L6 Flashcards

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1
Q

What is the classic way of making maps

A

using three point test crosses; by utilizing the information derived from crossing a triple heterozygote with a triply recessive tester

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2
Q

true or false, recombination frequencies from each pair of genes can be used to locate their relative positions

A

true; also allows us to establish whether these genes belong to the same or different linkage groups

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3
Q

true or false, three point test cross allows us to determine whether crossing over in one region of the chromosome has any effect on crossing over in another region

A

true

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4
Q

what do you call the possible interaction in a three point test cross

A

interference

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5
Q

why are using a pair of genes for mapping a chromosome not as efficient as when three genes are used

A

this is because numerous two point crosses must be carried out and because double crossovers are missed

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6
Q

why is three point test cross more efficient in comparison to a two point test cross

A

with three genes the order of the genes can be determined using a single set of offspring and double crossovers can usually be detected, this provides a more accurate map distances

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7
Q

what does it mean when the recombination frequency of the two genes are significantly less than 50%

A

means they are linked

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8
Q

what does it mean when the two genes are greater than 50%

A

means that the genes are independently being assorted and are thus unlinked and must be drawn on separate chromosomes

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9
Q

what type of genotype do we want our homozygous recessive test cross to be crossed to

A

w+/w r+/r (can be other symbols, but one wild type and one recessive)

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10
Q

true or false, map distances are not exactly additive, eg. distances between v and ct and ct and cv add up to 19.6, this is greater than the calculated 18.5

A

true

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11
Q

why are map distances not exactly additive

A

this is because the progeny of double crossovers are the same as the parents with respect to the two outside markers

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12
Q

true or false, recombinant progeny of a double cross over have their outer loci the same as the parental type

A

true

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13
Q

how do you account for the double cross over phenomenon in two genes; how do you adjust for their map units

A

put the observed output for the double crossovers twice in the equation then sum it up and divide by the total number of progeny

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14
Q

Since map distances are based on the recombination rates, how will multiple crossovers that have remained undetected, how can we overcome this implication

A

Can be overcome in two ways:

  • insert more markers between the genes in question
  • use mapping functions that correct for multiple cross over products
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15
Q

what is interference

A

it is when the cross over in one region inhibits the cross over in other region

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16
Q

how do you calculate the expected frequency of recombination

A

multiply the two pairs of genes that are not crossing over together; their recombination frequency (not in %)

17
Q

How do you calculate the expected double crossover values

A

multiply the expected frequency of crossing over with the total number of progeny

18
Q

how do you calculate the coefficient of coincidence

A

observed number of double crossovers (total)/ expected number of double cross overs

19
Q

How do you calculate the Interference value

A

1 - coefficient of coincidence

20
Q

What does the value of interference mean, eg. if I= 34%

A

This indicates that 34% of the expected double crossover progeny were not observed because of interference

21
Q

What does it mean when I= 0

A

this means that there is no interference ( observed and expected frequencies are equal)

22
Q

What does it mean when I = 1

A

this means that there is complete interference, with no observed double recombinants

23
Q

true or false, I is usually < 1, that is there is fewer double recombinants expected

A

true