MCAT Q&A -Summer 2011 Flashcards
what’s the opposite of a vector quantity?
Scalar
energy is a [scalar/vector/neither] quantity.
Scalar
displacement is a [scalar/vector/neither] quantity
vector
time is a a [scalar/vector/neither] quantity
scalar
cos2θ + sin2θ = ???
1
what is mass percent? Define it.
(BR chem. 17)
mass of solute / mass of solution
what does ‘solvate’ (verb) mean?
Solvate (noun) is an aggregate that consists of a solute ion or molecule with one or more solvent molecules;
also : a substance (as a hydrate) containing such ions (m-w.com)
What is a lipid?
Any biological molecule that has low solubility in water (hydrophobic), and high solubility in nonpolar organic solvents.
what does amphipathic mean?
Polar at one end (hydrophilic),
nonpolar at the other end (lipophilic)
What are the six major groups of lipids?
Fatty acids;
glycolipids;
phospholipids;
steroids;
terpenes
triglycerides (EK Bio 2)
Fatty acids; triglycerides; phospholipids; glycolipids; steroids; terpenes (EK Bio 2)
what must be noted about the above list of 6 lipids?
triglycerides; phospholipids; glycolipids
are sometimes simply referred to as ‘fatty acids’ b/c fatty acids are a component of all of them
(EK Bio 2)
the main constituent of veggie oil and animal fat is ____
triglyceride
what are fatty acids?
i.e., describe their chemical components
they’re long chains of carbons truncated at one end by carboxylic acid
(EK BIO 2)
In humans, what is the max # of carbons for a fatty acid chain?
24
Are all fatty acids saturated?
No. fatty acids can be saturated or unsaturated
[saturated/unsaturated] fatty acids contain all single bonds
saturated
triglycerides are also called ____
triacylglycerols
what are the components that make up a triglyceride?
3 fatty acids bonded to a glycerol; according to Audio Osmosis it’s “3 carbon chains dangling from a 3-carbon backbone”
what is glycerol?
propan-1,2,3-triol
3 hydroxyl groups attached to 3 carbons
A 3-carbon backbone of triglycerides
What is the purpose of triglycerides?
To store energy, & provide thermal insulation and padding
special cells, AKA fat cells, whose cytoplasm contains almost nothing but triglycerides, are called _____
adipocytes
What are phospholipids?
A glycerol backbone with 2 fatty acids and a phosphate group attached
in what part of the cell do we phospholipids?
Cell membranes
where are glycolipids found abundantly?
In the membranes of myelinated cells of nervous system
what are steroids?
4-ringed structures
what is the major purpose/function of steroids?
To regulate metabolic activities
what are eicosanoids?
20-carbon-length fatty acids
what is the purpose/function of eicosanoids?
Local hormones
give examples of steroids.
Some hormones,
vitamin D,
cholesterol
what are terpenes?
Class of lipids
example of terpenes includes _______
vitamin A
In bio, what does the word “essential” mean?
Means cannot be produced by the body, so it must be ingested
how many, if any, of the 20 most common amino acids are ‘essential’?
between 8 to 11
What’s the ‘primary structure’ of a polypeptide?
The sequence and number of amino acids that form the polypeptide chain
what’s the ‘secondary structure’ of a polypeptide?
alpha-helix, or beta-pleated sheet
why does the helix, or the pleated sheet, form?
Forms from H-bonding
What does the suffux –PHAGE refer to?
Cells that “eat” (e.g., Macrophages)
The suffix can also refer to viruses.
What atoms/molecules specifically H-bonds in the secondary structures?
H-bonding between the carboxyl oxygen of one amino acid, and the hydrogen on the amino group (–NH2) of the other amino acid
True/False – 2nd-ary structures are created by interactions between the side chains of adjacent amino acids
False.
Created by interaction between atoms of the peptides’ backbone
What’s the tertiary structure?
Overall 3-dimensional structure of a single polypeptide chain
how is the tertiary structure created?
By variety of interactions among R-groups, or
between the R-groups and the peptide backbone
What types of chemical bonds make tertiary structures possible?
Disulfide bonds,
H-bonds,
ionic interactions between acidic and hydrophobic side chains;
van der Waals
What’s the quaternary structure of proteins?
Two or more polypeptide chains binding together
two broad types/categories of proteins are ____ and ____
globular and structural
What’s the difference between globular and structural proteins?
Structural proteins made from long polymers; they add strength to cellular and matrix structures
When you see nitrogen on the MCAT, think [nucleic acids/ some lipids / some carbs / proteins]
all of the above have nitrogen, but for the MCAT think PROTEIN
(EK Bio 6)
glucose is a #-carbon sugar
6
if glucose needs to be stored, it is converted by the body to _____
glycogen, or into fat
what is glycogen. Describe it.
Branched glucose polymer
Does glycogen have alpha or beta linkages?
alpha linkages
glycogen is stored mainly in ______?
stored in mainly the liver and muscles as glycogen. (wiki article on glucose)
The polysaccharides formed from glucose by plants are _______.
starch and cellulose
Given:
glycogen, cellulose, and starch.
Which of these have alpha linkages, which beta?
Glycogen and starch have alpha
the basic monomer of a DNA strand is ____
a nucleotide
Name the 3 components of nucleotides.
a 5-carbon sugar,
nitrogenous base,
phosphate group
what specific bond joins together individual nucleotides?
The phosphodiester bond
what bonding joins together the two strands of a DNA molecule?
The ‘rungs’ of the DNA spiral ‘ladder’ are held together by hydrogen bonding
(EK bio 8)
name the nucleotides that make up DNA
adenine,
thymine,
cytosine, and
guanine
how is RNA different from the above list of nucleotides?
RNA lacks thymine; instead has uracil
List other very important nucleotides, besides A T C G and U.
ATP;
GMP
cyclic AMP;
NADH; &
FADH2
What are ‘minerals’ when talking about them in biology?
The dissolved inorganic ions inside and outside the cell
[true/false] :
Enzymes alter the equilibrium of a rxn
false.
Enzymes are catalysts. Like any catalyst, enzymes don’t alter eq of a rxn
The reactant or reactants upon which the enzyme works, is called a _____
substrate
the part of the enzyme to which the substrate binds, is called _____
the active site
(EK bio 11)
Besides the lock-and-key model, there’s also the _______ theory/model
induced fit
explain ‘saturation kinetics’
as the concentration of substrate increases, the rate of rxn also increases, but
it’s diminishing returns until a Vmax is reached (horizontal asymptote)
What are coenzymes?
Organic molecule that serves as a type of cofactor
what are cofactors?
A non-protein component that many enzymes require to reach optimal activity
are vitamins related to coenzymes? If so, how?
Many vitamins or vitamin-derivatives are coenzymes
list the mechanisms by which enzyme activity can be blocked.
Competitive inhibition;
noncompetitive inhibition; and
irreversible inhibition
Competitive inhibition;
noncompetitive inhibition; and
irreversible inhibition
Which of the above 3 mechanisms is highly toxic?
irreversible
How do irreversible inhibitors work?
They bind covalently to enzymes (a few bond noncovalently)
describe non-competitive inhibition
the inhibitor bonds to an enzyme at a spot OTHER than the active site, and changes the conformation of the enzyme
The inactive form of an enzyme is called a/n?
zymogen, or
proenzyme
The shutdown mechanism for enzyme activity is called ____
negative feedback
Metabolism consists of ____bolism and ___bolism
catabolism,
anabolism
which –bolism means “building up”?
anabolism is molecular synthesis
The first stage of aerobic respiration is ___
glycolysis
The first stage of anaerobic respiration is____
glycolysis
briefly summarize/explain/define glycolysis
the series of rxns that break glucose molecule into two 3-carbon molecules of pyruvate
is pyruvate related to pyruvic acid?
yes
how is pyruvate related to pyruvic acid?
Pyruvate is the conjugate base of pyruvic acid
glycolysis produces a net of ____ ATP molecules
2
true/false:
glycolysis will not occur w/o oxygen
false.
It can occur with and w/o oxygen
anaerobic respiration is also called?
fermentation
in fermentation, pyruvate is turned into _____ in human muscle cells
lactic acid
yeast turns pyruvate into ____ during fermentation
ethanol
after glycolysis, what happens next with Aerobic respiration?
Pyruvate and NADH move into mitochondrion, where the pyruvate is converted into acetyl CoA
What’s the next step after pyruvate is converted to Acetyl CoA?
Krebs cycle
Krebs cycle is aka?
Citric acid cycle
and
Tricarboxylic acid cycle (TCA)
1 glucose molecule produces ___ turns of the Krebs cycle
2
Each turn of the Krebs cycle produces ___ ATP, ____ NADH, & ___ FADH2.
1 ATP,
3 NADH, &
1 FADH2
AERObic respiration, including glycolysis, produces a net ____ ATP molecules
36
- What is the electron transport chain?
- Where is it located?
Series of proteins called cytochromes in the inner membrane of the mitochondrion
In MCAT’s Newtonian physics, the two types of friction are:
static friction and kinetic friction
which of the two types of Newtonian friction is usually larger?
Static
What’s the temp of the human body, in Celsius?
37
What’s the molar mass of water?
18 grams per mole
What are the 4 broad groups for the 20 amino acids?
Nonpolar; polar; acidic, and basic
How do you remember the** basic** amino acids? [mnemonic device]
The basic acids with basic R groups are H-A-L
How do you remember the acidic amino acids?
They’re aspartic acid; and glutamic acid.
Just memorize them.
what chemical is the intermediate between pyruvate and the Krebs cycle?
Acetyl CoA
What does the electron transport chain really do? What is its purpose/function?
Pass down electrons from 1 protein to next. They pump protons into the inter-membrane space so that the inter-membrane space will have low pH.
What’s ATP synthase?
Integral protein of the inner membrane of Mitochondria
What does ATP synthase do?
allows protons to flow thru the membrane back into mitochondrial matrix;
The overall reaction sequence is:
ATP synthase + ADP + Pi → ATP Synthase + ATP
How does the body break down fat for energy?
[answer has several steps]
Triglycerides broken into glycerol and fatty acids;
glycerol enters glycolysis.
Fatty acids taken to mitochondrial matrix and turned into Acetyl CoA
How does the body break down proteins for energy? Specifically, where in the energy cycle do the proteins enter?
amino acids enter the production processes at different points, depending on the type of amino acid involved
where in the body is pyruvate converted to Acetyl CoA?
Inside the mitochondrial matrix
In aerobic organisms, when/why would fermentation occur?
If O2 were not present
Describe the fermentation process.
NADH oxidized back to NAD+;
(this process produces CO2 and ethanol (in yeast), or lactic acid in other organisms.)
What are the net products of glycolysis?
the net products of glycolysis:
2 atp; 2 nadh; 2 pyruvates
What’s substrate level phosphorylation?
Refers to the process of ATP production in the Krebs cycle
What’s oxidative phosphorylation?
The production of ATP using ATP synthase
What is helicase?
A motor protein
What does helicase do?
They move directionally along a nucleic acid phosphodiester backbone, separating two annealed nucleic acid strands by breaking the H-bonds between annealed nucleotide bases
What powers helicase?
the energy from ATP hydrolysis
True/False:
Helicase is just one protein that’s the same, no matter which organism it’s found in.
False.
There are many helicases (14 confirmed in E. coli, 24 in human cells) resulting from the great variety of processes in which strand separation must be catalyzed
How does helicase “move”?
move incrementally along one nucleic acid strand of the duplex with a directionality and processivity specific to each particular enzyme.
What’s the replication fork?
Structure that forms during DNA replication when the double helix unwinds and is partially unzipped
What is the function of DNA polymerase?
Adds nucleotides to a new strand of DNA
Can DNA polymerases start a new strand of DNA?
No.
They can only add new nucleotides to an existing strand of DNA.
DNA Polymerases can only add new nucleotides to an existing strand of DNA.
So then, what can start a new DNA strand?
a primer
What is a primer?
What is it made of, and
what is its function?
A primer is a strand of nucleic acid (most of the time it’s RNA) that serves as a starting point for DNA synthesis.
They are required for DNA replication because the enzymes that catalyze this process, DNA polymerases, can only add new nucleotides to an existing strand of DNA.
Where on the DNA strand does the polymerase start its replication?
The polymerase starts replication at the 3’-end of the primer, and copies the opposite strand.
what’s meant by the “fluid mosaic model”?
means that the phospholipids that make up the bilayer of a membrane can float around, but can’t separate from the bilayer
in eukaryotic molecules, ________ regulates membrane fluidity
cholesterol
What’s a lagging strand?
The lagging strand is that strand of the DNA double helix that is orientated in a 5’ to 3’ manner
All DNA synthesis occurs [5’-3’ / 3’-5’].
5’-3’
To produce a complementary strand, the original DNA strand must be read [5’-3’ / 3’-5’] to produce a new 5’-3’ strand.
The original DNA strand must be read 3’-5’ to produce a 5’-3’ nascent strand.
T/F:
Both strands, leading and lagging, are replicated in long, continuous strands.
false
“Both strands, leading and lagging, are replicated in long, continuous strands.”
Correct the above statement.
One strand is made continuously; the other strand is made in discontinuous fragments
What is the leading strand?
the strand of DNA that is being replicated continuously. It is the strand that is being continuously polymerized towards the replication fork.
What direction does the lagging strand grow in?
opposite to the unzipping of the replication fork
The lagging strand is made in fragments.
What are these fragments called?
Okazaki fragments
Why is the lagging strand made in fragments?
Because the strand is growing away from the replication fork, it needs to be replicated in fragments because the Primase (that adds the RNA primer) has to wait until the fork opens further to be able to put the primer.
What are bacteriophages?
virus that infects bacteria
What is capsid?
protein coat containing nucleic acids of virus
Which viruses often have an eicosehedral capsid?
Bacteriophages and
most animal viruses
most viruses that infect eukaryotes are engulfed by an _____ process
endocytotic
What are the 2 possible life cycles of the virus?
lytic cycle and lysogenic cycle.
How are viruses different from living things?
VIRUS not living cuz:
- -do not contain both DNA and RNA
- -have either DNA OR RNA
- -don’t make their own ATP, instead use the host cell’s ATP
Why is there a species barrier against many viral infections?
virus needs specific glycoprotein on host’s cell membrane, in order to enter Host cell.
Different species have different cell membranes with different glycoproteins. This is why there’s the species barrier against viral infections.
What’s a Virulent virus?
virus that follows the lytic life cycle
What’s the other category of virus, other than virulent viruses?
Temperate viruses
What is a temperate virus?
virus in a lysogenic life cycle
What does a virus do after attaching to a cell membrane?
After attaching to cell membrane, virus either
injects nukes directly into cell, or
for animal viruses, is taken into cell through endocytosis
Describe briefly the lytic cycle.
Summarize the lytic life cycle.
Lytic cycle – the viral nucleic acids and enzymes immediately take over the reproductive functions of the cell, start making virions. Cell swells with virions and bursts, releasing virions into external environment.
Summarize the lysogenic cycle.
Lysogenic cycle – the virus’ nukes are incorporated into host cell genome. Host cell makes copies of the viral nukes as it naturally reproduces.
What’s a provirus?
Provirus – name of viral DNA that is embedded in host DNA
Can a virus have single stranded DNA?
Can a virus have double-stranded RNA?
Virus classified by type of nuke it produces.
It can have either single, or double-stranded DNA. Or
it can have either single- or double-stranded RNA.
What is meant by ‘Plus-strand RNA’ or ‘positive-sense’ RNA’?
some viruses have plus-strand RNA, meaning the RNA can be directly translated into protein
What is meant by MINUS-strand (negative sense)** **RNA?
has to be transcribed into positive-sense RNA (by an RNA polymerase) before it can be translated.
What is Reverse transcriptase?
enzyme carried by Retroviruses to create DNA from its RNA, by reverse-transcribing RNA into DNA for incorporation into host-cell’s genome
What is the most famous retrovirus?
HIV
what happens to the DNA created by a retrovirus?
DNA is incorporated into genome of host cell
measles, rabies, flu, are all [plus/minus]-strand RNA viruses
MINUS
what is Positive-sense (plus-strand RNA) analogous to?
viral mRNA
What are Viroids?
infectious pieces of naked RNA in ring form; infect only plants
What are Prions?
naked proteins that cause infections in animals; CAN REPRODUCE themselves w/o DNA or RNA
What is Monera?
a now-obsolete taxonomic group in biological classification originally understood as one of five biological Kingdoms.
The kingdom Monera included most organisms with a prokaryotic cell organization (that is, no nucleus). For this reason, the kingdom was sometimes called Prokaryota or Prokaryotae.
Under the three-domain system of taxonomy established in 1990, the organisms formerly within Monera have been divided into two Domains, Archaea and Bacteria (with Eukaryote as the third domain).
What makes Prokaryotes distinct from eukaryotes?
no membrane-bound nucleus
What are the 2 domains that now make up the old-fashioned grouping called Prokaryotes?
bacteria and
archaea
What is the difference between archaea and prokaryotes?
archaea cell walls not made of peptidoglycan
the 2 domains that now make up the old-fashioned grouping called Prokaryotes, are bacteria and archaea.
What is the difference between archaea and bacteria?
archaea cell walls not made of peptidoglycan
What are Virions?
metabolically inactive form of the virus
What are the names of the major shapes of bacteria?
The major shapes of bacteria are coccus Cocci (round) or bacillus bacilli (rod shape)
Besides cocci and bacilli, what are other bacterial shapes?
Other bacteria shapes are
- spirilla (twists like a spiral),
- vibrio (a curved rod shape or “comma” shape), and
- spirochetes
what are the main components of a phospholipid?
A phosphate group,
2 fatty acid chains, and a
glycerol backbone
T/F: Phospholipids are amphipathic
true
which part of the phospholipids is polar, and which nonpolar?
Phosphate group = polar;
fatty acid chain = nonpolar
proteins that punch through both bilayers are called _______
Integral proteins, or intrinsic proteins
proteins that pierce only one layer of the phospholipids bilayer are called _____
Peripheral or extrinsic proteins
the carbohydrate portion of a glycoprotein always protrudes towards the [inside/outside] of the cell.
outside
each layer of the bilayer is called a _____
leaflet
what’s passive diffusion?
something moves across the membrane in the direction of its electrochemical gradient
w/o use of a specific protein channel,
w/o expenditure of additional energy
The more charge a molecule has, the [harder/easier] it is to passively diffuse across membrane
harder
Can facilitative diffusion be in any particular direction?
Facilitative diffusion – must be in direction of electrochemical gradient of the molecule being transported
______ transport = against electrochemical gradient
active transport goes against the electrochemical gradient
Is the Sodium-potassium pump an example of active or facilitative transport?
active
What does the sodium-potassium pump do?
3 Na out of cell,
2 K into cell
(1 ATP expended)
What is Peptidoglycan / murein?
Peptidoglycan, also known as murein, is a polymer consisting of sugars and amino acids that forms a mesh-like layer outside the plasma membrane of bacteria (but not Archaea), forming the cell wall.
When saying ‘gram positive’, what part of the bacteria gets stained?
Staining the peptidoglycan cell walls
what color is a Gram positive stain?
dark purple
What color is a gram negative stain?
pink
What are Fimbria?
[microbiology]
short tentacles possessed by many gram-negative bacteria.
Not involved in motility.
Flagella is made from a protein called _____
flagellin
in bacteria, flagella are powered by ______
proton pump
What’s Chemotaxis?
Chemotaxis is the phenomenon in which somatic cells, bacteria, and other single-cell or multicellular organisms direct their movements according to certain chemicals in their environment.
what’s a plasmid?
Small circles of DNA that exist and replicate independently of the bacterial chromosome
what is the method employed by Bacteria to reproduce?
Bacteria reproduce by Binary fission
what are the methods by which bacteria recombine their genes?
Recombine their genes through conjugation, transformation, transduction
conjugation, transformation, transduction
in which of the above 3 methods is f-plasmid involved?
conjugation
What is bacterial conjugation?
Bacterial conjugation is the transfer of genetic material between bacterial cells by direct cell-to-cell contact or by a bridge-like connection between two cells.
What is an F plasmid?
A type of fertility factor or F-factor
what’s a fertility factor?
Fertility factor (also known as the F factor, or sex factor) is a bacterial DNA sequence that allows a bacterium to produce a sex pilus necessary for conjugation.
A common form of F-factor is an F-plasmid
In bacteriology, What’s transformation?
pick up naked DNA from outside environment
What’s transduction?
transfer of genetic information thru vector, such as virus
what’s an Endospore?
a dormant, tough, and temporarily non-reproductive structure produced by certain bacteria;
Endospores enable bacteria to lay dormant for extended periods, even centuries.
What are autotrophs?
can fix CO2 and use it as carbon source
What are the opposite of autotrophs?
Heterotrophs
What are chemotrophs?
use oxidation of organic or inorganic matter as energy source
What are Lithotrophs?
Some types of bacteria that use inorganic matter source for electrons
What are organotrophs?
type of chemotroph that gets electrons from organic matter
What does it mean to say that all fungi are exodigestors?
All fungi are exodigestors – spit on food, lie in it, and absorb nutrients
what does Saprophytic mean?
eats dead stuff
Fungus have Cell walls made from a polysaccharide called _____
chitin
Do fungus do asexual or sexual reproduction?
Can do asexual and sexual reproduction
Each turn of the Krebs cycle produces these molecules:
ATP;
FADH2
NADH
A glycolysis reaction produces these molecules:
ATP
NADH
Pyruvate
Minus-strand (i.e., negative-sense) RNA is transcribed into plus-strand RNA by this protein:
an RNA polymerase
most fungi are [unicellular/multicellular]
multicellular
What is hyphae?
A hypha (plural hyphae) is a long, branching filamentous structure of a fungus.
In most fungi, ___ are the main mode of vegetative growth
hyphae
Hyphae are collectively called :
mycelium
nuclear pores allow ___ to pass freely to and from cytosol
RNA
what happens inside a nucleolus
ribosomal subunits assembled;
rRNA transcribed
What are the 3 types of endocytosis?
phagocytosis,
receptor-mediated endocytosis,
pinocytosis
The bag that forms as a result of phagocytosis is called _________
phagosome
what are mitotic spindle fibers made from?
Tubulin
(EK bio 77)
in vertebrates, phagocytosis is seen more with ____.
WBC
What’s the word associated in pinocytosis?
invagination
Which cells can do pinocytosis?
most cells do pinocytosis
What is receptor mediated endocytosis?
R-M endocytosis refers specifically to uptake of macromolecules,
e.g. hormones and nutrients
Cholesterol is taken in to cell, by what type of endocytosis?
R-M endocytosis
rough ER is also called _______
granular ER
A series of flattened, membrane bound sacs in the cell are called ____
Golgi complex
What role does the Rough ER play?
The ribosomes on the rough ER translates proteins;
mRNA of proteins binds to free ribosomes