life at the cellular level (4) - energy (thermodynamics) Flashcards

1
Q

Give examples of types of energy

A

Heat
Light
Mechanical
Electrical

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2
Q

What is the first law of thermodynamics

A

Energy can be converted from one form to another but the total energy of the universe remains constant

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3
Q

What is the second law of thermodynamics

A

All energy transformations ultimately lead to more disorder in the universe, i.e. increase the entropy

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4
Q

What is entropy

A
The degree of disorder
 As usable energy decreases
unusable energy increases,
entropy increases
 Entropy is also a gauge of randomness or chaos within a closed system. As usable energy is irretrievably lost, disorganization, randomness and chaos increase.
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5
Q

How do cells maintain order

A

By performing lots of chemical reactions which require energy

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6
Q

What do cells use energy for

A

To grow and form complex molecules and systems

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7
Q

Do cells live in isolation

A

No, they are open systems, taking energy from the sun and food molecules to generate the order required for life

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8
Q

How do cells apply the 2nd law of thermodynamics

A

The chemical reactions that generate the cell’s order produce heat, which is discharged into the surrounding environment and disorders it, so the total entropy increases

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9
Q

What is Gibbs free energy

A

“useful”, or Free energy in a closed system can be defined by 3 quantities:
– Enthalpy, H – heat released to surroundings (reflects number/kind of bonds formed/broken)
– Entropy, S – randomness/disorder – Absolute temperature, T
G = H - TS

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10
Q

What can free energy change be used to define

A

The spontaneity of a reaction

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11
Q

When can spontaneous reactions occur

A

If a system:
– Gives up energy (water runs downhill spontaneously, giving up potential energy as it goes)
And/or
– Becomes more random and increases in entropy (complex structures decay spontaneously giving up potential energy)

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12
Q

What must a spontaneous process do to enthalpy and entropy

A

Decrease enthalpy (H) and/or increase entropy (S)

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13
Q

spontaneous reactions only occur if ΔG is

A

negative

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14
Q

what is the free energy change equation

A

ΔG = ΔH - TΔS

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15
Q

what does it mean if ΔG is -ve

A

the reaction releases energy

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16
Q

how much order do biological processes require

A

more rather than less, so reactions to generate proteins, DNA, cells, organs, etc, etc require reactions that have +ve ΔG

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17
Q

why do cells use a process called “energy coupling”

A

to carry out thermodynamically unfavourable reactions

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18
Q

what does ΔG = 0 mean

A

it is incompatible with life

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19
Q

do reactions reach equilibreium

A

no, as energy passes from the environment to the organism and back to the environment
This works because organisms use pathways of reactions: e.g. food molecules to excretory products
spontaneous reactions move towards equilibrium but do not reach equilibrium

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20
Q

what does life do to maintain a steady state

A

utilises series of reactions

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21
Q

what does free energy flow between

A

catabolic processes and anabolic processes allowing them to occur

22
Q

what is each step in metabolic pathways catalysed by

23
Q

what do enzymes do

A

function to selectively alter the rate of particular parts of metabolic pathways

24
Q

what are intermediate metabolites

A

tend to be compartments of several pathways

there aren’t many of them compared to the number of reactions that exist in the cells of our bodies

25
how much potential energy does glucose have and what does that mean
has a high potential energy and is used as a food molecule by many organisms
26
how can glucose be degraded
by heating in air, releasing its potential energy as heat starts off with high potential energy and ends with low potential energy glucose+6O2 -> 6CO2+H2O and releases heat The same reaction occurs in cells but in a series of small chemical reactions facilitated by enzymes
27
what do small reactions allow
the potential energy to be used or stored at a particular point along the pathway
28
what happens when ATP is converted into ADP
Free Energy is released, which is harnessed from this catabolic process to drive thermodynamically unfavourable reactions (+ΔG)
29
what is an exergonic reaction
a reaction that have a negative ∆G and release free energy
30
what is an endergonic reaction
Reactions that have a positive ∆G and require input of free energy
31
give an example of an exergonic reation
catabolic pathways
32
give an example of an endergonic reaction
anabolic pathways
33
why is a catabolic reaction exergonic
as it "saves" Free Energy within a system by forming ATP catabolic reactions are thermodynamically favourable reactions
34
why is an anabolic pathway endergonic
as it is "supplies" with Free Energy within a system by forming ADP through the conversion of ATP to ADP anabolic reactions are thermodynamically unfavourable reactions
35
what type of reaction is | ATP+H2O -> ADP+Pi
hydrolysis
36
what type of reaction is | ADP+Pi -> ATP+H2O
condensation
37
what has a higher potential energy ATP or ADP+Pi
ATP, so hydrolysis occurs with a decrease in Free Energy (exergonic) ADP to ATP condensation reaction requires Free Energy input (endergonic)
38
is a hydrolysis reaction endergonic or exergonic
exergonic
39
is a condensation reaction endergonic or exergonic
endergonic
40
ATP allows anabolic, thermodynamically unfavourable reactions, to
proceed through coupling of catabolic thermodynamically favourable reactions
41
what is phosphoenolypyruvate (PEP)
produced in an intermediate step during the process of glucose releasing its potential energy when degraded acts as an intermediate for a reaction that goes on to produce ATP during PEP to pyruvate conversion potential energy released from PEP to pyruvate conversion is "stored" in the form of ATP
42
what is the ΔG for the reaction PEP→pyruvate
-31.4kJ/mol
43
when is the potential energy of PEP "released"
it is converted into pyruvate
44
when is the potential energy of PEP "saved"
it is "saved" as potential energy in an ATP molecule
45
why is ATP called the "universal currency" of Free Energy
because energy flows through many biological pathways by utilising phosphoryl group transfer between molecules
46
why does potential energy in food molecules arise
because they contain large numbers of H atoms
47
give examples of molecules containing large numbers of H atoms
carbohydrates, glucose fatty acids, palmitate (palmitate has lots of H atoms making it similar to petroleum – another molecule that is rich in energy)
48
what will the oxidation of glucose release
electrons that spontaneously flow through a series of intermediate steps to another chemical species, such as O2 this can be described as an electron motive force (emf)
49
what is enf
describes that electrons can accomplish work as they pass through chemical intermediates
50
from the thousands of metabolic reactions that occur within the cell, how many activated carriers of energy are used
a small number this hints as the evolutionary background of metabolic processes these activated carriers act as coenzymes in biochemical pathways to facilitate fuel oxidation and biosynthesis reactions