Infectious Diseases Flashcards

1
Q

What is the definition of infectious disease?

A

An illness due to a specific infectious agent and/or its toxic products that arises through transmission …from an infected
person, animal or reservoir to a susceptible host, either directly or indirectly through an intermediate plant or animal host, vector or inanimate environment.
- Last JM, Dictionary of Epidemiology (1988)

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2
Q

Describe the basic mechanisms of transmission of infectious agents?

A

Agent that is living and reproducing and is looking for another host to live in.

When goes directly from infected to susceptible = direct
When goes from infected to vector to susceptible host = indirect.

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3
Q

What are the general features of infectious diseases?

A

Features
* Diseases are caused by micro-organisms
* A case may also be a risk factor.
* Individuals may be immune. If they have not had the infection does not mean they won’t get it.
* A case may be a source without being recognized as a case. Agent can live happily in host and show no clinical signs at all.
* Preventive measures usually have a scientific basis. Usually based off evidence.
* There is sometimes a need for urgency

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4
Q

Define infectivity. How is this calculated?

A

Infectivity
* Ability to invade a host
(# infected / # exposed to agent) x 100

Tells you how well it is able to infect in a population.

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5
Q

Define pathogenicity. How is it calculated?

A

Pathogenicity
* Ability to induce disease
(# with clinical disease / # infected) x 100

You have to first be infected before you can cause disease. How many have clinical disease vs. infected?

Has to be in the host first then it has to be able to cause disease.

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6
Q

Define virulence. How is it calculated?

A

Virulence
* Ability to cause severe disease
(# severely ill / # with clinical disease) x 100

Severe illness out of all of those that have clinical signs. Bit of subjectivity to this.

Can also be defined as the ability to infect and cause pathogenicity.

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7
Q

What do you need for disease to spread?

A

Multiple populations (at least 2) You need multiple populations for an infection to spread.
1. Infectious agents
* Viruses, bacteria, parasites, fungi, prions
2. Vectors
* Typically biting arthropods (insects including: mosquitos, ticks, lice, fleas, mites, blood sucking flies/bugs (e.g. midges, and sandflies)
3. Hosts
* Domestic animals / humans
* Sympatric (exist in the same area, e.g. rodents)
* Wild

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8
Q

What is the epidemiological triad?

A
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9
Q

What do diseases result from?

A
  • Diseases result from interactions between the host, agent, and the
    environment
  • A vector may be involved in transmission
  • May include Intermediate hosts / Reservoirs (Carriers)
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10
Q

How is host susceptibility determined?

A

Host susceptibility to the agent is determined by a variety of factors (e.g.):
* Genetic background
* Immunological condition
* Stressed / well nourished / vaccinated, etc.

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11
Q

Pathogen life cycle is driven by?

A
  1. Driven by modes of transmission and maintenance of infection
    * Hosts, vectors, and agents
  2. Ecological conditions that favor survival and transmission of
    infectious agents
    * Interactions among host, vectors, and environment
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12
Q

japanese encephalitis visur
amplified by pigs and wild birds
lives happily in mosq as vector and doew not necessaarily cause a lot of disease and death but does cause infection once in host adn reproducing. If mosq bites a humn, horse, or cattle –> causes disease b/c in host it is not normally in and is interacting wiht host that causes severe disease.

triconella (parasite)
lives among domestic cyel (almost exc. pigs b/c we farm pigs intensely) and the pigs will die from this and mice/rats will eat decomposig tissues from dead pig -> infect rat/mouse –> incorporated into feed and cycles this way in domestic cyel. in sylvatic cyel –> in the north the nativa strain that lives (can overwinter/freeze so it can live up there) –> humans eat some infected animals }(diaphragm or tongue is affected) and then we get trichonella by accident.

A
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13
Q

What are the different modes of transmission of infectious agents?

A
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14
Q
A
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15
Q

Define vertical transmission.

A

Vertical
* Trans-placental transmission ONLY
* Direct contact through blood from mother to offspring through placenta. Some agents do not make it through bloodflow but sometimes it is through childbirth itself, milk/colostrum. Is this pure vertical? Debate with this. Bottom line: mother –> offspring.
* Born with the infectious agent

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16
Q

Define horizontal transmission.

A
  • Contact
    • Direct contact
      • Handshaking, bites, breeding, colostrum/milk
    • Indirect contact
      • Droplets from sneezing/coughing (within 1 meter)
      • Fomites (inanimate objects): sharing needles, dirty boots, palpation gloves, milking equipment, transport trucks, etc.
        E.g. common cold –> droplets from sneezing or coughing (1 m/3 feet)

needles –> drug users
dirty boots –> feces on boots that may have FMD and mycoplasma in pigs
Blood during rectal exam, use same gloves in another cow –> pass virus

milking equip: mastitis is passed this way.

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17
Q

Define vehicle in relation to horizontal transmission.

A

Vehicle = medium that helps transmit it.

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18
Q

What are the different types of “vehicles” in horizontal transmission?

A
  1. Airborne
    * Dust particles, strong winds
    * e.g. Influenza, PRRS, histoplasmosis
    if it can pass through the air, not just through the droplets then it is considered airborne.
    Ebola has curly shape it is able to take flight with wind.
  2. Waterborne
    * Water troughs, streams, swimming
    pools
    * e.g. Campylobacter, Cholera = drinking water, Giardia
  3. Foodborne
    * Contaminated food (“Food
    poisoning” from un-/under-cooked
    contaminated food) Typhoid Mary = diarrhea, did not wash hands, contaminated food –> fed to fever.
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19
Q

What are the different types of vectors in horizontal transmission?

A
  1. Mechanical
    * Present on OUTSIDE insect bodies
    * e.g. E.coli, salmonellosis, ‘Pink eye’
    (Moraxella bovis is the bacterium that causes infection of eyes in cattle; the bacterium does not live inside housefly but on the outside on their feet/mouth), etc.
  2. Biological
    * Lives inside a vector (insect) usually along guts or salivary glands. when insect bites they are excreted from salivary glands into blood supply.
    * e.g. Lyme dz, malaria, etc.
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20
Q

What is the chain of infection?

A

How does the agent travel to the host?

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21
Q

What is the difference between infection vs. disease?

A
  1. Infection (all of these must occur)
    * Invasion of agent into the host –>
    * Multiplication of agent –>
    * Reaction of host tissues to the agent +/- toxins produced; neutorphils, monocytes, eosinophils, etc. Reaction of host to agent = infection. Just seeing an agent present in tissue without reaction is NOT an infection.
  2. Disease
    * Disorder of the structure or function of the host
    * Associated with clinical signs

When there is so much of a host reaction that the structure or function of host is compromised AKA a clinical sign present in host for it to be called a disease. Agent is what is passed from person to person and CAUSES disease.

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22
Q

You submit a sample for PCR test and it comes back positive for agent X…
What do you know?

A

Takes sample and amplifies a bit of the DNA and or the RNA of the agent. Takes small piece and if + states that is present. We know that the agent is present in the individual. Do not know if animal is alive or dead? No If it is causing infection? No. We only know that a bit of DNA and/or RNA is present. Do not have a lot of agent to know if it is present or not.

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23
Q

Before agent begins to multiply properly = latent period aka it broke through phys barrier and is living inside host and starts to multiply. Then it has a local reaction. As starts to multipy toa certai threshold then it starts to spill out and becomes infectious aka there is enough of this agent to break out of host and start being trasmitted to new host = infectious period.
if continus living in this state then it becomes a carrier or reservoir. Does not have to show any clinical signs. Once it sttars to show clincial signs and starts causing damage to host and effects function and degradation = clinial sign. Incubation period is longer than ? Clinical disease = clinical signs. You can die or become resusceptible to it again. You can clear infection, go back to homeostasis, and then get it again or you can be immune. Immunity can last a few months, weeks, etc. and depends on health status.

To go from one host to another it must be in infectious period.

A
24
Q
A
25
Q

Define index case.

A

Index – first case identified

26
Q

Define primary case.

A

Primary – the case that brings the infection
into a naive/susceptible population

27
Q

Define secondary case.

A

Secondary – infected by a primary…
* Tertiary – infected by a secondary

28
Q

Define propagative spread.

A
29
Q

Maintenance of population-level infection
depends on ?

A

successful transmission to new host!
* Characteristic of infectious agent; survive and pass on to new host to be able to continue living.
* Susceptible host and population dynamics (size and density); if number of susceptible indiivuduals is low then porbability of infective host contact to susceptible host is low? You need a good strong population of suscptible populations for it to jump to.

30
Q

Susceptible population
* If the number of susceptible individuals is low, the probability of infective host to contact susceptible host is low
* Agents with short infective periods require rapid contact with susceptible hosts
* Reducing susceptible population is a common intervention strategy!

A
31
Q

Define herd immunity.

A

Herd Immunity
* Collective immunological status of a population
* High level of herd immunity = few susceptible individuals
* ↑ herd immunity by ↓ susceptible population
* e.g. Vaccinate
* ↓ herd immunity by ↑ susceptible population
* e.g. New crop of animals entering a farm
* Critical threshold to determine %
susceptible/immune in a population. Calculate this to stop infection.
* Disease-specific and related to the potential for transmission.

Do this to bring the effective Reproductive # back to 1 or less than 1.

32
Q

Define basic and effective reproductive number.

If > then 1?
If < then 1?

A

The basic reproductive number (R 0, called “R-naught”) is the mean number of secondary cases an infectious individual will cause, when introduced into a susceptible population. Way of characterizing how much a virus can spread in population.

If R naught is > 1 –> going to infect more than 1 person from original primary. Continue spreading.

If R naught is > 1 –> exponential growth phase

If R naught is < 1 –> disappear. If on avg. 1 person can’t even infect another person, eventually it will disappear from population and that agent wont survive in that ecosystem.

The effective reproductive number (R t ) describes secondary cases in the whole population (how many new cases arise)
* Disease progression = change over time…
With time the effective repro number will be less than 1 and snuff out.

COVID R naught was 2-7 AKA every 1 person infects 2-7 people. This number can cause pandemic. The higher the R naught them worse the agent is.

33
Q

An infection will disappear if …
will become endemic if…
will be come an epidemic if…

A

See below.

34
Q

Calculate the reproductive number. Wont need to do math on exam but understand concept. Is this infection effective?

A
35
Q

Calculate the reproductive number. Wont need to do math on exam but understand concept. Is this infection effective?

A

No because 0.25

36
Q

What is the relationship between Herd Immunity and R?

A

If R 0 is the mean number of secondary cases in a susceptible population, then
R is the mean number of secondary cases in a population where a proportion, p, are immune

37
Q

The higher the Ro value, the ___________ proportion of the population needs to be vaccinated.

A

higher

38
Q

What proportion of the population needs to be immune to prevent an epidemic?
* If R 0 is 2, then R < 1 if the proportion of immune, p, is ?

A

> 0.50

P = population vaccinated

The higher the Rnaught value, the higher the proportion of the population needs to be vaxxed.

39
Q

What proportion of the population needs to be immune to prevent an
epidemic?
* If R 0 is 4, then R < 1 if the proportion of immune, p, is?

A

> 0.75

40
Q

What proportion of the population needs to be immune to prevent an
epidemic?
* If R 0 is 6, then R < 1 if the proportion of immune, p, is?

A

> 0.83

41
Q

What proportion of the population needs to be immune to prevent an
epidemic?
* If R 0 is 8, then R < 1 if the proportion of immune, p, is ?

A

> 0.88

42
Q

What is the compartmental model?

A

Compartmental models
* e.g. S-I-R or S-E-I-R models
* Susceptible-Infectious-Recovered or Susceptible-Exposed-Infectious-Recovered
* Estimate rate of change between compartments (disease states)

Created on paper and then validated with real data.

this is more basic and classic.
you have different states that people transit from. You start off with a person being susceptible then once infected you are infectious and can start to spread then you are recovered or immune. This is an assumption of one of these models.

You can get more complicated with this model to mimic life in a more realistic way. Can add an exposure period, latent period. KEY = once you build it you validate it with real data to ensure that what you theorized on paper is happening in real life.

43
Q

What is the agent-based model?

A

Simulate ‘free agents’ (computer term, not biological term) with set parameters

In this case, agents in the computing world is defined as an individual person or entity. “Agents” can move and interact within the model, almost as if they are a real person.

Free moving parts. This is a more modern model. Require a lot of computational power. Sort of like AI.

44
Q

What are the goals of mathematical models for propagating epidemics?

A

Overall goals to better understand (+/- predict) disease spread in a
dynamic population

“All models are wrong, but some may be useful”
- George E.P. Box

45
Q

What type of model is pictured below? Explain its principles.

A

SIR model
Time period (x) is the incubation period.
Within every incubation period there is a turnover. During the time a person was infectious, they infect someone else and it takes x amount of time for the contagious person to recover and the infected person to develop clinical signs.

46
Q

Mitigation strategies

A

It depends on the agent, virus/disease you are talking about. There is no end-all-be-all solution.

47
Q

What are the three major types of mitigation strategies?

A
  1. Reduce number of infected/shedding animals
  2. If they are shedding –> Reduce transmission of agent
  3. Reduce number of susceptible animals. If no susceptible animals, the disease is over.

If you tackle these three things, you will snuff out the disease.

48
Q

How would you reduce the # of infected/shedding animals?

A
  • Treating infected animals
  • Or you can Cull infected animals
  • Screen/test before moving or breeding before you start moving them so they are not moved to a naive population.
49
Q

How would you reduce the transmission of the agent?

A

Think abut medium in which this agent is transmitted. Is it via the env., vectors?
* Cleaning environment
* Removing vectors/reservoir. Things to stop vectors from moving, e.g. mosquitos, mosquito mesh for malaria.
* Quarantine/isolate infected
* Avoid high-risk practices.

50
Q

How would you reduce the number of susceptible animals?

A
  • Vaccinate (immunologically competent to fight off this disease)
  • Isolate/Cull preemptively and even do a buffer area and kill off those animals as well (e..g FMD)
  • Don’t move/mix populations (mixing animals = increasing susceptibility pool);.
51
Q

What are some other mitigation strategies?

A
  • Do nothing
  • Quarantine
  • Slaughter
  • Pre-emptively slaughter
  • Vaccination
  • Therapeutic and prophylactic
    chemotherapy
  • Movement of hosts
  • Restriction of movement of hosts
  • Control vectors and fomites
  • Genetic improvement towards agent and would reduce susceptibility pool.
52
Q

Adequate contacts per period can be thought of as?

A

The R naught value.

53
Q

Peak number is?

A

The total number of cases at any given time.

54
Q

Mitigation strategies will reduce the?

A

R naught

55
Q

If the Rnaught is less than 1

A

snuffs out

56
Q

If the Rnaught stays at 1

A

lives within that one person

57
Q

If the Rnaught is greater than 1

A

spreads to others