Infectious Diseases Flashcards

1
Q

How does the keratinised intact epidermis of the skin protect against infection?

A

Mechanical barrier, low pH, produces antimicrobial fatty acids and defensins

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2
Q

The GI tract has numerous defensive systems against infection. What are three ways that pathogens may establish symptomatic GI disease?

A
  • Toxin production
  • Bacterial colonisation and toxin production
  • Adhesion and mucosal invasion
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3
Q

What are the five routes of entry of microbes?

A

Skin, GI tract, Respiratory tract, Urogenital tract, Vertical transmission

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4
Q

What are six strategies of immune evasion by microbes?

A
  • Antigenic variation
  • Inactivating antibodies or complement
  • Resisting phagocytosis
  • Suppressing the host adaptive immune response
  • Establishing latency
  • Infecting and disabling or killing immune cells
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5
Q

What are three mechanisms by which viruses damage or kill the host cells they have infected?

A
  • Direct cytopathic effects (e.g. preventing synthesis of critical host macromolecules, activating pro-apoptotic pathways)
  • Antiviral immune responses
  • Transformation of the infected cell (oncogenic viruses)
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6
Q

What is quorum sensing in bacteria?

A

A process by which bacteria coordinately regulate gene expression within a large population through the secretion of autoinducer molecules.

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7
Q

What are two surface structures bacteria use to attach to host cells and tissues?

A
  • Adhesins
  • Pili (with a variable tip fibrillum)
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8
Q

What is bacterial endotoxin?

A

A lipopolysaccharide (LPS) in the outer membrane of gram-negative bacteria that both stimulates host immune responses and injures the host (generally by over stimulation). Specifically lipid A, the part of LPS that anchors it in the host cell membrane has the endotoxin activity.

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9
Q

What are three broad categories of exotoxins?

A
  • Enzymes
  • Toxins that alter intracellular signalling or regulatory pathways (usually enzymatic A subunit and binding B subunit that binds cell surface receptors and delivers A subunit into the cytoplasm)
  • Superantigens
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10
Q

What are the five major histologic patterns of tissue reaction in infections?

A
  • Suppurative inflammation
  • Mononuclear and granulomatous inflammation
  • Cytopathic-cytoproliferative reaction
  • Tissue necrosis
  • Chronic inflammation and scaring
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11
Q

What is suppurative inflammation characterised by and what kind of infections tend to cause this?

A

Increased vascular permeability and leukocytic infiltration, predominantly of neutrophils. Mostly extracellular gram-positive cocci and gram-negative rods

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12
Q

What is the acute development of predominantly mononuclear infiltrates often in response to?

A

Viruses, intracellular bacteria or intracellular parasites

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13
Q

What are two organisms that secrete powerful toxins which cause such rapid and severe necrosis that tissue damage is the dominant feature of infection?

A

Clostridium perfringens and corynebacterium diphtheriae

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14
Q

The diagnosis of mumps is usually made clinically (pain and swelling of salivary gland, aseptic meningitis, testis, ovary and pancreatic manifestations), what can be used for definitive diagnosis?

A

Serology or detection of viral RNA in salvia

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15
Q

The diagnosis of poliovirus can be made by viral culture, or detection of viral RNA in throat secretions or stool, or by serology.
What is the range of manifestations it can present with?

A

Most are asymptomatic, then from mild self-limited infections to paralysis of limb muscles and respiratory muscles. (about 1 in 100 will invade the CNS)

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16
Q

Viral hemorrhagic fever is a severe life-threatening multisystem syndrome in which there is vascular damage leading to widespread haemorrhage and shock. Humans are incidental hosts for most virus that cause this. What is a famous example of one that can transmit human to human?

A

Ebola virus

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17
Q

The clinical manifestations of dengue virus infection vary from fever with headache, macular rash and severe myalgias (breakbone fever) to severe dengue with bleeding, liver failure, reduced consciousness, organ failure and plasma leakage leading to shock and respiratory distress.
What is believed to cause most severe cases of dengue

A

Reinfection with a different strain to one of the four serotypes in a person who has already been infected before. (Thought being cross-reactive antibodies enhance uptake of virus into macrophages)

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18
Q

VZV is diagnosed by viral culture, PCR, or detection of viral antigens in cells scraped from superficial lesions.
Where does it establish a latent infection?

A

In sensory ganglia, particularly in neurons and satellite cells around neurons in the dorsal root ganglia

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19
Q

For the following four forms of CMV infection, describe the clinical manifestations and in the indicated list the laboratory tests that may be performed:
1. Congenital infections (and tests)
2. Perinatal infections
3. CMV mononucleosis (and tests)
4. CMV in immunosuppressed adults (and tests)

A
  1. 95% asymptomatic. Cytomegalic inclusion disease - IUGR, jaundice, hepatosplenomegaly, anaemia, thrombocytopenia, encephalitis. Fatal cases often microcephaly. Survivors often have permanent deficits. (viral culture or PCR amplification of viral DNA in urine or saliva)
  2. Usually asymptomatic but will shed virus for months to years. Rarely interstitial pneumonitis, FTT, rash or hepatitis
  3. Nearly always asymptomatic. Most common manifestation is mononucleosis-like illness (serology)
  4. Serious, life-threatening disseminated CMV primarily pneumonitis (can lead to acute RDS) and colitis (necrosis and ulceration can lead to pseudomembranes and debilitating diarrhoea). (Characteristic morphological alterations in tissue secretions, viral culture, rising antiviral titre, PCR based detection of CMV DNA)
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20
Q

What is the characteristic morphology of cells infected with CMV?

A

Often enlarged, cellular and nuclear pleomorphism. Prominent intranuclear basophilic inclusions usually set off from the nuclear membrane by a clear halo.

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21
Q

What three findings, in the order of increasing specificity, does the diagnosis of EBV depend on?

A
  1. lymphocytosis with the characteristic atypical lymphocytes in peripheral blood
  2. a positive heterophile antibody reaction (monospot test)
  3. a rising titre of specific antibodies for EBV antigens (viral capsid antigens, early antigens or EBNA)
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22
Q

Staphylococcus aureus (g +ve) produces a multitude of virulence factors including super-antigens. It causes pyogenic inflammation that is distinctive for it’s local destruction of host tissue. What are 6 forms S. aureus infection can take?

A
  • Skin infections (abscess, furuncle, carbuncle, impetigo, wounds)
  • Food poisoning
  • Respiratory infection
  • Osteomyelitis
  • Endocarditis
  • Toxic shock syndrome
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23
Q

Streptococci (g +ve) cause suppurative infections of the skin (eg erysipelas, scarlet fever), oropharynx (eg streptococcal pharyngitis), lungs and heart valves. They are also responsible of a number of post infectious syndromes such as:

A

Rheumatic fever, poststreptococcal glomerulonephritis and erythema nodosum

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24
Q

What bacteria (and of what subgroup) can cause pharyngitis, scarlet fever, erysipelas, impetigo, rheumatic fever, toxic shock syndrome, necrotising fasciitis and glomerulonephritis?

A

Streptococcus pyogenes (B-haemolytic group A)

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25
Q

Enterococci are low-virulence bacteria with an antiphagocytic capsule. They have emerged as pathogens primarily due to their resistance to antibiotics. What other class is of bacteria are they difficult to morphologically distinguish from and why?

A

Streptococci - as are also gram positive cocci that grow in pairs and chains

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26
Q

Briefly describe how immunity to M. tuberculosis (acid-fast, weakly g +ve) is primarily mediated

A

By Th1 cells (can take 3 weeks to start), which stimulate macrophages to kill the bacteria (even those within phagosomes where maturity was blocked by the bacterium). Accompanying tissue destruction.

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27
Q

How is TB tested for in 1. active infection and 2. latent infection?

A
  1. Culture gold standard (liquid 2 weeks, solid agar 3-6 weeks). Acid fast smears and PCR (DNA amplification) can give fast results but less sensitive
  2. IFN-y release assays (IGRAs) or tubercilin skin test. Note certain viral infections cause false negatives. False positives rare with IGRAs but with tubercilin can be result if BCG vaccine or atypical mycobacteria exposure.
28
Q

Briefly describe some clinical features of pulmonary 1. Primary TB (previously unexposed person) and 2. Secondary TB (reactivated or reexposed)
(Remembering can spread and caseate in other organs and/or cause miliary TB)

A
  1. 5% develop clinically significant disease. Most often contained. Progressive often resembles an acute bacterial pneumonia with consolidation of the lobe, hilar adenopathy and pleural effusion.
  2. Classically involves apex of upper lobes. Caviation occurs readily. Malaise, anorexia, weight loss, fever. Increasing amounts of sputum, half experience haemoptysis, pleuritic pain from extension to pleural surfaces.
29
Q

What are the two patterns of disease mycobacterium leprae can take?

A

Tuberculoid (milder, paucibacillary and asymmetrical) and lepromatous (multibacillary, symmetrical)

30
Q

Describe the manifestations of syphilis in the following stages:
1. Primary
2. Secondary
3. Tertiary
4. Congenital

A
  1. Nontender chancre (3 weeks post infection)
  2. Painless, superficial lesions of skin and mucosal surfaces. Palmar rash, lymphadenopathy, condyloma latum. Mild fever, malaise, weight loss. Neurosyphilis (usually asymptomatic) (2-10 weeks after chancre)
  3. Neurosyphilis, aortitis, gummas (1/3 of untreated, usually 5+ years later)
  4. Untreated 25% intrauterine or perinatal death. Infantile rash, osteochondritis, periostitis, liver and lung fibrosis. Tardive interstitial keratitis, hutchinson teeth, eighth nerve deafness.
31
Q

What are the two serologic tests used for syphilis?

A
  • Nontreponemal tests (measure antibody to a cardolipin-cholesterol-lecithin antigen, quantitative, falls with treatment and in tertiary syphilis)
  • Treponemal antibody tests (measure antibody that specifically react with T. pallidum. Non quantitative)
    Confirmatory testing required as false positives occur.
32
Q

Lyme disease is an arthropod-borne illness caused by Borrelia spirochetes. Serology is the main method of diagnosis. Describe the clinical manifestations of the three stages of infection:

A
  • Early localised disease. Erythema migrans, fever, lymphadenopathy
  • Early disseminated disease. Secondary skin lesions, lymphadenopathy, migratory joint and muscle pain, cardiac arrhythmias and meningitis
  • Late disseminated disease. Chronic arthritis sometimes with severe damage. Less often neuropathy and encephalitis
33
Q

Which Clostridium species:
1. Causes cellulitis and myonecrosis of traumatic and surgical wounds (gas gangrene), mild food poisoning, and infection of the small bowel associated with neutropenia that often leads to severe sepsis?
2. Causes tetanus through release of a powerful neurotoxin?
3. Releases a potent neurotoxin that blocks synaptic release of acetylcholine and causes flaccid paralysis of the respiratory and skeletal muscles?
4. Causes pseudomembranous colitis?

A
  1. C. perfringens and C. septicum
  2. C. tetani
  3. C. botulinum
  4. C. difficile
34
Q

How are fungal infections diagnosed?

A

Histologic examination, definitive identification of some species requires culture.

35
Q

What are the four major types of mycoses?

A
  • Superficial and cutaneous
  • Subcutaneous
  • Endemic (dimorphic only)
  • Opportunistic
36
Q

The two species of cryptococcus that are known to cause disease in humans are C. neoformans and C. gattii, both of which are encapsulated yeasts. Both species have similar pathological effects. Where are the major lesions found?

A

The CNS, involving the meninges, cortical grey matter and basal nuclei

37
Q

Aspergillus is a ubiquitous mold that causes what in 1. otherwise healthy people and 2. immunocompromised individuals?

A
  1. Allergic broncopulmonary aspergillosis
  2. Serious sinusitis, pneumonia, and invasive disease
38
Q

What are the clinical consequences of malaria when infected by Plasmodium falciparum as opposed to P. vivax, P. knowlesi, P. ovale and P. malariae?

A
  • P. falciparum: High levels of parasitemia that may lead to severe anaemia, cerebral symptoms, renal failure, pulmonary oedema and death
  • Others: Low levels of parasitemia, mild anemia, and, very rarely splenic rupture and nephrotic syndrome
39
Q

What is the cause of the paroxysmal fever, chills and rigors characteristic of malaria?

A

Merozoites being released into the blood (from hepatocytes or RBCs)

40
Q

What is the diagnostic test for malaria?

A

Examination of a Giemsa-stained peripheral blood smear (asexual stages able to be identified within RBCs).
Note PCR assays are more sensitive.

41
Q

Briefly outline the four different types of lesions produced by Leishmania species (which invade macrophages):
Note generally diagnosed via Giemsa stain

A
  • Cutaneous- Self limited papule surrounded by induration -> slowly expanding shallow ulcer 6-18 months
  • Diffuse cutaneous- rare, single skin nodule -> nodules over entire body
  • Mucocutaneous - Moist ulcerating or non ulcerating lesions in nasopharyngeal area. Can be highly destructive. Eventually scar. Can reactivate.
  • Visceral - Systemic inflammatory disease. Hepatosplenomegaly, lymphadenopathy, pancytopenia, fever and weight loss. Life threating secondary bacterial infections or haemorrhages from thrombocytopenia
42
Q

For toxoplasmosis humans are a dead end host (as cats don’t eat people). Diagnosis is usually through serologic testing with PCR. What are the manifestations of infection in
1. Immunocompetent host
2. Immunocompromised host
3. Congenital

A
  1. 10-20% may experience swollen lymph nodes and muscle aches with a benign self limited course of weeks to months, followed by a latent infection
  2. Reactivates with this - encephalitis, myocarditis and pneumonitis common manifestations
  3. Foetal death and abortion, hydrocephalus, microcephaly, cerebral calcifications, neurocognitive deficits and chorioretinitis
43
Q

Strongyloides stercoralis migrates to the human gut by penetrating skin, travelling in circulation to the lungs then ascending the trachea to be swallowed. It is then often asymptomatic in immunocompetent hosts, sometimes causing diarrhoea, bloating and occasionally malabsorption. Immunocompromised can have high worm burdens (hyperinfection) due to uncontrolled autoinfection. What can this result in?

A

Fatal disease (worms get everywhere), can also be complicated by sepsis caused by intestinal bacteria entering blood following damage by invading larvae

44
Q

Cysticerosis can develop when intermediate hosts ingest tapeworm eggs (rather than larvae). What is this?

A

When the hatched oncospheres penetrate into the gut wall and disseminate, then transition to a cysticerus that can encyst in many organs. Symptoms dependent on organs involved, neurocysticerosis most serious- convulsions, increased ICP etc.

45
Q

Hydatid disease is caused by the ingestion of eggs of Echinococcus spp. of tapeworm and formation of cysts in organs where parasite larvae are deposited. It is usually asymptomatic until the cysts get large. Where do they usually invade (and what symptoms can occur)

A

Liver (abdo pain or obstruction), lungs (pain, cough, haemoptysis) and bone.
Note risk of anaphylaxis/dissemination if try to surgically remove a cyst.

46
Q

Which metazoal nematode matures in the human intestine to then preferentially penetrate muscle cells, which they modify (and eventually die in, resulting in calcification), causing fever, myalgias, marked eosinophilia and periorbital oedema? Note they can sometimes lodge in the lungs, heart and brain causing dyspnea, cardiac failure and encephalitis

A

Trichinosis

47
Q

Schistosomiasis enters the human body by penetrating the skin from fresh water. Much of the pathogenesis is related to the inflammatory response, in particular to the eggs, which secrete proteases, often leading to granuloma formation.
How does acute schistosomiasis present and what are two important manifestations of chronic infection (depending of the species)?

A
  • Acute can be a severe febrile illness that peaks about 2 months after infection
  • Severe hepatic fibrosis. Inflammatory cystitis -> calcified bladder (also SCC) and fibrosis of ureteral walls leading to obstruction.
48
Q

What are four manifestations in the spectrum of disease caused by lymphatic filariasis (caused by a few closely related nematodes dependent on a symbiotic bacteria)

A
  • Asymptomatic microfilaremia
  • Recurrent lymphadenitis
  • Chronic lymphadenitis with swelling of the dependent limb or scrotum (elephantiasis)
  • Tropical pulmonary eosinophilia
49
Q

The diseases caused by C. trachomatis are associated with different serotypes of the bacteria. Urogenital infections (more commonly asymptomatic than N. gonorrhoeae infections in men) and inclusion conjunctivitis are caused by D to K. What is caused by serotypes L1, L2 and L3?

A

Lymphogranuloma venereum - a chronic ulcerative disease. (Rupture of swollen, tender lymph nodes). Can cause fibrosis and strictures of the anogenital tract

50
Q

C. trachomatis is an obligate intracellular gram negative pathogen. Once in an inclusion (inject TARP into cell to remodel actin at site of phagocytosis) the elementary body becomes a metabolically active reticulate body. How can infection with this be diagnosed in 1. urethritis and 2. lymphogranuloma venereum?

A
  1. Amplified nucleic acids tests on genital swabs or urine
  2. Demonstration of the organism in biopsy or smears. Chronic case’s antibodies to the appropriate chlamydial serotypes in the serum
51
Q

Match the following diagnostic techniques with the appropriate infectious agents they may identify.
Techniques:
- Gram stain
- Acid-fast stain (Ziehl Neelsen)
- Silver stains
- Periodic acid-Schiff
- Mucicarmine
- Giemsa
- Antibody stains
- Culture
- DNA probes

Infectious agents:
- All classes
- Most bacteria
- Fungi, amebae
- Fungi, Legionella spp.
- Campylobacter spp., Leishmania spp., malarial parasites
- Mycobacteria spp., Nocardia spp. (modified)
- Cryptococcus spp.

A
  • All classes - Antibody stains, Culture, DNA probes
  • Most bacteria - gram stain
  • Fungi, amebae - Periodic acid-Schiff
  • Fungi, Legionella spp. - Silver stains
  • Campylobacter spp., Leishmania spp., malarial parasites - Giemsa
  • Mycobacteria spp., Nocardia spp. (modified) - Acid-fast stain
  • Cryptococcus spp. - Mucicarmine
52
Q

Disseminated N. gonorrhoeae infection of adults and adolescents usually causes septic arthritis accompanied by a rash of hemorrhagic papules and pustules. What group of people are at increased risk of this occurring?

A

Those who lack the complement proteins that form the membrane attack complex (5b, 6, 7, 8 and 9)

53
Q

Neisseria spp. use antigenic variation as a strategy to escape the immune response. How do they infect the body in the first place?

A

Using the same structures they vary to avoid the immune system. Adhere to nonciliated epithelial cells initially by long pili binding to CD46 (all nucleated cells have), supported by OPA proteins which also promote entry of bacteria into the cells.

54
Q

What are two limitations of antibody detection methods for diagnosis of an infectious disease?

A
  • Antibodies may not distinguish between different strains from the same family (e.g. will identify orthopoxviruses but can not isolate monkeypox)
  • Antibodies may not yet be present as the patient has presented prior to production
55
Q
  1. What are the common clinical manifestations of the monkeypox virus?
  2. How is it diagnosed?
A
  1. Painful rash often starting on the face, can be mucosal (lesions dip in centre before crusting over), swollen lymph nodes, other viral sequelae (fever, muscle aches etc) lasting 2-4 weeks
  2. PCR
56
Q

HSV-2 more often causes genital herpes. In addition to causing this and cutaneous lesions what are two serious manifestations of HSV-1?

A
  • Corneal blindness through corneal stromal (direct) and corneal epithelial (inflammation) disease
  • Fatal sporadic encephalitis
57
Q

What is the acid-fast staining protozoa that typically causes diarrhoeal illness (usually rest in the brush border of GI epithelial cells) for 2-3 weeks following infection through ingestion of water or food contaminated with thick walled oocysts containing 4 sporozites?

A

Cryptosporidium species

58
Q

What mucosa residing protozoan flagellate which exists as trophozoites within the body, and can survive for months in cold water in cyst form, is diagnosed by the identification of the same in stool, can cause a spectrum of disease from asymptomatic carriage to severe diarrhoea and malabsorption?

A

Giardia species

59
Q

NAAT is the first line test for urethritis. NGU is more common than gonococcal urethritis. What are the two most common organisms implicated in younger patients with NGU presenting with a urethral discharge and/or dysuria?

A

Chlamydia and mycoplasma genitalium

60
Q

What is the most common non-viral sexually transmitted infection worldwide?

A

Trichimonas vagninalis (an extracellular protozoan parasite)

61
Q

What are the three types of sporotrichosis (rose gardener’s disease), caused by the fungus sporothrix? And how is is diagnosed?

A
  • Cutaneous (erythematous lump at site of scratch, sometimes lymphadenopathy)
  • Pulmonary (immune deficiency, COPD etc to be susceptible)
  • Disseminated (often joints or CNS, again, generally requires immunodeficiency)
  • Diagnosed by culture and histology of skin biopsy. Serum may be useful in severe disease
62
Q

Leptospires are long, thin, motile spirochetes found in urine of animal hosts which can survive for weeks to months in fresh water and wet soil in warm areas. Often increased infection in hurricanes and floods. Early symptoms include fever, headache, chills, muscle aches, N&V, diarrhoea, abdominal pain, cough, jaundice, conjunctival suffusion and sometimes rash. What can develop in untreated patients?

A

Kidney damage, meningitis, liver failure, respiratory distress and death

63
Q

What is the preferred investigation for H. Pylori?

A

Faecal antigen testing (no PPI two weeks prior)

64
Q

Shigella causes a diarrhoeal illness that generally involves blood or lasts more than three days. Diagnosis is confirmed by identification of shigella in stool. What are three rare complications of infection?

A

Reactive arthritis, sepsis, haemolytic-uremic syndrome (more commonly in children)

65
Q

What is the gram negative bacteria species found in warm, salty marine environments that usually causes a self limited watery diarrhoeal illness (note same family has cholera causing strains) lasting up to 3 days?

A

Vibrio species

66
Q

Salmonella causes an acute gastroenteritis with sudden onset diarrhoea (can be bloody) and fever. About 8% of cases are invasive, what are four forms this can take?

A
  • Bacteremia
  • Meningitis
  • Osteomyelitis
  • Septic arthritis