Infectious Diseases Flashcards
Bacteria
what can they be categorised into
- aerobic
- anaerobic
- gram +ve
- gram -ve
- atypical bacteria
Bacteria
gram +ve bacteria cell wall
thick peptidoglycan cell wall that stains with crystal violet stain
Bacteria
gram -ve bacteria
don’t have this thick peptidoglycan cell wall and doesn’t stain with crystal violet stain
but will stain other stains
Bacteria
atypical bacteria definition
cannot be cultured in the normal way or detected using a gram stain
most often implicated in pneumonia
Bacteria
what is nucleic acid
essential component of bacterial DNA
Bacteria
what are ribosomes
where bacteria proteins are synthesised within the bacterial cell
Bacteria
what is folic acid essential for
synthesis and regulation of DNA within the bacteria
Bacteria
how does folic acid enter the bacteria cell
the chain starts with PABA, which is directly absorbed into the cell across the cell membrane
PABA is converted to DHFA which is converted to DHFA which is converted inside the cell to THFA then folic acid
Bacteria
what is involved in gram staining a bacteria
- add a crystal violet stain which binds to molecules in the thick peptidoglycan cell wall
- add a counterstain (safranin) which binds to the cell membrane in bacteria that don’t have a cell wall
Bacteria
what colour do gram +ve bacteria turn when gram stained
violet (from crystal violet stain)
Bacteria
what colour do gram -ve bacteria turn when gram stained
pink (from counterstain)
Bacteria
name 3 gram +ve cocci
- staphylococcus (clusters)
- streptococcus (chain)
- enterococcus (diplo)
Bacteria
name the 5 gram +ve rods
Ben Neo Likes My Cat
Bacillus Nocardia Listeria Mycobacteria Corneybacteria
Bacteria
name 4 gram +ve anaerobes
CLAP
Clostridium
Lactobacillus
Actinomyces
Propionibacterium
Bacteria
name common gram -ve organisms (7)
- Neisseria meningitis
- Neisseria gonorrhoea
- Haemophilia influenza
- E.coli
- Klebsiella
- Pseudomonas aeruginosa
- Moraxella catarrhalis
Bacteria
atypical bacteria that causes atypical pneumonia
Legions of Psittaci MCQs
Legionella pneumophila chlamydia Psittaci Mycoplasma pneumoniae Chlamydydophila pneumoniae Q fever (coxiella burneti)
Bacteria
what is MRSA
Methicillin-Resistant Staphylococcus Aureus
Staphylococcus aureus bacteria that have become resistant to beta-lactam abx such as penicillins, cephalosporins and carbapenems
Bacteria
which people should you think about MRSA in
- hospital admissions
- nursing home
healthcare settings where abx are commonly sued
Bacteria
what extra measures can be taken to try to eradicate MRSA and stop spread
pts admitted for surgery or trx are screened by taking nasal and groin swabs
Bacteria
what is involved in eradication of MRSA
chlorhexidine body washes and antibacterial nasal creams
Bacteria
abx trx options for MRSA
- doxycycline
- clindamycin
- vancomycin
- teicoplanin
- linezolid
Bacteria
what are ESBLs
Extended Spectrum Beta Lactamase bacteria that have developed resistance to beta-lactam abx
Bacteria
how are ESBLs resistant to beta-lactam abx
they produce beta lactamase enzymes that destroy the beta-lactam ring on the abx
Bacteria
ESBLs tend to be ____ or ____
e.coli or klebsiella
typically cause UTIs but can also cause other infections eg pneumonia
Bacteria
what are ESBLs sensitive to
carbapenems such as meropenem or imipenem
Antibiotics
define bacteriostatic
abx that stop the reproduction and growth of bacteria
Antibiotics
define bactericidal
abx that kill the bacteria directly
Antibiotics
abx that inhibit cell wall synthesis
with a beta-lactam ring :
- Penicillin
- Carbapenems e.g. meropenem
- Cephalosporins
without a beta-lactam ring:
- Vancomycin
- Teicoplanin
Antibiotics
abx that inhibit folic acid metabolism
- Sulfamethoxazole
- Trimethoprim
- Co-trimoxazole
Antibiotics
how does Sulfamethoxazole work
inhibits folic acid metabolism by blocking the conversion of PABA to DHFA
Antibiotics
how does Trimethoprim work
inhibits the folic acid metabolism by blocking the conversion of DHFA to THFA
Antibiotics
what is Co-trimoxazole a combination of
Sulfamethoxazole and Trimethoprim
Antibiotics
why is Metronidazole effective against anaerobes and not aerobes
the reduction of metronidazole into its active form only occurs in anaerobic cells
when partially reduced, metronidazole inhibits nucleic acid synthesis
Antibiotics
abx that inhibit protein synthesis by targeting the ribosome
- Macrolides: erythromycin, clarithromycin, azithromycin
- Clindamycin
- Tetracyclines: doxycycline
- Gentamicin
- Chloramphenicol
Antibiotics
stepwise process of escalating abx trx
- start with Amoxicillin which covers strep, listeria + enterococcus
- switch to Co-amoxiclav to additionally cover staph, haemophilus, e.coli
- switch to Tazocin to additionally cover pseudomonas
4, Switch to meropenem to additionally cover ESBLs
- Add Teicoplanin or Vancomycin to cover MRSA
6, Add Clarithromycin or Doxycycline to cover atypical bacteria
Sepsis
what is it
a condition where the body launches a large immune response to an infection that causes systemic inflammation and affects the functioning of the organs of the body
Sepsis
pathophysiology
Pathogen recognised by macrophages, lymphocytes and mast cells
they release cytokines, interleukins + TNF which alerts the immune system
Sepsis
what do cytokines do
Cytokines activate NO which causes vasodilation
Cytokines cause the endothelial lining of blood vessels to become more permeable. Fluid leaks out of blood into the extracellular space leading to oedema and reduction in intravascular volume
Sepsis
what does oedema around blood vessels lead to
creates space between blood and the tissues reducing the amount of O2 that reaches the tissues
Sepsis
what does activation of the coagulation system lead to
deposition of fibrin throughout the circulation further compromising organ and tissue perfusion
also leads to consumption of platelets and clotting factors as they are being used up to form clots within the circulatory system
this leads to DIC
Sepsis
what is DIC
disseminated intravascular coagulopathy:
- thrombocytopenia
- haemorrhages
- inability to form clots + stop bleeding
Sepsis
why does lactate increase
due to hypoperfusion of tissues that starves the tissue of O2 causing them to switch to anaerobic respiration
a waste product of anaerobic respiration is lactate
Sepsis
define septic shock
when arterial blood pressure drops and results in organ hypo-perfusion
leads to increased blood lactate as the organs begin anaerobic respiration
Sepsis
how can septic shock be measured/diagnosed
- systolic BP <90 despite fluid resus
- hyperlactatemia (lactate >4mmol/L)
Sepsis
trx
treat aggressively with IV fluids to improve BP and tissue perfusion
Sepsis
trx if IV fluid boluses don’t improve the BP and lactate level
escalate to HDU or ICU where they can use inotropes (noradrenalin) to help stimulate the CVS and improve BP and tissue perfusion
Sepsis
define severe sepsis
when sepsis is present and results in organ dysfunction
Sepsis
severe sepsis examples of organ dysfunction
- hypoxia
- oliguria
- AKI
- thrombocytopenia
- coagulation dysfunction
- hypotension
- hyperlactaemia (>2mmol/L)
Sepsis
RFs
any condition that impacts the immune system or makes the pt more frail/prone to infection:
- very young or old (<1 or >75)
- chronic conditions: COPD, DM
- chemo, immunosuppressants or steroids
- surgery or recent trauma or burns
- pregnancy or peripartum
- indwelling medical devices: catheters, central lines
Sepsis
what is used in the UK to pick up the signs of sepsis
the National Early Warning Score (NEWS)
Sepsis
what does NEWS check
- temp
- HR
- RR
- O2 sats
- BP
- consciousness level
Sepsis
signs on examination
- signs of potential sources: cellulitis, discharge from wound, cough, dysuria
- non-blanching rash: meningococcal septicaemia
- reduced urine output
- mottled skin
- cyanosis
- arrhythmias: eg new onset AF
Sepsis
what is often the first sign of sepsis
high RR (tachypnoea)
Sepsis
what may elderly pts present with
confusion or drowsiness or simply ‘off legs’
Sepsis
what may neutropenic or immunosuppressed pts present as
normal obs and temp despite being life threatening unwell
Sepsis
blood tests for pts with suspected sepsis
- FBC: WCC + neutrophils
- U&Es: kidney function, AKI
- LFTs: liver infection + source of infection
- CRP: inflammation
- Clotting: DIC
- Blood cultures: bacteraemia
- Blood gas: lactate, pH, glucose
Sepsis
what additional inx can be helpful in locating the source of infection
- urine dipstick and culture
- CXR
- CT if intra-abdo infection or abscess is suspected
- LP for meningitis or encephalitis
Sepsis
high risk pts need…
urgent attention + mnx
Sepsis
moderate risk pts ….
may be managed in the community where the dx is clear and it is safe to do so
Sepsis
mnx
sepsis 6 within 1hr
Sepsis
what is Sepsis Six
3 tests:
- blood lactate
- blood cultures
- urine output
3 trxs:
- O2 to maintain O2 sats 94-98% (or 88-92% in COPD)
- empirical broad spectrum abx
- IV fluids
Sepsis
what is neutropenic sepsis
sepsis in a pt with a low neutrophil count of < 1x10(9) /L
Sepsis
medications that may cause neutropenia
- anti-cancer chemo
- Clozapine (schizophrenia)
- Hydroxychloroquine (RA)
- Methotrexate (RA)
- Sulfasalazine (RA)
- Carbimazole (hyperthyroidism)
- Quinine (malaria)
- Infliximab (immunosuppression)
- Rituximab (immunosuppression)
Sepsis
when should you suspect neutropenic sepsis in pts taking immunosuppressants or medications that may cause neutropenia
treat any temperature above 38 as neutropenic sepsis until proven otherwise
Sepsis
why is there a high risk of death from sepsis in pts taking immunosuppressants or medications that may cause neutropenia
their immune system cannot adequately fight the infection
Sepsis
mnx of neutropenic sepsis
Each local hospital will have a neutropenic sepsis policy
immediate broad spectrum antibiotics: piperacillin with tazobactam (tazocin)
aspects of mnx are the same for sepsis but with more caution
Urinary Tract Infections
why are they more common in women
their urethra is much shorter making it easy for bacteria to get into the bladder
Urinary Tract Infections
what is the main source of bacteria
from faeces where the normal intestinal bacteria e.g. E.coli can travel to the urethral opening from the anus
Urinary Tract Infections
methods of spreading bacteria
- sexual activity
- incontinence
- hygiene
- urinary catheters
Urinary Tract Infections
presentation of a lower UTI (6)
- dysuria
- suprapubic pain or discomfort
- frequency
- urgency
- incontinence
- confusion in frail pts
Urinary Tract Infections
presentation of pyelonephritis
- fever
- loin, suprapubic or back pain. Uni or Bilateral
- haematuria
- renal angle tenderness
- looking + feeling generally unwell
- vomiting
- loss of appetite
Urinary Tract Infections
urine dipstick results
nitrites: +
leukocytes: +
Urinary Tract Infections
What to do if
nitrites: -
leukocytes: +
should not be treated as a UTI unless there is clinical evidence
nitrites are a better indication of infection
Urinary Tract Infections
why would nitrites be +ve on a urine dipstick
gram -ve bacteria (E.coli) break down nitrates into nitrites
nitrates are a normal waste product in urine
Urinary Tract Infections
if nitrites and leukocytes are present then what?
send midstream urine to microbiology lab to be cultured and to have sensitivity testing
Urinary Tract Infections
most common organism
E.coli
gram -ve, anaerobic, rod shaped bacteria
Urinary Tract Infections
other causes apart from E.coli
- Klebsiella pneumoniae (gram-negative anaerobic rod)
- Enterococcus
- Pseudomonas aeruginosa
- Staphylococcus saprophyticus
- Candida albicans (fungal)
Urinary Tract Infections
abx choice in the community
- Trimethoprim
- Nitrofurantoin
alternatives:
- Pivmecillinam
- Amoxicillin
- Cefalexin
Urinary Tract Infections
duration of abx for a simple lower UTI in women
3d
Urinary Tract Infections
duration of abx for women that are immunosuppressed, have abnormal anatomy or impaired kidney function
5-10d
Urinary Tract Infections
duration of abx for men, pregnant women or catheter related UTIs
7d
Urinary Tract Infections
what do UTIs in pregnancy increase the risk of?
- pyelonephritis
- PROM
- pre-term labour
Urinary Tract Infections
mnx in pregnancy
1st line: nitrofurantoin
2nd line: cefalexin or amoxicillin
for 7d
Urinary Tract Infections
why is nitrofurantoin avoided in the 3rd trimester
it is linked with haemolytic anaemia in the newborn
Urinary Tract Infections
why is trimethoprim avoided in the 1st trimester
anti-folate effects
Urinary Tract Infections
mnx of pyelonephritis
- refer to hospital if there are features of sepsis
1st line abx for 7-10d:
- cefalexin
- co-amoxiclav
- trimethoprim
- ciprofloxacin
Cellulitis
what is it
an infection of the skin and the soft tissues underneath
Cellulitis
presentation
- bullae
- golden yellow crust
- erythema
- warm to touch
- tense
- thickened
- oedematous
Cellulitis
what are bullae
fluid-filled blisters
Cellulitis
what may a golden-yellow crust indicate
staphylococcus aureus infection
Cellulitis
most common causes
- Staphylococcus aureus
- Group A Streptococcus
- Group B Streptococcus
- MRSA (less common)
Cellulitis
name a Group A strep
streptococcus pyogenes
Cellulitis
name a group B strep
Streptococcus dysgalactiae
Cellulitis
what is the classification system NICE recommend for the assessment of the severity of cellulitis
Eron Classification (Class 1-4)
Cellulitis
Eron Classification: Class 1
no systemic toxicity or comorbidity
Cellulitis
Eron Classification: Class 2
systemic toxicity or comorbidity
Cellulitis
Eron Classification: Class 3
significant systemic toxicity or significant comorbidity
Cellulitis
Eron Classification: Class 4
sepsis or life-threatening
Cellulitis
when should you admit for IV abx
if they are class 3 or 4
consider if frail, very young or immunocompromised
Cellulitis
trx
Flucloxacillin is very effective against staph
PO or IV
alternatively: clarithromycin, clindamycin, co-amoxiclav
Malaria
what is it caused by
members of the Plasmodium family of protozoan parasites
Malaria
what are protozoa
single celled organisms
Malaria
what is the most severe and dangerous member of the Plasmodium family of protozoan parasites
Plasmodium falciparum (75% of cases in UK)
Malaria
how is it spread
through bites from the female Anopheles mosquitoes that carry the disease
infected blood sucked up by feeding mosquito
malaria in the blood reproduces in the gut of the mosquito producing thousands of sporozoites (malaria spores)
mosquito bites another human and sporozoites are injected by the mosquito.
Malaria
4 types
- Plasmodium falciparum
- Plasmodium vivax
- Plasmodium ovale
- Plasmodium malariae
Malaria
where do the sporozoites travel to in the newly infected person
the liver
Malaria
what can P.vivax and P.ovale do in the liver
lie dormant as hypnozoites for several years
Malaria
how sporozoites cause haemolytic anaemia
merozoites mature in the liver into merozoites which enter the blood and infect RBCs
In RBCs, the merozoites reproduce over 48hrs then the RBCs rupture, releasing loads more merozoites into the blood, causing haemolytic anaemia
Malaria
why do infected people have high fever spikes every 48 hrs
in RBCs the merozoites reproduce over 48hrs, after which the red blood cells rupture releasing loads more merozoites into the blood and causing a haemolytic anaemia
Malaria
incubation period
1w after infection with malaria although it can lie dormant for years
Malaria
whom should you suspect malaria in
someone who lives or has travelled to an area of malaria
Malaria
non specific sx (5)
- fever, sweats, rigors
- malaise
- myalgia
- headache
- vomiting
Malaria
signs (3)
- pallor due to the anaemia
- hepatosplenomegaly
- jaundice
Malaria
why do pts get jaundice
because bilirubin is released during the rupture of RBCs
Malaria
dx
malaria blood film (sent in an EDTA bottle) (the red top bottle for FBC)
Malaria
how to exclude malaria
3 samples of blood film are sent over 3 consecutive days
Malaria
why are 3 samples sent over 3 consecutive days
due to the 48 hour cycle of malaria being released into the blood from RBCs
the sample may be -ve on days where the parasite is not released
but +ve later when they are released from the RBCs
Malaria
for advice and mnx, whom should you discuss pts with
the local infectious diseases unit