Lecture 25 Flashcards

1
Q

Definitions of Novelty

A
  • morphologically or physiologically new and qualitatively distinct feature
  • a key feature that allows the lineage carrying it to enter a new adaptive zone
  • new homolog. Evolved from homologous fins, but contain new homologs shared with other limbs
  • ex: ancestral globin gene gave rise to new family member myoglobin and hemoglobin family of new gene homologs
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2
Q

Ways of Seeking Novel Features in Evolution

A
  • comparative anatomy
  • features of fossil organisms
  • features in development
  • evolution of genes
  • where an organism sits in the phylogenetic tree
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3
Q

Some Major Novelties in Evolution

A
  • origins of animal body plans
  • mouth parts of insects
  • tetrapod limbs
  • body plan of whales
  • hominid upright anatomy and walking
  • human brain
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4
Q

Organisms Arise From Process of Development

A
  • evolutionary change has to occur through generation by generation of individuals
  • development must change for evolution to occur
  • gene control of development must evolve for development to evolve-heritable change
  • mechanisms of development are under selection and may influence or constrain evolutionary possibilities
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5
Q

Development Itself

A
  • will have features that constrain what evolution can do
  • selection doesn’t just operate at a single stage in an organism’s life
  • operates all the way through
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6
Q

Symmetry Breaking

A
  • mostly homogenous sphere egg–>development must produce symmetry breaking to produce body axis and differentiation of cells etc.
  • genes and signaling systems exist for all three axes D/V set up first, A/P set up second and L/R set up last
  • commonly shared systems-shared by echinoderms, vertebrates, mollusks and likely others
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7
Q

Standard Selection

A
  • phenotypes are the sorting of genes so genes contribute to appearance of phenotypes and there is selection for phenotypes
  • if development is included genes–>development (has rules)–>phenotype and there is selection for both development and phenotype
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8
Q

Developmental Constraints

A
  • can selection do anything or is it limited by existing genetics and developmental mechanisms?
  • can organisms actually always be moved by variation and selection to optima or are some apparently possible phenotypes unreachable?
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9
Q

All Animal Phyla

A
  • studied share families of regulatory genes used in development
  • share similar requirements for development from a basic set up, eggs plus sperm; i.e. development of a multicellular body from a single cell
  • share similar gene expression and morphogenetic strategies (i.e. alternate ways of wiring shared gene systems (networks) produces specifically distinct final development outcomes
  • distinct phylogenetic pattern among developmental modes -that’s what we expect from a common descent from a single animal ancestor
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10
Q

Genes in the Control of Development

A
  • seen in effects of mutations of genes that specifically affect development
  • produce phenotypes-are thus targets of natural selection
  • can be cloned and their roles and evolution studied
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11
Q

What Embryo’s Have to Accomplish

A
  • set up body axes, anterior-posterior, dorsal-ventral, left-right
  • turn on an ordered pattern of gene expression
  • establish body regions and control cell identities and positions in those regions
  • differentiate cells that have specific locations, have defined fates, or talk to each other
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12
Q

Developmental Regulatory Genes and the Evolution of Development

A
  • evo-devo is really only possible if there are relatively few key control genes
  • evo-devo only possible if pre-existing genes can be co-opted and used in a new way to construct a new developmental pathway
  • kinds of genes involved: all elements of basic gene regulatory machinery
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13
Q

Developmental Regulators

A
  • transcription factors
  • growth factors
  • membrane-bound signal receptors
  • signal cascades
  • enzymes that regulate protein functions by protein modification-kinases and phosphatases
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14
Q

Instructions to Build a Fly

A
  • egg born already knowing which end is front and which is back.
  • due to Maternal gene in anterior end (14 total)
  • start to set up patterns of differentiation in center of embryo
  • gap genes (6)–>pair rule genes (8; broad divisions set up)–>segment polarity genes (8; segment facing forward or backward?)–>hox genes (identify body segments)
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15
Q

Hox Genes

A
  • at molecular level each encodes for a protein that binds to DNA
  • each has three domains that act together to bind to the wide groove of DNA where they can influence genes and promote transcription of downstream gene
  • example of a class of major regulatory genes in development that have played important roles in evolution
  • present in animals
  • clustered in chromosome organization
  • in mammals genome duplication has produced 4 such clusters and gene number up to 13 by amplification of 9-10 group
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16
Q

Function of Hox Proteins

A
  • hydrogen bonds between complementary bases
  • the three helix domains of the hbox in the wide groove of the DNA
  • the helix that lies across the groove is the recognition helix
  • the sequence of amino acids in it determines what DNA binding site the protein binds to
17
Q

Signaling

A
  • strategy of development as we saw with limb buds
  • one group of cells signals to another
  • cell expresses a gene that produces a diffusible ligand
  • responding cell has a cell surface receptor for the ligand
  • cytoplasmic signal cascade activates transcription factor then turns on transcription in target gene critical for developmental step
18
Q

Simple Positive Transcription Output

A
  • transcription factor + start site on DNA

- turns gene on

19
Q

Simple Negative Transcription Output

A
  • transcription factor + block

- turns gene off

20
Q

Complex Positive Transcription Output

A

-two negatives result in a positve

21
Q

Butterflies vs. Flies

A
  • adult: flies have single pair of wings and butterflies have two pairs
  • developmental styles: three distinct forms of development in insects. Flies and butterflies share the third with an important distinction
  • larva: caterpillars have five pairs of abdominal legs as well as three thoracic pairs
22
Q

Drosophila Haltere

A
  • pull off and can’t stabilize
  • can’t fly properly
  • don’t provide power flight but are somehow balance organisms that have evolved from rear wings
  • derived from a wing; not a wing but has a function
23
Q

Paleozoic Primitive Wings Insects

A
  • segment identity not as tightly regulated as in modern insects
  • some had legs on abdomen; others had wings on abdominal segments of their larvae
  • these identify functions and outcomes are controlled by Hox genes, and their regulation continues to evolve
24
Q

Cateripllars

A
  • re-evolve abdominal legs by trick of double inhibition to get a positive outcome where it was advantageous
  • old developmental machinery for growing a leg on an segment was not lost, it was repressed in abdominal segments
  • leg outgrowth requires expression of Distal-less gene
  • Dll is negatively regulated by Hox AbdA=repression 1
  • Drosophila AbdA and AbdB are expressed in abdominal segments, Dll is not
25
Q

Dll Expression in Young Caterpillar

A

-holes in AbdA and AbdB expression when Dll will be allowed to be expressed and lead to legs

26
Q

Two Wings vs. Four

A
  • primitive number of wings among living insects is 4 but flies have 2
  • Hox Ubx is expressed in Drosophila T3 segment where it converts rear wing disc into haltere
  • wing disc evolved to read Ubx to generate distinct different pattern of development
  • wing development was under control of genes controlled by Ubx; in flies the downstream regulation system changed. Ubx still upstream regulator but genes downstream read it differently in terms of developmental path they follow
27
Q

Butterflies

A
  • jaws express Dll as a key regulator of outgrowth
  • thoracic legs express Dll
  • in each abdominal segment Dll is being expressed in two dots on each size
  • differs from drosophila larva because there is no Dll expression pattern along abdomen–it’s repressed in drosophila
28
Q

Pathway Evolution Summary

A

-see notes to memorize pathways

29
Q

Gene Regulatory Network

A
  • GRN
  • regulatory genes act in concert
  • genes in a network influence the expression of other genes to produce an outcome of gene expression that affects the behavior or identity of cells in a developing organism
  • can be extremely conserved in evolution and still produce different outcomes because of some modification at the end
  • networks are flexible at downstream ends especially at what output could be
  • upstream less likely to be shifted because would produce larger effects if there’s a mutation up there
  • thus we see highly conserved roles for Hox genes in laying out animal body axes, but the structures of these bodies can differ