Lecture Exam 3 Flashcards

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1
Q

Proteobacteria

A

Gram negative
Based on rRNA sequences
Derived from photosynthetic ancestors

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2
Q

Alpha proteobacteria

A
Azospirilum
Rhizobium
Nitrobacter
Rickeitsia 
Rickeitsia rickettsii 
Brucella 
Brucella abortus 
Brucella melitensis 
Wolbachia
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3
Q

Azospirilum

A

Soil organism
Nitrogen fixer
Symbiotic fixation; with roots of tropical grasses (corn)

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4
Q

Rhizobium

A

Soil organism
Nitrogen fixer
Symbiotic with legumes (beans, peas, clover, etc)

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5
Q

Nitrobacter

A

Soil organism
Not symbiotic
Chemoautotroph- using in organic compounds as its energy source
Take ammonia (NH3) or NO2 to NO3 (nitrification)

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6
Q

Rickeitsia

A

Rods/coccbicilli
Obligate intercellular parasite- cannot live outside of host cells
Requires an insect or tick as a vector (animal that carries it)

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7
Q

Rickeitsia rickettsii

A
Rocky Mountain spotted fever
Vectored by ticks
More common in the southeastern US
Symptoms: rash on palm and soles, fever, headache
Does respond to antibiotic therapy
No vaccine
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8
Q

Brucella

A

Coccobicillic- no flagella
Obligate parasite of mammals
Zoonose- animal reservoir of disease
Aerobic

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9
Q

Brucella abortus

A

Also known as Brucellosis
Causes cattle to spontaneous miscarry
Infects cattle, deer, elk, and bison

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10
Q

Brucella melitensis

A
Causes disease in humans
Causes undulant fever
Dairy, goats, sheep
Undulating fever- night sweats, aches and pains, fever goes up then down then up
Responds to antibiotics
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11
Q

Wolbachia

A

Obligate intercellular parasite
In insects
Very common
Affects the reproduction of the insect. Can cause more eggs, no change, or less eggs
Complex
*release of infected mosquitoes to control Zika and dengue fever

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12
Q

Beta proteobacteria

A

Bordella pertussis
Neisseria
N. Meningititis

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13
Q

Bordella pertussis

A

Coccobacilli
Capsule
Causes whooping cough (produces toxins that kill off the cillia in the trachea, mucous accumulate in lungs, and can go systemic)
Starts as cold symptoms, but becomes violent coughing with “whooping” inhalation
Can last weeks
Can kill infants, adults can be asymptotic
Can result in brain damaged kids
Does respond to antibiotics if caught early but not late
There is a vaccine for it

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14
Q

Neisseria

A

Diplococcus
Has fimbriae- used for attachment to mucous membranes
Neisseria gonorrhoeae- causes gonorrhea- STD “the clap”
-attacks mucosa of the urogenital track, oral cavity, anal, conjunctiva of the eye
- spread mainly by males
- diagnosed by pus discharge in males
- females it’s often asymptotic
-• can affect the cervix and cause reproductive issues
-• can cause pelvic inflammatory disease
- does respond to antibiotics but developing a resistance
- no developed immunity, can get it more than once

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15
Q

N. Meningitis

A

Diplococcus
Bacterial megingitis
40% of the population has it in their nose (asymptotic carriers)
Bacteremia to bacteria in blood stream, which produces a variety of toxins that result in a headache, that then produces a stiff neck, then a coma, then death. All of that can happen in hours
Usually hits infants under 2 years old
Does respond to antibiotics, but has to be caught quickly
Deaf and brain damage

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16
Q

Gamma proteobacteria

A

Legionella
Pseudomonas
P. Aeruginosa
Vibrio cholerae

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17
Q

Legionella

A

Sometimes called “legionare’s disease”
Symptoms are those of pneumonia (causes pneumonia)
Causes by contaminated water supplies aerosols
Difficult to culture

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18
Q

Pseudomonas

A
Gram negative rods
Have polar flagella
Common in various environments (water and soil)
They are diverse
Some cause plant diseases
One metabolic trick is they can digest unusual carbon sources
Antibiotic resistant
Not normally pathogenic
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19
Q

P. Aeruginosa

A

If you have a wound, especially burns, it will get in there
Abcesses- nor on pets
Urinary tract infections
You can get septicemia to toxins in blood to toxic shock syndrome

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20
Q

Vibrio cholerae

A

Curved rods- vibrio
It is a facultative anaerobe
Produces an exotoxin in your small intestine
Exotoxin stimulates secretion of water and electrocytes
DFH- 10-20 liters a day, can kill you even if you stay hydrated, physicians refer to this as “rice water stool”
Common inhabitants of brackish (salty water that is not salty enough to keep from drinking) water and fresh water
What killed most of the people on the Oregon trail

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21
Q

Enterics

A
Gram negative rods
Facultative anaerobes
Fermenters
They tend to have fibriae 
Attached to the intestines
E. Coli
Salmonella enterica 
Yersiha enterocolitica
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22
Q

E. Coli

A
Normally it’s ok 
Capable of causing mild diarrhea
We use E. Coli as an indicator of food and water contamination 
But there is a stain of e. Coli called 0157: H2. It will kill you
- produces an endotoxin
- “enterohemorrhagic”
- DFH
- most commonly kills elderly and kids
- in apple juice by contamination
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23
Q

Salmonella enterica

A

Difficult genus to classify
High genetic diversity
Use serovaris to diagnose them (identified with antibodies)
Dont normally find it in our intestines, but in birds and reptiles
Common source of food poisoning
Sometimes called “salmonellosis” and non-typhoidal- DFH
typhoidal-
-causes typhoid fever
- serovaris: S. Typhi
- is not carried by birds (not a zoonose)
- human to human- contact and food
- gets inside of white blood cells and spreads
- 2-3 week incubation period
- • fever headache, ulcerated intestines
- will kill people
- can have asymptotic carriers- likes to settle into the gallbladder
-“Typhoid Mary”- Boston in the early 1900s she was a domestic worker, everyone got typhoid fever.
- early study in Epidemiology

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24
Q

Y. Enterocolitica

A
In the intestines from domestic animals
Food contamination
Psycherotroph- will grow in the fridge
Fever, diarrhea, abdominal pain, etc
Can last 2 weeks
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25
Q

Firmicutes

A

Low G+C ratio
Rods and produce endospores
Bacillus- facultative anaerobe, non- motile, endospores

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26
Q

B. Anthracis

A
Anthrax
Soil and livestock
Cutaneous form- “coal black lesions”
Pulmonary/lung- 100% mortality rate
Gastrointestinal
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27
Q

B. Cereus

A

Food poisoning
Produce toxins- spores
Diarrhea (most common in restaurant rice)

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28
Q

B. Thuringiensis

A

Produces a toxin- Bt toxin (protein)
Kills caterpillars
Biocontrol- harmless to humans- kills bugs
Genetically modified organisms
- corn and few other crops to produce the Bt toxin

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29
Q

Clostridium

A
Endospore forming rods
Obligate anaerobe 
Soil organism
Spores are tough and hard to kill- survive 120 degrees for 15 minutes
C. Tetani 
C. Botulinum
C. Perfringens
C. Difficile
30
Q

C. Tetani

A
Causes tetanus
Associated with puncture wounds- anaerobic environments
Grow to produce a neurotoxin (inhibits exocytosis of neurotransmitters of inhibitory neurons- muscles- “tetanospasmin”
- muscle contracts, but can’t relax
-• starts with jaw muscles (lock jaw)
-•- proceeds from there
-•- death from respiratory failure
-•- incredibly painful
Vaccine
Antiserum
31
Q

C. Botulinum

A
Latin for sausage
Botulism
Flacio paralysis
Neurotoxin 
Canned foods and sausage (spores survive canning)
1-2 day incubation
Lasts 1-10 days
Toxin destroy by heat
Nitrites (sausage) inhibit sporulation
Rare
Not in acid foods
Honey- don’t give to infants (infant botulism)
32
Q

C. Perfrigens

A
Causes gas gangrene
Cytotoxin- kills cells
Wound- anaerobic environment
- bacterium grows
- cytotoxin
- kills tissue
- bacterium grows
Debridment/amputation
33
Q

C. Difficile

A
Intestines- can be a component of the normal intestinal flora
Antibiotics- wipe out normal flora
Party time for C. Diff
Toxin- DFH
Nosocomial (hospital acquired) infection
34
Q

Lactobacillus

A

Acidophile
Aerotolerant anaerobe
Normal flora- oral, intestinal, vagina
Foods- yogurt, pickles, sauerkraut, kimchi

35
Q

Staphylococcus

A
Grape like clusters
Facultative anaerobes 
Tolerant high osmoticum (halo phones)
On skin- up your nose
S. Aureus
36
Q

S. Aureus

A
Food poisoning- produces a toxin- diarrhea 
Ham/ custard
Wounds- secondary infections
Antibiotic resistance 
MRSA- Methicillin Resistant S. Aureus
37
Q

Streptococcus

A
Chains
Aerotolerant anaerobe
Good:
- lactic acid from fermentation (cheese)
Bad:
- strep throat 
- scarlet fever
- pneumococcal pneumonia
- necrotizing fasciitis 
Toxins- hemolytic, erthrogenic (scarlet fever), coagulate
38
Q

Mycoplasma

A
No cell wall
Pleomorphic- shape varies
Sometimes filamenrous
Small- 0.1-0.25 nanometers 
Colonies are small, but you can culture them- look like fried eggs
39
Q

M. Pneumoniae

A

Mild pneumonia
Sometimes called “walking pneumonia”
Can cause arthritis in goats

40
Q

Streptomyces

A

Soil organism

Source of streptomycin- good source of antibiotics

41
Q

Mycobacteria

A
Acid-fast microbe
Waxy cell walls
Slow growing because of waxy walls
M. Tuberculosis
M. Leprae
42
Q

M. Tuberculosis

A

Deadly lung infection
Inhale bacteria
- aerosols
Connective tissue grows around lumps of bacteria (tubercles)
-tubercles- “little potatoes”
Antibiotic therapy
But antibiotic resistance is now happening

43
Q

M. Leprae

A

Causes leprosy/Hansen’s disease
Affects the peripheral nervous system
Obligate parasite- grows on armadillos

44
Q

Corynebacterium

A

Pleomorphic
Good chance it’s in your armpit
Responsible for arm out odor
C. Diphtheriae

45
Q

C. Diphtheriae

A

Upper respiratory tract infection
Diphtheria
Droplet transmission
Forms tough Greyson membrane in the back of the throat
Vaccine
Pre-vaccine it was the number one kid killer

46
Q

Archaea

A

Figured out in the 70s
Back to genetic evidence (RNA sequence)
Many biochemical differences
Both bacteria and eukaryia
- when looking at lipid membranes they have an “ester” linkage
- archaea have an ester linkage in their phospholipids
- are in pretty much any habitants
- many are extremophiles- live in 100 degree or more, some are halophiles, some are acidophilus, some only live in alkaline environments
- do photosynthesis without using chlorophyll and instead use bacteriorhodosin(purple, not green)
- many are mutualistic, especially in ruminants- helps with digestion of cellulose- h2+CO2, methanogens- 4H2+CO2-CH4+2H2O
- also in the human gut- 1 in 10 are archaea, many are methanogens
No pathogens that we know of

47
Q

Kingdom fungi

A

Cell walls made of chitin
Cells organized into tubes (hypha/hyphae/mycelium)
Filaments
Thalallus- organ or structure (mushroom)
Hyphae can be either coencyte- nuclei loose in cytoplasm
Hyphae can be septate- nuclei have separate capartments
Nutrition: chemoheterotrophs- their absorbing chemicals as food, decay organisms, parasites, utilize many odd C source
Reproduction: asexually- without sex, fragmentation- tear them apart, yeasts- budding, also produce spores
Sexual reproduction: life cycle is backwards from us- spend most of their life cycle as a haploid(1N), diploid (2N)- short, brief
Medical mycology- “study of fungi”- mycosis- fungal infection-usually slow growing, cutaneous- ringworm, athletes foot, keratinase- enzyme that breaks down keratin
Subcutaneous mycosis- more rare, wounds, systemic mycosis- deep tissue- most common form in the lungs- histoplasmosis- most common if agriculture (hay baling)

48
Q

Microsporidian

A
Obligate intercellular parasites
Single celled
Dont have mitrochondria
No sex
Conjunctivitis- pink eye
Diarrhea
49
Q

Yersinia pestis

A
Bubonic plague 
Black Plague
Zoonose- animal reservoir 
Bubonic: “bubos”- swollen lymph nodes, black, painful, high fever, 75% death rate
Pneumonic- lungs, inhalation, 100% fatal
50
Q

Helicobacter pylori

A
Rod
Microaerophile
Flagella
Peptic ulcer disease
Barry marshal- biopsy always, Koch’s postulates, antibiotic therapy, Nobel prize
51
Q

Cyanobacteria

A
Blue-green algae
H2O + CO2- sugar+ O2
Photosynthesis- regular
N fixation
Ecologically huge
Purple sulfur bacteria 
Anoxygenic photosynthesis 
Dont produce O2
H2S + CO2- sugar+ S2
52
Q

Chlamydia

A
STD- all too common
Obligate intracellular parasite
No vector 
Non- gonococcal urethritis
Trachoma- blindness
53
Q

Spirocheates

A

Axial filaments
O2 requirement varies
Aerobes- facultative anaerobe

54
Q

Treponema pallidum

A

Syphilis- STD
3 phases:
Primary
- chancre sore, open sore at site of infection, painless, might not be obvious
Secondary
- oral sores, rash, very infectious, lantent- no obvious symptoms 2-4 years old
Tertiary
- gummas, skin lesion, weakened aorta, blond, neurosyphilis- CNS, painful- crazy
Antibiotic resistance

55
Q

Borrelia

A
Lyme disease
Zoonose- deer to ticks to humans
Bulls eye rash at bite site 
Flu like symptoms 
Fatigue- neurological problems
Heart
Meningitis 
Antibiotics are not always effective
Difficult to diagnose
56
Q

G+C ratio

A

DNA base pairing

57
Q

Phylum zyhomycota

A

Sexual reproduction is via zygosporez
Coenoctic- no cross walls
Asexual stage is via sporanglospores
No make it female rather mating types (+/-)
2 hypo is nuclei fuse, which gets us back to diploid, the perform meiosis to become haploid again

58
Q

Rhizopus

A

Can infect wounds

Inhalation of spores can be bad- histoplasmosis

59
Q

Ascomycota

A

Sac fungi
Yeast
Sexual stage- consists of 8 ascospores in a structure called Ascus
Asexual conidiospores
Diseases: athletes foot, ring worm, yeast infection, penicilium, ergot- plant disease of grasses (rye and wheat- fungus replaces the grain)

60
Q

Basidiomycota

A

Club fungi- mushrooms and puffballs and stinkhorns
Sexual stage- basidiospores
Fuming body- mushroom
Diseases: dandruff, meningitis caused by cryptococcus from epiduralanesthetc

61
Q

Algae

A

Photosynthetic- live in water (fresh and marine)
Medically important- dinoflagellates- unicellular floaters
Blooms- turn H2O red
Clams are filter feeders and concentrate neurotoxins
You eat the clam- you get paralytic shell fish poisoning

62
Q

Kingdom protista

A

Animals like: protozoan
Unicellular- diverse
Asexual- mitosis/fission, shizogony- multiple fission
Sexual reproduction: crazy diverse- conjugation- haploid nuclei, swap micronuceli, then fuse the macro and micronuceli, diploid, meiosis, haploid
Gametocytes- haploid sex cells, like sperm and egg, but look the same

63
Q

Archaezoa

A

Used to be mastigophora
Have flagella
Typically spindle shaped- cigar shape
Giardia

64
Q

Giardia

A

Has flagella
Undulating membrane
DFH
“Beaver fever”

65
Q

Phylum platyhelmenthes

A

Trematodes (classes within phylum)
Sometimes referred to as “flukes” because they are leaf shaped
Paragonimus- lung fluke
Blood fluke- shistomas/schistosomiasis

66
Q

Blood fluke

A
Humans are definitive hossnails are the alternate host
Problem in tropic (S. America)
250x10^6 infected
Larvae can borrow through your skin
Bladder and urinary system
Intestines
Systemic
Can get into the brain
67
Q

Class cestoda

A

Tapeworms
Taenia- beef tapeworm
Simple
Dont have a gut, brain, eyes, etc
Live in intestines- absorb nutrients
Can get 6 meters long
Proglottids fill up with eggs
Eggs in feces
Get eaten by cows
Eggs hatch in cow
Larvae migrate to muscle tissue and go format
“Measly beef” cook steak rare and encrust wake up in you
They can get into the diaphragm and eye muscles (rare)
Pork tapeworm- common in Mexico and Latin America, intestines, brain, eyes

68
Q

Phylum nematoda

A
Round worms
Tube gut (mouth and anus)
Many many are in soil
Parasitic too
Enterobius
Ascaris
Necktie
Truchinella
69
Q

Enterobius

A
Pin worms
1-2 cm
Size of a pin
Preferred habitat is large intestines
Playing in the dirt and not washing your hands
Mostly a problem with kids
Scotch tape test
70
Q

Ascaris

A

30 cm long
Small intestines
Eat eggs- larvae- lungs- throat- intestines-sex- eggs in feces
Adults can escape- anus or Jose or puncture small intestines

71
Q

Necator

A
Hookworm
1 cm or so
One end hooked
Common in SE US
Suck blood in intestines
Eggs escape in feces
Larvae in soil
Can borrow through skin
72
Q

Trichinella/ trichinosis

A

Pigs/ people
Adults in intestines- sex
Larvae migrate to muscle tissue
Encyst