METABOLISM SYLLABUS 1: Intro to Metabolism & to Metabolic Regulation by Insulin & Glucagon Flashcards
metabolism?
sequence of enzyme-catalyzed reactions that brings about the transformation of substrate to product
major purposes of metabolism?
1) obtain & trap chemical energy from substrates
2) build precursors to macromolecules from substrates
3) assemble precursors into macromolecules like DNA, glycogen, fat
4) degrade macromolecules into simpler molecules (like glycogen to glucose)
catabolism vs. anabolism?
catabolism: oxidative breakdown of large macromolecules into smaller, simpler compounds. accompanied by release of free energy, trapping it as ATP - e.g. glucose -> pyruvate
anabolism: enzymatic synthesis of large macromolecules from smaller, simpler precursors. requires energy input - e.g. pyruvate -> glucose
what are amphibolic pathways?
pathways w/ both cataboilc and anabolic components - so can both breakdown and synthesize
e.g. TCA cycle
what are the major differences in catabolism and anabolism? why?
1) ENZYMES
2) ENERGETICS: ATP made in catabolism, used in anabolism
3) COFACTORS: NAD+->NADH in catabolism and NADPH -> NADP+in anabolism
4) CELLULAR LOCALIZATION: fatty acid oxidation in th emito, fatty acid synthesis in the cyto
identical pathways would prevent regulation, lead to futile cycling and energy waste
what regulates metabolism?
1) availability and concetration of substrates & cofactors
2) availability and need for energy/ATP
3) regulatory enzymes
4) enzyme characteristics
5) genetic control of amt of enzyme in cell
6) hormonal regulation
what is end product feedback inhibition?
principle that anabolic reations are often inhibited by products of that very anabolic reaction
constituitive vs. adaptive enzymes?
constituitive: enzymes that’re always present in constant or near-constant amount; are the more important enzymes
adaptive: enzymes that can increase or diecrease under certain metabolic conditions, in reaction to a substrate, toxin, or drug which changes their amount in response to a signal
hormones?
chemical messenger produced in a tissue which will modify a specific metabolic reaction in aonther tissue
often acts on regulatory enzymes or activates or represses gene expression
what methods can determine the rate limiting step in a biochemical pathway?
1) assays on relative activites
2) comparisons of the equilibrium constant to the mass action ratio
which enzyme in a pathway is the rate limiting enzyme?
enzyme with the lowest relative activity and enzymes with big discrepancy between their Keq and mass action ratio
what are the rate limiting enzymes of glycolysis?
hexokinase, phosphofructokinase, and pyruvate kinase
what is the effect of an inhibitor on a rate-limiting vs. non-rate-limiting enzyme?
an inhibitor of a rate-limiting enzyme inhibits the overall pathway
an inhibitor of a non-rate-limiting enzyme inhibits the enzyme but likely not the overall pathway
what enzymes are most likely to be regulated?
relatively low active enzymes and enzymes that fail to maintain equilibrium are likely to be regulated
what is the RBC’s only form of energy?
glucose. they do not have mitochondria!
what organi is the major controller of our metabolism?
liver
what processes during glycolysis cause the release of ATP?
susbtrate level phosphorylation or oxidative phosphorylation
what kind of energy does ATP hydrolysis yield?
ATP -> ADP + Pihas a deltaG of 7-8 Kcal/mol
ATP is a high energy compound, and yields a middle-amount of energy compared to other compounds
what happens when ATP is hydrolyzed to ADP?
what happens when ATP is hydrolyzed to AMP?
ATP -> ADP + Pidissipates 1 high energy bond
ATP -> AMP + PiPidissipates 2 high energy bonds
PiPi, pyrophosphate, is rapidly hydrolyzed to 2 molecules of Piby pyrophosphatase
what is the structure of NAD+ vs NADH
NAD+ is oxidized, NADH is reduced