MCAT Bio 2014 Flashcards
Is ENDOpeptidase one enzyme, or a group of enzymes?
group
what do ENDOpeptidases do?
break the peptide bonds of NONterminal amino acids
peptidases are AKA?
protease,
proteinase
proteases are AKA?
peptidase
What is protease?
any enzyme that does proteolysis
What is peptidase?
any enzyme that does proteolysis
what’s the fancy word for the enzymatic destruction of proteins?
proteolysis
ENTEROpeptidase is AKA:
enterokinase
What region/part of the body MAKES Enteropeptidases?
cells of the Duodenal mucosa
what gland in the body secretes ENTERopeptidase?
crypts of Lieberkuhn
What does ENTERopeptidase do?
converts trypsinogen (a zymogen) into its active form trypsin
How do proteases and peptidases differ?
they’re the same shit
the Ampulla of Vater is formed by the merging of the ___ and the ___.
pancreatic duct,
common bile
The common bile duct is formed by the merging of the ____ with the ____.
Common hepatic duct,
cystic duct
The duct that goes directly into (or, “comes straight out of”) the Gallbladder is the:
cystic duct
pancreatic duct merges with the common bile duct to form the:
Ampulla of Vater
Common hepatic duct and cystic duct merge to form the:
common bile duct
The ___ duct and cystic duct merge to form the common bile duct.
common hepatic
the Alpha cells of the pancreas produce:
glucagon
the Delta cells of the pancreas produce:
somatostatin
the Beta cells of the pancreas produce:
insulin,
amylin
the Gamma cells of the pancreas produce
pancreatic polypeptide
the Epsilon cells of the pancreas produce:
ghrelin
the ____ cells of the pancreas produce glucagon:
Alpha
the ____ cells of the pancreas produce amylin and insulin:
beta
the ____ cells of the pancreas produce somatostatin
delta
the ____ cells of the pancreas produce **pancreatic polypeptide **
gamma
the ____ cells of the pancreas produce ghrelin
Epsilon
What is a monogenic disorder?
an inherited disorder that is caused by a defect in only ONE gene
What is the # assigned to the sex chromosome?
No. 23
What is an autosome?
any non-sex chromosome.
So chromosomes # 1 - 22 are all Autosomes.
The opposite of an autosome is:
a sex chromoxome
(e.g., X or Y)
A chromosome that’s not a sex chromosome is called a/n:
autosome
T/F:
All sex-chromosome linked diseases are caused by mutations on the X chromosome.
FALS.
Although very rare, there are some “Y-linked” disorders.
The term “dominant” or “recessive” is used for genetic disorders that are [autosomal / sex-linked / either]
either
List 3 well-known Eicosanoids:
leukotrienes,
prostaglandins,
thromboxanes
(1) What’s a missense mutation?
(2) What is the result of a missense mutation?
alteration in a single nucleotide of an amino acid coding sequence
is a point mutation, in which a single nucleotide change results in a different codon that codes for a different amino acid.
Result is a possible change in that specific amino acid, thus creating a change in the primary structure of the protein.
What is a nonsense mutation?
what is the result of a nonsense mutation?
change in the nucleotide sequence,
will create a STOP codon that prematurely cuts off the polypeptide’s synthesis
What’s a frameshift mutation?
the addition/insertion, or deletion, of one or more base-pairs in multiples other than 3
what’s a point mutation?
a change in a *single *nucleotide in a double strand of DNA
What is a transition mutation?
changes a purine nucleotide to another purine (A ↔ G)
OR
a pyrimidine nucleotide to another pyrimidine (C ↔ T).
what’s a transversion mutation?
the substitution of a purine for a pyrimidine
OR
vice versa
What’s a non-frameshift mutation?
the addition or deletion of exactly 3 nucleotides to an amino acid coding sequence,
causing the addition or deletion of an amino acid
In virology, what is the eclipse period?
the time between the injection of viral nukes into the Host, and the appearance of the first fully formed virion
What is a chylomicron?
What is a chylomicron made of?
Large particles of lipoprotein, that consist of:
triglycerides (~ 85-90%),
phospholipids,
cholesterol,
proteins
What is the function of a chylomicron?
transport dietary lipids from the intestines to:
- liver,
- adipose,
- cardiac, and
- skeletal muscle tissue
List the five major groups of lipoproteins that enable fats and cholesterol to move within the watery solution of the blood.
chylomicrons,
VLDL,
IDL,
LDL,
HDL
Very-low-density lipoproteins are made by the ____
liver
(1) What are Apolipoproteins?
(2) Their fcn?
proteins that bind lipids to form lipoproteins.
–They transport the lipids through the lymphatic and circulatory systems.
–Apolipoproteins also serve as
enzyme cofactors, and
ligands for cell-surface receptors
Chylomicrons are identified by a surface marker called:
apoprotein B-48
Plasma lipoprotein lipase hydrolyzes:
chylomicrons
Which of the major lipoproteins is synthesized by the liver?
VLDL
What’s the fcn of VLDL?
to transport triglycerides and cholesterol from liver to adipose tissue
IDL, LDL, and VLDL
Which of the above lipoproteins is a precursor to the synthesis of which? Rearrange and order the above.
VLDL → IDL → LDL
What factors/variables can directly affect the activity of enzymes?
pH,
temperature,
and [substrate] (i.e., substrate concentration)
Which one of the major Lipoproteins has the lowest lipid density?
chylomicrons
Which of the major Lipoproteins has the highest lipid content?
chylomicrons
What effect do enzymes have on activation energy?
↓↓ energy of activation
What effect do enzymes have on the rate of a reaction?
enzymes ↑↑ the reaction’s Rate
What effect do enzymes have on the rate of the reverse reaction?
enzymes ↑↑ the rate of the reverse reaction
T/F:
Enzymes ↑↑ the rate of both the forward and reverse reactions.
true
What effect do Enzymes have on the Keq of a rxn?
none
What effect do enzymes have on the Δ S of a reaction?
none
What effect do enzymes have on the Δ G of a reaction?
none
What effect do enzymes have on the Δ H of a reaction?
none
Do RBCs possess mitochondria?
No
T/F:
RBCs don’t have any organelles.
t
T/F:
RBCs have Na+/K+ pumps.
t.
All cells in the human have Na/K pumps.
The citric acid cycle not only converts sugars, it also accepts _____.
fatty acids and
proteins
Acetyl CoA is made from the breakdown of these fuels:
glucose, or
fatty acids
What product of glucose breakdown can be converted into amino acids?
pyruvate
In order to be optically active, a molecule or compound must be ____.
assymetric
[T/F]:
Symmetric molecules can be optically active.
F. Only asymmetrical molcules can be optically active.
Can fatty acids be converted into glucose via Gluconeogenesis?
yep.
Only ODD-chained fatty acids (i.e., odd number of Carbons) can.
In order for a compound to enter into Glycolysis, that compound must contain at least [#] carbons.
3
What is an isozyme?
Isozymes are enzymes that differ in amino acid sequence but catalyze the same chemical reaction.
For a non-carbohydrate precursor to enter Gluconeogenesis, that precursor must first be converted into:
pyruvate;
oxaloacetate;
dihydroxyacetone phosphate (DHAP)
Oxaloacetate requires a ____ shuttle to cross the inner mitochondrial membrane.
malate
Oxaloacetate requires a malate shuttle to cross the ____ membrane.
inner mitochondrial
Gluconeogenesis can occur in the ____.
–Liver
–Cortex of kidney
What is the role of NAD+ in glycolysis?
to accept high-energy electrons during oxidation
What is the role of FAD in glycolysis?
to accept high-energy electrons during glycolysis
How many carbons does Pyruvate have?
3
Which reaction product in the Glycolysis chain, can isomerize into another compound?
Dihydroxyacetone phosphate ↔ glyceraldehyde 3-phosphate
glyceraldehyde 3-phosphate is AKA
PGAL
PGAL is also called:
glyceraldehyde 3-phosphate
Which reactions within the Glycolysis chain, needs ATP input for energy?
(1) the conversion of glucose to glucose 6-phosphate
(2) conversion of fructose 6-phosphate to fructose 1,6-diphosphate
How much ATP is needed for the conversion of glucose to glucose 6-phosphate?
1
How much ATP is needed for the conversion of fructose 6-phosphate to fructose 1,6-diphosphate.
1
What is pyrophosphate?
simply, 2 phosphate ions (PO4 3-) bonded together
Write out the net reaction for glycolysis:
**Glucose **+ 2 **ADP **+ 2 Pi<em> </em>+ NAD+ →
2 **pyruvate **+ 2 ATP + 2 NADH + 2 H+ + 2 H2O
In what reaction(s) of the Glycolysis chain, is new ATP synthesized?
(1) 1,3-bisphosphoglycerate → 3-phosphoglycerate
(2) phosphoenolpyruvate → pyruvate
RedOx reactions happen in pairs.
If pyruvate is reduced (during fermentation) into lactic acid or ethanol, then what is oxidized?
NADH is oxidized back into NAD+
What is the Cori cycle?
the reaction pathway in which lactate (produced by anaerobic glycolysis) in the muscles moves to the liver and is converted to glucose, which then returns to the muscles and is metabolized back to lactate.
From one glucose, we ultimately get [#] NADH.
(assume it’s Aerobic respiration)
2 from glycolysis
+
2 from decarboxylation of Pyruvate into Acetyl CoA
+
6 from TCA cycle
____________________
Total = 10 per Glucose
To start the TCA cycle, you react Acetyl CoA with Oxaloacetate to create ______.
citrate
To start the TCA cycle, you react Acetyl CoA with _____ to create Citrate.
Oxaloacetate
Which high-energy intermediates “carry” the electrons from the TCA cycle to the electron transport chain?
NADH and FADH2
Which reactions within the TCA cycle, generate NADH?
(1) isocitrate → alpha-Ketoglutarate
(2) alpha-Ketoglutarate → succinyl-CoA
(3) malate → oxaloacetate
Which reactions within the TCA cycle, generate FADH2?
succinate → fumarate
The final electron acceptor in the electron transport chain is:
Oxygen
The electron transport chain can be organized into 4 complexes. These are:
Complex 1: NADH dehydrogenase
Complex 2: succinate-Q oxidoreductase
Complex 3: b-c1 complex
Complex 4: cytochrome oxidase complex
and
Coenzyme Q10 (ubiquinone)
The electron transport chain begins when NADH gives its electrons directly to _____, which is a part of Complex 1.
FMN (flavin mononucleotide)
From Complex 1, the next step in the Electron Transport Chain are when the electrons are passed to _____.
coenzyme Q
In the ET Chain, coenzyme Q passes electrons to _____.
Complex 3
The last step in the ET Chain occurs when electrons from _______, which is a component of Complex 4, is given to an Oxygen.
cytochrome a3
When arriving at the ET Chain, the FADH2 molecules give their electrons to _____, which in turn will give the electrons to _____.
Complex 2
coenzyme Q
Why is cyanide deadly?
it blocks the final transfer of electrons to Oxygen
Why is dinitrophenol (DNP) deadly?
it destroys mitochondrion’s ability to generate a proton gradient
Why do we inhale Oxygen? Why is this gas critical for us?
Oxygen’s role is to be the final electron acceptor in the ET chain.
T/F:
Aldosterone is made in the adenohypophysis.
F.
Aldosterone is from the adrenal cortex.
Where in the cell, does fermentation take place?
cytoplasm
Where in the cell does glycolysis occur?
cytoplasm
Where in the cell does the conversion of pyruvate to acetyl CoA, occur?
mitochondrial matrix
Where in the cell does the TCA cycle, occur?
mitochondrial matrix
Where in the cell is the ET chain, located?
inner mitochondrial membrane
What is the NET yield of ATP from substrate-level phosphorylation?
a net of 4 ATP
(2 from Glycolysis; and 1 from each turn of the TCA cycle = 4)
How many FADH2 are generated by the TCA cycle?
Each turn of the Krebs cycle, gives you 1 FADH2.
In an anaerobic environment, eukaryotic cells can generate __[#]__ ATP.
2
A prokaryote generates __[#]__ ATP from aerobic respiration.
38
A eukaryote generates __[#]__ ATP from aerobic respiration.
36
Fatty acids can be used as cellular fuel, by taking them into the mitocondrial matrix.
Then, inside the matrix, the fatty acids can be converted into ____.
acetyl CoA
Inside the mitochondrial matrix, the reaction to turn fatty acids into acetyl CoA is called:
beta-oxidation
A single beta-oxidation reaction, that generates 1 acetyl-CoA from a fatty acid, generates high-energy-intermediates.
(1) **Which **high-energy-intermediates are made?
(2) How many hi-energy-intermediates are made?
1 NADH,
and
1 FADH2
The removal of the amine moiety from an amino acid is accomplished by this enzyme:
transaminase
The removal of an amine moiety from an amino acid, by transaminases, results in molecules called _____.
alpha-keto acids
To turn a triglyceride into cellular fuel, the glycerol molecule is converted into _____, which will then enter Glycolysis.
PGAL
How can you tell that a molecule is aromatic?
What determines if a molecule is aromatic?
Aromatic compounds comply with All of the following:
- (1)* are Planar
- (2)* are conjugated - i.e., have a minimum of 2 double bonds, in a double-single-double alternating config
- (3)* HUCKEL’s RULE: have 4n + 2 # of pi electrons (lone-pair electrons count)
In a somatic cell, how many chromosomes are present after the S phase?
46
T/F:
After the S phase, there are 96 chromosomes in a human somatic cell.
F. Somatic cells always have 46 (i.e., “2n”) chromosomes. No matter what.
Gyrase is a type of _____ase.
topoisomerase
What does Gyrase do?
How does it do that?
It relieves the severe supercoiling that Helicase induces when Helicase unwinds DNA, by breaking the bonds between nucleotides to relax the DNA.
Deoxyribose and ribose are different at Carbon # ____.
2
(1) List the prokaryotic ribosomal subunits, in Svedberg units.
(2) What is the combined sedimentation coefficient for prokaryotes, in Svedberg units.
30S
50S
combined = 70S
(1) List the eukaryotic ribosomal subunits, in Svedberg units.
(2) What is the combined sedimentation coefficient for eukaryotes, in Svedberg units.
40 S
60S
combined = 80S
What is SSBP?
What does it do?
Single strand binding protein
Fcn: to keep the replication fork open for the Primase to attach and synthesize an RNA primer.
Will an Enantiomer (mirror-image, but Non-superimposable) rotate light in the opposite direction of the original molecule?
Yep.
(d)-molecule is the same thing as ______.
(+)-molecule
(+)-molecule is the same thing as ______.
(d)-molecule
(-)-molecule is the same thing as ______.
(l)-molecule
(l)-molecule is the same thing as ______.
(-)-molecule
T/F:
(D)-molecule is the same thing as (d)-molecule.
F.
Any process that separates enantiomers is called: ___
resolution
An anticodon is found on a [mRNA / tRNA / DNA].
tRNA
A codon is found on a [mRNA / tRNA / DNA].
mRNA
The sk-loop of tRNA contains the _____.
anticodon sequence
The Shine-Delgarno sequence is rich in [purines / pyrimidines].
purines
T/F:
In order for an organic molecule to be optically active, it must possess chiral centers.
tru
Can Enantiomers be separated by distillation?
No
Can Enantiomers be distributed by recrystallization?
no
The Shine-Delgarno sequence is located [#] base-pairs upstream of the 5’ end of the start codon on an mRNA.
10
The Shine-Delgarno sequence is found on [DNA / mRNA / tRNA].
mRNA
What reaction pathway in the body synthesizes GTP?
TCA (Krebs) cycle
Which amino acids are known as “helix breakers”?
proline
Which amino acids are also considered as imino acids?
proline
How many amino acids are Achiral?
1
(glycine)
Where in the cell does post-transcriptional modification occur?
Rough ER, and
Golgi
In the body, oxidation of Lipids takes place in the _____.
mitochondria
Protein digestion starts in the ___.
stomach
Protein digestion in the stomach is made possible by an enzyme called ___.
Pepsin
Digestion of proteins begins in the stomach, and is completed in the _____.
small intestine
Phenylalanine is converted into another amino acid called ___.
tyrosine
Tyrosine is a precursor of ____.
dopamine and
norepinephrine
What is a Barr body?
a permanently inactivated X-chromosome
T/F:
Males have Barr bodies.
Fals. Only Females!
T/F:
Females have Barr bodies.
Tru
Females have two X chromosomes. Are both expressed?
No.
Normal females have XX, and one of these X chromosomes is inactivated and turned into a Barr body.
If a gene is “imprinted”, that means that the gene is ____.
methylated.
A person w/ 2 Barr bodies has how many X chromosomes?
You always have 1+n X chromosomes and n Barr bodies.
Give 4 High Yield facts about autosomal dominant inheritance.
- Only 1 copy of the mutant gene is needed to have the disease.
- Traits DO NOT SKIP generations
- There’s an equal number of Males and Females who get the disease.
- Father’s can give the disease to their sons.
Can genetic mutations lead to abnormal carbohydrate function?
NO.
Mutations alter proteins, not carbs.
For sex-linked disorders, which inheritance pattern/type will show “skipped generations”?
X-linked RECESSIVE
T/F:
A man with an X-linked recessive disease can pass it on to his sons.
Fals.
Fathers give their sons the Y chromosome. So men who have an X-linked disease, got it from their MOMs.
Males get their Y chromosome from [mom / dad / either].
ONLY from Dad !!!
T/F:
DNA Polymerase proofreads the new DNA strand during replication/synthesis.
Tru.
DNA Polymerase proofreads as it synthesizes.
The protein, that relaxes the tension caused by the opening of the replication fork, is called ___.
gyrase
If a heterozygous man and heterozygous woman both carry an autosomal recessive gene, there is a ____ percent chance that they will have a child with the active disease.
25 %
(draw a Punnett square to see why)
If a heterozygous man and heterozygous woman both carry an autosomal recessive gene, there is a ____ percent chance that they will have a healthy child with no abnormal genes.
25 %
(draw a Punnett square to see why)
B cells are made in the ____.
Bone marrow.
T-cells are made in the ____.
bone marrow
T-cells go to the ____ to mature.
Thymus
Okazaki fragments are bonded together by ____ase.
DNA ligase
Which has a Lower affinity for oxygen:
myoglobin or hemoglobin?
Hemoglobin
Which has a Higher affinity for oxygen:
myoglobin or cytochrome oxidase?
cytochrome oxidase
Most viruses acquire their envelopes from the ____.
Host’s plasma membrane
HSV-1 acquires its envelope from ______.
the Host’s nuclear membrane.
All invading particles (viruses, bacteria, fungi, etc.) have ____ , AKA _____ that allow them to be detected by the Host’s immune system.
surface markers, AKA antigens
Define “virulence”.
ability to cause infection
T/F:
HSV-1 can be spread thru skin contact.
tru
How does HSV-1 get from skin to your nervous system?
HSV-1 travels from skin to a Ganglion, via retrograde movement along the axons of afferent sensory nerve fibers.
HSV-1 travels, from skin, along axons of [afferent / efferent] [motor / sensory] nerve fibers.
afferent;
sensory
During its latency period, HSV-1 “hides” in your body in ____.
ganglia
(usually the Trigeminal nerve’s ganglion)
In Virology, what is tegument?
a cluster of proteins that is located between the virus’ capsid and envelope.
Teguments are associated with this family of viruses:
Herpesviruses
Herpesviridae are a family of [single / double]-stranded [DNA / RNA] viruses.
double
DNA
Tyrosine is created from this amino acid:
phenylalanine
phenylalanine is a precursor to this amino acid:
tyrosine
What is the Michaelis-Menten equation for competitive inhibition?
Vo =
(Vmax* [S]) ** /** ([S] + Km )
A reaction has a certain Km and Vmax. If you add a competitive inhibitor to the reaction, the Km will [increase / decrease / not change].
increase
A reaction has a certain Km and Vmax. If you add a noncompetitive inhibitor to the reaction, the Vmax will [increase / decrease / not change].
decrease
EXPLANATION:
Non-competitive inhibition is a form of mixed inhibition where the binding of the inhibitor to the enzyme reduces its activity but does not affect the binding of substrate. As a result, the extent of inhibition depends only on the concentration of the inhibitor. Vmax will decrease due to the inability for the reaction to proceed as efficiently, but Km will remain the same as the actual binding of the substrate, by definition, will still function properly.
A reaction has a certain Km and Vmax. If you add a noncompetitive inhibitor to the reaction, the Km will [increase / decrease / not change].
Not change
EXPLANATION:
Non-competitive inhibition is a form of mixed inhibition where the binding of the inhibitor to the enzyme reduces its activity but does not affect the binding of substrate. As a result, the extent of inhibition depends only on the concentration of the inhibitor. Vmax will decrease due to the inability for the reaction to proceed as efficiently, but Km will remain the same as the actual binding of the substrate, by definition, will still function properly.
A reaction has a certain Km and Vmax. If you add a competitive inhibitor to the reaction, the Vmax will [increase / decrease / not change].
Not change
Hexokinase catalyzes the reaction of _____ to _____.
turns glucose into glucose-6-phosphate
What reaction does Phosphoglucomutase catalyze?
the interconversion of glucose 1-phosphate and glucose 6-phosphate.
The glucose subunits within glycogen are bonded to each other through _____ linkages.
α─1,4
T/F:
The liver lacks glucose-6-phosphatase.
Fals
Glucose-6-phosphatase is found in ____ but is lacking in ____, although both these organs contain glycogen.
the Liver;
skeletal muscle
The enzyme glycogen phosphorylase [creates / breaks down] glycogen.
breaks down
The enzyme that catalyzes the rate-limiting step in Glycogenolysis is ____.
glycogen phosphorylase
Glycogen phosphorylase breaks down glycogen into:
glycogen, and glucose-1-phosphate
T/F:
Glucose-6-phosphate cannot freely diffuse out of the cell.
Tru.
That’s why glucose-6-phosphate is hydrolyzed into glucose.
VLDL transports _____, from _____ to ____.
triglycerides and cholesterol;
the liver;
adipose tissue
Fatty acids can be converted into glucose, via Gluconeogenesis; HOWEVER:
Only ODD-chained fatty acids (i.e., odd number of Carbons) can.
The time period, between the injection of viral nukes into the Host and the appearance of the first fully formed virion, is called the _____.
eclipse period
The “c” in the term cDNA stands for:
complementary
What is cDNA, or “complementary DNA”?
complementary DNA (cDNA) is DNA synthesized from a messenger RNA (mRNA) template in a reaction which is catalysed by the enzymes reverse transcriptase and DNA polymerase
Why do scientists or researchers use cDNA?
cDNA is often used to clone eukaryotic genes inside prokaryotes.
Where in nature is cDNA seen?
cDNA is produced naturally by retroviruses (such as HIV) and then integrated into the host’s genome, where it creates a provirus.
Introns and exons are terms that refer specifically to [tRNA / mRNA / rRNA / DNA].
mRNA
T/F:
Introns and exons are not features of eukaryotes.
Fals.
Introns and exons are found in organisms of all of the biological kingdoms. They are also found in viruses.
T/F:
After the virus invades the Host, Reverse transcriptase is synthesized by the Host cell’s machinery.
Fals.
Reverse transcriptase is Not made by eurkaryotic cells. The Retrovirus carries its own reverse transcriptase and brings it into the Host cell.
T/F:
Retroviruses are diploid.
tru.
B cells mature in this part of the body.
Bone marrow.
Bacterial growth when graphed, follows a _____-shaped curve.
S shaped
The 4 phases of the bacterial life cycle are:
- lag phase
- exponential growth phase
- plateau / stationary phase
- bacterial death phase
The chronological order of events, from a virus’ invasion into the Host cell, to viral replication, are:
- target cell binding (“tissue tropism”)
- Attachment via host cell’s surface surface receptors.
- Penetration
- Uncoating
- Viral synthesis
What does “tissue tropism” mean?
each virus (species) has a specific target tissue preference
What is translocation?
the rejoining of broken chromosomes’ ends