?
- Quinolones
- Nitromidazoles
- UTI, pneumonia, atypical pneumonia, bacterial gastroenteritis
- UTI - nitrofurans are related compounds (e.g. nitrofurantoin); not absorbed systemically
What organisms are nitromidazoles effective against?
Active against anaerobic bacteria and protozoa (e.g. Giardia)
Name a class of inhibtors of RNA synthesis and give 2 examples.
Rifamycins e.g. rifampicin, rifabutin
What is the MOA of rifamycins? What organisms are they useful against?
Inhibits protein synthesis by binding to DNA-dependent RNA polymerase thereby inhibiting initiation
Bactericidal
Active against certain bacteria, including Mycobacteria and Chlamydiae
What is the only way that rifampicin should be used and why?
IN COMBINATION with another antibiotic as resistance develops rapidly
except for short-term prophylaxis e.g. against meningococcal infection otherwise never use alone
What is the MOA of resistance against rifampicin?
- ALTERED TARGET
- Resistance due to chromosomal mutation
- This causes a single AA change in the b-subunit of RNA polymerase which then fails to bind to Rifampicin
Which infections is rifampicin useful for clinically?
- TB
- complex prosthetic joint infections + endocarditis (has biofilm disrupting activity)
Name two drugs which are membrane toxins.
daptomycin
colistin
What are ths uses of daptomycin? What is its MOA? What can be used as an alternative for?
- Cyclic lipopeptide
- Gram +ve ONLY [utility against enterococci is limited and resistance can develop. Good activity mainly against S. aureus]
- MRSA and VRE as an alternative to linezolid and Synercid
What are the uses of colistin? What is its MOA?
- A polymyxin antibiotic that destroys the outer cell membrane of Gram -ve organisms including;
- P. aeruginosa,
- Acinetobacter baumannii
- Klebsiella pneumoniae.
- Particularly useful for MDR carbapenemase producing organisms
Cons:
- It is not absorbed by mouth
- Nephrotoxic
- Should be reserved for use against multi-resistant organisms
Give 2 examples of inhibitors of folate metabolism.
Sulfonamides and Diaminopyrimidines (e.g. trimethoprim)
What is the MOA of sulfonamides/diaminopyrimidines?
Act directly on DNA through interference with folic acid metabolism
Act sinergistically - they act on sequential parts of the same pathway
What are the cilnical uses of diaminopyrimidines? What is a disadvantage?
trimethoprim - community acquired UTI but up to 40% of E coli is resistant
How can resistance to sulfonamides be overcome?
Sulphonamide resistance is common
Combination of sulphamethoxazole + trimethroprim (Co-trimoxazole) is useful in certain situations e.g. treating Pneumocystis jiroveci pneumonia)
Broad spectrum- covers lots of coliforms
What is co-trimoxazole? What is it useful for?
Sulphamethoxazole and trimethoprim - pneumocystis jiroveci pneumonia
Name 4 ways in which bacteria can become resistant to an antibiotic.
Can be affected by multiple mechanisms
- Chemical modification or inactivation of the antibiotic E.g. b-lactamase enzyme production
- Modification or replacement of target in the microbe
- Reduced antibiotic accumulation - Impaired uptake/ enhanced efflux
- Bypass antibiotic sensitive step

How do coliforms and S aureus become resistant to beta-lactams?
Beta-lactamase production
What type of resistance does MRSA display? Describe it.
Altered target - mecA gene encodes a new PBP (2a) –> low affinity for all beta-lactam antibiotics.
What is the type of resistance of S. pyogenes to penicillin? Can it be overcome?
Altered target - stepwise mutations in PBP genes
Sometimes can be overcome with:
- increasing dose but not in meningitis (as not all crosses the BBB anyway)
- adding vancomycin in pneumococcus infection
What antibiotic class do ESBLs confer resistance against? What organisms most commonly produce this?
Break down cephalosporins - especially produced by E. coli and Klebsiella
In which infections is beta-lactamase production not the mechanim or resistance against penicillin?
pneumococci and MRSA
Why is tonsillitis treated with penicillins (hint: resistance)?
Penicillin resistance not reported in Group A (S. pyogenes), B, C, or G ß haemolytic Streptococci.
Which beta-lactam/beta-lacatamase inhibitor combination can sometimes be used for ESBLs?
Augmentin/Tazocin - but treatment failures have been reported
What is the danger with ESBLs?
They spread quickly - via plasmids or transposons
What is the % resistance indicating you can no longer use an antibiotic for empiric treatement?
10%
e.g. ESBLs in E coli
What is the mechanim of resistance against macrolides? Describe it.
Altered targets
- Adenine-N6 methyltransferase modifies 23S RNA –> reduces the binding of macrolides –> resistance
- Encoded by erm (erythromycin ribosome methylation) genes
- It is an inducible mechanism
- IV- clindamycin does NOT induce this mechanism so it can look sensitive but eventually it will select out resistant organisms –> treatment failure
What 2 ways can be used to reduce the spread of antibiotic resistance?
- Control antibiotic usage and encourage good prescribing habits
- Improve standards of hospital hygiene and encourage handwashing to reduce dissemination of resistant organisms
Which mechanism mediates Flucloxacillin resistance in S. aureus?
Alteration of the target
By which mechanism is ESBL E. coli resistant to Ceftriaxone?
Enzymatic inactivation of the antibiotic (as it is extended spectrum b-lactamase)