Infection Flashcards
Examples of DNA enveloped viruses
Hepatitis B-inflamed liver, Herpes, Smallpox-vesicular rash
Examples of DNA non-enveloped viruses
HPV- warts and cervical cancer
Examples of RNA enveloped viruses
Rubella- rash, congenital rubella syndrome, most common cause of PDA= maternal rubella in 1st trimester of pregnancy, HIV (AIDS), rotavirus- most common cause of gastroenteritis in children, diarrohea, Coronaviruses(colds, SARS), Ortho and Paramyxo-viruses(Influenza, Measles, Mumps.)
Examples of RNA non-enveloped viruses
Picornaviruses(Polio-inflammation of SC), Hepatitis A- liver disease, Rhinoviruses- colds.
What is the group name for the antimicrobials penicillin, amoxicillin, flucoxacillin and cephalexin and what do they target?
Beta-lactams, cell wall
What is the group name for vancomycin and what does it target?
Glycopeptide, cell wall
What is the group name for gentamicin and what does it target?
Aminoglycoside, protein synthesis
What is the group name for erythromycin and what does it target?
Macrolide,protein synthesis
What is the group name for tetracycline and what does it target?
Polyketide, protein synthesis
What is the group name for ciprofloxacin and what does it target?
Chemotherapeutic, DNA
What does rifampicin target and why is it specific as an antimicrobial?
RNA polymerase, enzyme sufficiently different in bacteria than in humans
What do trimethoprim and metronidazole target?
Folate metabolism
Disease assoc with staphylococcus aureus?
Abscesses, TSS, food poisoning. Most common cause of septic arthritis. May cause endocarditis if enters bloodstream.
Disease assoc with streptococcus pyogenes?
Necrotising fasciitis, strep throat, scarlet fever, impetigo
Disease assoc with Group B steptococci?
Neonatal sepsis and meningitis.
Disease assoc with Streptococcus pneumoniae?
Pneumonia
Disease assoc with Clostridium perfringens?
Gas gangrene, food poisoning
Disease assoc with Clostridium difficile?
Antibiotic assoc diarrohea (can lead to pseudomembranous colitis), fever, intestinal diseases.
Disease assoc with Neisseria meningitidis
Meningitis and septicaemia. Mening ococcemia.
Disease assoc with Neisseria gonorrhoeae?
Gonorrhoea, which can lead to pelvic inflammatory disease in women and epididymitis in men.
Disease assoc with Escherichia coli?
Watery diarrhoea, acute renal failure, UTI, food poisoning
Disease assoc with Salmonella spp.?
Gastroenteritis- infection of stomach and bowel (infectious diarrohea), typhoid fever, septicaemeia
Disease assoc with Shigella?
Bloody diarrhoea, dysentery
Disease assoc with Pseudomonas aeruginosa?
Generalised inflammation, sepsis, necrotising enterocolitis, pneumonia if enters lungs of CF patient.
Disease assoc with Legionella spp.?
Legionnaire’s disease, pontiac fever
Disease assoc with Helicobacter pylori?
Peptic ulcers, espec. duodenal, stomach cancer, gastric ulcers, chronic gastritis.
Disease assoc with Bacteroides spp.?
Abscesses, lesions, diarrhoea
Disease assoc with Chlamydia spp.?
Chlamydia
Disease assoc with Mycobacterium tuberculosis?
TB
Disease assoc with Mycobacterium leprae?
Leprosy
What do we use instead of the gram reaction for mycobacteria?
Acid fast
Define pathogen
microorganisms capable of producing disease
Define non-pathogen
microorganisms which don’t cause disease and may perform essential ecological roles
Why do we use the Gram stain
to allow us to detect and begin to classify bacteria in order to predict their pathogenicity and likely response to treatment.
What is the difference in cell walls between gram +ve and gram -ve bacteria?
Gram +ve= thick peptidoglycan layer and a cell membrane.
Gram -ve= inner and outer membranes, and a thinner peptidoglycan layer.
Examples of eucaryotes and procarytoes.
Eucaryotes :fungi, protozoa Procaryotes: bacteria, archaea.
Compare eucaryotes, bacteria and viruses.
Eucaryotes: no cell wall, stable mRNA, 40S+60S=80S, introns present, many chromosomes, compartmentalised reactions, never flagellum/pilli/capsule, nucleus, membrane-bound organelles, no reverse transcriptase, DNA and RNA, no capsid or envelope.
Bacteria: peptidoglycan cell wall, labile mRNA, 30S+50S=70S, coupled transcription and translation, no introns, 1 chromosome, no nucleus, plasmids + circular DNA loops, no membrane bound organelles, may have flagellum/pilli/capsule, no reverse transcriptase, DNA and RNA, no capsid.
Viruses: can be enveloped, no organelles, proteins capsids, no pilli/flagella, can have reverse transcriptase e.g. HIV, DNA or RNA but NOT both.
Why are different individuals subject to different infections?
Due to:
- weakened immune systems
- no access to healthcare e.g. immunisations
- poor living conditions
- poor nutrition
- genetic predisposition
- lifestyle e.g. STDs
Describe the gram staining process
- +vly charged crystal violet binds to -vly charged cell components
- iodine forms large molecular complexes with crystal violet
- acetone/methanol used to extract complexes through gram -ve cell wall, not gram +ve.
- red dye used to stain now unstained gram -ve cells.
Gram -ve=stained red
Gram +ve=stained blue
How does penicillin target bacteria?
It targets the cell wall, inhibiting the transpeptidase enzyme which is responsible for forming peptidoglycan cross-links in the cell wall.
How does tetracycline target bacteria?
It binds reversibly to the 30S subunit on the ribosome, preventing binding of amino acyl-tRNAs to A site. Translation prevented as tRNA can’t bind, so mRNA cannot be used as template for protein synthesis.
Why does Rifampicin only target bacterial RNA polymerase?
Enzyme sufficiently different in bacteria to mammalian cells.
Why do bacteria become resistant to penicillin?
Overuse. Mutations in active site of transpeptidase enzyme, so many variants, which need use of newer antibiotics. Primary resistance by random mutation. Staph bacteria developed ability to cut beta-lactam ring of penicillin by producing beta-lactamase enzyme.
Describe mechanisms of resistance to the antifolate Pemetrexed.
- Mutation of reduced folate carrier, so decreased accumulation of drug.
- Decreased activity of folypolyglutamate synthase- decreased polyglutamation required for inhibiting enzymes in folate metabolism-required for cell division.
- Increased activity of glutamylhydrolase-cleaves polyglutamate derivatives which the drug forms.
- Increased activity of thymidylate synthase-Pemetrexed overwhelmed.
Describe resistance to rifampicin.
Mutations in gene encoding RNA polymerase.
Describe resistance to Tetracycline.
Increased efflux of drug, ribosomal protection and enzymatic inactivation of drug.
Give 2 bacterial causes of meningitis.
Neisseria meningitidis, Group B steptococci
Name common causes of hospital acquired infections
Staphylococcus aureus, pseudomonas aeruginosa
Classify streptococcus viridans
Gram +ve coccus
What infections does streptococcus viridans cause?
Dental caries (tooth decay), can cause endocarditis if patient has valve problems.
Classify proteus mirabilis and state infections it may cause
Gram -ve rod
Septicaemia, pneumonia, UTIs
Classify haemophilus influenzae and state infections it can cause.
Gram -ve rod
Bacterial meningitis, espec. in infants, otitis media, pneumonia.
Classify candida albicans and state infections assoc.
Yeast
Candidiasis (thrush- oral and vaginal)
Which bacterial organism is most common the skin?
Staphylococcus epidermidis
Describe mechanism of adenovirus infection
RME to enter cell, leaves cell via slow disintergration of dying cell, causes epithelial cell damage.
Where in the body is the adenovirus found?
Respiratory and intestinal tracts
Name some diseases the adenovirus is associated with
Gastroenteritis, conjuntivitis, RTIs
How is the adenovirus transmitted?
Inhalation- droplets and aerosols, and faecal-oral contamination.
Describe adenovirus composition
DNA virus, non-enveloped
Which immune cell is most important in controlling viral infections?
Lymphocytes
Which immune cell is most important in controlling bacterial infections?
Neutrophil
Name the 2 classes of fungi and state what the classes are based on.
Give an example of a fungus.
Yeast and mould
Unicellular or multicellular
Candida albicans- yeast, can cause oral and vaginal thrush.
Describe the features of systemic inflammatory response syndrome.
a response to a non-specific insult e.g. infection, trauma, ischaemia. 2 or more of: -temp >38C or 20/min (or PACO2 90/min -WBC < 4x10^9, or >12x10^9 /L. -HR >90/min
Describe differences between bacteraemia, sepsis and septicaemia.
Bacteraemia- presence of bacteria in blood, with or without clinical features, can’t be said simply by looking at a patient.
Sepsis- systemic response to infection, includes systemic inflammatory response syndrome and documented or presumed infection.
Septicaemia- clinical term for generalised sepsis, blood poisioning.
What is severe sepsis?
SIRS and organ dysfunction or organ hypoperfusion. so hypotension, decreased urine output as poor perfusion to kidney, resulting in failure.
What is septic shock?
severe sepsis and persistently low BP despite administration of IV fluids.
How do bacteria cause septic shock?
Endotoxins e.g. lipopolysaccharide-N.meningitidis, released, cause profound vasodilation, chemical and cytokine release? e.g. histamine and prostaglandins, so dramatic decease in TPR, fall in arterial pressure, so reduced perfusion to vital organs. Capillaries also become leaky with time, so reduced blood vol., decreasing arterial BP.
Decreased arterial pressure detected by baroreceptors-aortic arch and carotid sinus, stimualte increased sympathetic output, so HR and SV increased, so tachcardia and strong pulse. Vasoconstrictor effect via SNS overidden by toxins causing vasodilation but in later stages, vasoconstriction occurs via SNS, resulting in less blood flow to extremities, so pale and cold. Initially warm and red as vasodilation.
Cytokines can increase vascular permeability- IL-1 and TNF causes cytoskeletal reorganisation.
What antibiotic treatment is the empiric choice for meningitis caused by N.meningitidis?
Ceftriaxone- good against agent and can pass through inflamed blood-brain barrier into CSF.
What examples are they for multi-resistant infections?
TB, gonorrhoea
What enzyme do some bacteria produce e.g. staph aureus, to stop penicillin from functioning?
Beta-lactamase
What shape is neisseria meningitidis?
diplococcus- kidney-shaped
Why should most URT infections not be treated with antibiotics?
Most caused by viruses so antibiotics would have no benefit, but would kill certain bacteria of our normal flora which may alter the balance of bacteria in the body, may result in genital thrush if lactobacilli affected, and diarrhoea if the numbers of clostridium difficile bacteria increased in the large bowel.
What can we do to manage antibiotic resistance without stopping using them altogether?
- selective with administering antibiotics
- combination therapy
Why would a patient with HIV, who is suffering a bacterial infection in hospital, need to be given antibiotics immediately without doing tests e.g. blood culture?
They are immunocompromised so the bacterium could very quickly result in septicaemia and death.
Lack CD4+T cells necessary to recognise bacterial peptides presented by MHC II molecules on antigen-presenting cells, and stimulate maturation of B cells into plasma cells to produce Igs, so adaptive immune response deficient.
What is New Delhi Metallo-beta-lactamase 1 and name a bacterium which produces it?
an enzyme that makes bacteria resistant to a broad range of beta-lactam antibiotics e.g. penicillin, amoxicillin, flucoxacillin. These include the antibiotics of the carbapenem family, which are a mainstay for the treatment of antibiotic-resistant bacterial infections. E-coli and klebsiella pneumoniae. Bacteria produce the enzyme which is part of a class of enzymes= carbapenemases - making carbepenem antibiotics ineffective (as well as virtually all other antibiotics). If NDM-1 gene carried, bacterium resistant to nearly all antibiotics.
Give general examples of how bacteria can become resistant to antibiotics.
- increased synthesis of target enzyme
- increased efflux of drug
- reduced influx of drug
- prod. of different drug target which have lower affinity for drug
- alterations to target of drug
Give examples of bacteria responsible for producing pneumonia.
Streptococcus pneumoniae
Neisseria meningitidis
Pseudomonas areuginosa
Proteus mirabilis
Describe C difficile
Gram +ve rod shaped bacterium
Spore-forming
Obligate anaerobe
Produces toxins- A and B
Describe pathogenecity of C.difficile
Toxins:
A- enterotoxin- increases fluid secretion and causes inflammation of lining of bowel wall. Gives pseudomembranous appearance
B- cytotoxin- disrupts protein synthesis within cells.
What antibiotics are given for C.difficle?
If no markers for severe disease, start metronidazole for 10 days. If markers present e.g. high wcc, low albumin, increases creatinince, clinical markers of sepsis or temp >38.3 degrees C, than start vancomycin, with or without metronidazole.
What global problems does antibiotic resistance create?
- Increased mortality
- People being ill for loner
- Increased healthcare costs
- Damaged trade
- Jeopardises other HC gains
- Possibility of returning to a pre-antibiotic era.
Name 2 bacterial organisms which commonly cause infection when the host’s normal flora is disrupted.
Clostridium difficile
Candida albicans
When might you want to use broad-spectrum antibiotics?
In an emergency situation where a patient has a life-threatening condition e.g. sepsis, and there isn’t sufficient time to work out the causative microbe before administering the antibiotic, so you need an antibiotic which will target a large range of bacteria.
What are the negatives of using broad-spectrum antibiotics?
They can result in antibiotic resistance, and target normal bacterial flora which can predispose the patient to infection as their innate immune system is compromised.
When might antimicrobials be used in prophylactic treatment?
When a patient who is immunocompromised is undergoing some type of hospital treatment, e.g. if they have diabetes, HIV, splenectomy, BM malignancy.
What does norovirus cause?
Gastroenteritis, projectile vomiting
Why would gram staining a stools culture be unuseful when trying to determine the bacterial cause of diarrhoea?
There would be many bacteria in the stools which would normally be there even if an infection wasn’t present, and so the gram stain will pick up on all of these bacteria.
Describe shape of H.pylori
Motile gram -ve spiral bacillus (rod)
What is a patient with infection by E coli 0157:H7 at risk of if given antibiotics- potentiate toxin production?
Haemolytic uremic syndrome- acute renal failure, haemolytic anaemia and thrombocytopenia.
Describe treatment of malaria.
plasmodium falciparum (malignant) - quinine, artemisinin or doxycycline. P.ovale, vivax or malariae (benign)- chloroquine, followed by 2 wk course of primaquine- for exo-erythrocytic stage.
Usual treatment for Enteric fever?
Ceftriaxone or azithromycin 7-14 days
How does Legionella pneumophila use innate IS to aid its replication?
Phagocytosed by macrophages but prevents resulting phagosome from fusing with a lysosome, so bacterium evades destruction by macrophage, can replicate with protected environment and then when cell ruptures, a new crop of bacteria is released.
Name opportunistic infections associated with HIV when CD4 cell count above 200 cells per microlitre.
Herpes zoster
TB
Oral candidiasis (thrush)
Name opportunistic infections assoc. with AIDS.
Eosophageal candidiasis
Mucocutaneous herpes
Pneumocystis caricii pneumonia
Cryptosporidiosis
Why do patients infected with HIV develop drug resistance quickly?
HIV is an RNA virus, which lacks efficient mechanisms for genetic proof-reading, so mutations arise rapidly.
Prevention measures for HIV
Absolute: -no Sex
-condoms
-knowing who you’ve had sex with and who they have had sex with.
-no IVDU
-clean needles
-screened negative blood products
-health education and free needle-exchange programmes for IV drug users.
Reducing risk:- mother to child transmission- mother antiretrovirals, caesarrean section
-circumcision
-pre exposure- drugs to a partner to stop HIV infection
-post exposure- antiretroviral prophylaxis should be given for infected needle-stick injuries.
-vaccination
Describe the stages of viral replication
- adsorption- specific interaction, enveloped viruses have glycoproteins for attachment, may be unique folding of capsid protein forming attachment site
- penetration-RME or membrane fusion-e.g. HIV
- uncoating- so viral genes can be expressed for transcription
- transcription
- virion synthesis
- assembly
- release
How does HIV infect cells?
RNA retrovirus which gains entry to helper CD4+ T cells by binding to CD4 molecules- specific glycoproteins on surface. Genetic info. injected into cell cytoplasm, RNA converted to DNA via reverse transcriptase, and transcribe DNA then incorporated into host DNA. T cell them makes copies of virus, which are extruded from cell through exocytosis. IS responds by generating CD8+ cytotoxic T cells which kill infected HIV helper CD4+T cells, reducing no. of T helper cells, so infected individuals eventually become unable to generate an IR.***
Cytopathic effect of virus- production of viral particles within cell kills infected T cells.
Many opportunistic infections caused by viruses e.g. CMV. With AIDS, patients have defective CD8+ T cell responses despite these cells not being infected, as CD4+ helper T cells are required for full CD8+ cytotoxic T cell responses against many viral antigens.
How can risk of infection from central venous line be reduced?
Silver coating the central venous line
What is the difference between colonisation of a patient with normal flora and the carrier state?
Colonisation- normal flora present in body of a patient, potentially harmful as could become pathogenic, but not a pathogen currently.
Carrier state- patient carries a true pathogen which can be passed to others where it results in disease, but the patient carrying the pathogen is asymptomatic.
How do we get surface infections?
Invasion
Innoculation
Haematogenous
Migration
Prosthetic may also result from contamination
Organisms causing native valve endocarditis and prosthetic valve endocarditis >1 yr post-op
viridans Streptococci
Staph. aureus
candida
Organisms causing prosthetic valve endocarditis <1yr post-op
Coagulase -ve staphylococci- introd. from skin of patient or operator
Organisms causing prosthetic joint infections
coagulase -ve staphylococci
staph.aureus
Type of giant cell (macrophage) present when prosthetic joint infection
Foreign body cells
Cardiac pacing wire endocarditis organisms?
coagulase -ve staphylococci
staph.aureus
Why might an outbreak of infection occur with pathogen changes?
New antigens, so people no longer immune e.g. influenza-H and N antigens
New virulence factors causing disease e.g. C difficile toxins
Antibacterial resistance, so people remain infectious to others for longer as disease takes longer to find a cure e.g.MRSA
Why might infections e.g. from N.Meningitidis, come about after the age of 3 mnths?
Before this time, the baby has passive immunity via maternal Igs, but after 3 mnths, these disappear.
How can we reduce/ eradicate pathogens to prevent infection transmission?
Antibacterials-disinfectants
Decontamination
Sterilisation
How can patients be stopped from acquiring infections?
Improved health- nutrition and medical treatment
Immunity- passive and active-vaccination
How can practice prevent infection transmission?
Avoid pathogen or vector- don’t visit place with pathigen, protection- long sleeves and trousers, equipment- gloves, aprons, masks, behavioural- safe sex, safe disposal of sharps, food and drink prep.- boiling water
How can place prevent infection transmission?
Environmental engineering- safe water, safe air- prevent prosthetic joint contamination, good quality housing, well designed h.care facilities.
Humoral components of innate IS?
- complement sytem- cascade of serum proteins- involved in recruitment, opsonisation
- cytokines- can act as chemoattractants for recruitment of other inflammatory cells, activate phagocytes, and initiate inflammatory process for protection.
What organisms classically cause impetigo?
Staphylococcus aureus
Group A streptococci e.g. streptococcus pyogenes
Give 3 examples of encapsulated bactera an asplenic patient is at increased susceptibility to
Haemophilus influenzae
Streptococcus pneumoniae
Neisseria meningitidis
Why is the spleen so important to immune function?
Protection against blood-borne pathogens, e.g. encapsulated bacteria- most invasive
Antibody production- IgM acute, IgG long term
Splenic macrophages- removal of opsonised microbes and removal of immune complexes- antibody-antigen complexes
What is an immunocompromised host?
State in which IS unable to respond appropriately and effectively to infectious microbes
How can we recognise infections suggesting underlying immune deficieny?
SPUR- severe, persistent. unusual, recurrent
Give examples of latent infections which may be reactivated in immunocompromised host when IS can no longer keep infection under check
Cytomegalovirus
Mycobacterium TB
Varicella-Zoster virus
Epstein-Barr virus
Cytomegalovirus family?
Herpes (betaherpesvirinae) (enveloped DNA virus)
Difference between primary and secondary immunodeficiencies
Primary- intrinsic defect
Can be single gene disorder, polygenic, or polymorphisms. Congenital, but may present later in life
Secondary- acquired
Underlying disease or condition affecting immune components so decrease production or increase loss or catabolism
Which cells does HIV mainly infect?
CD4+ T cells, causing progressive destruction of these T lymphocytes. HIV particle= lipid envelope derived from infected host cells but containing viral proteins.
What is CD4?
A glycoprotein expressed on surface of T cells and some macrophages, which binds to class II MHC molecules on antigen-presenting cells, resulting in T cell activation
Describe chronic granulomatous disease, and example of a primary immunodeficiency of the phagocyte type, and describe how patient may present
group of disorders resulting from failure to produce bactericidal oxygen radicals during the ‘respiratory burst’ which accompanies activation of phagocytes. Defects in NADPH oxidase enzyme complex which normally generates increased oxygen consumption (the ‘respiratory burst’), essential for the clearance of phagocytosed micro-organisms via O2 dependent killing mechanism. Classic type inherited as an X-linked recessive disorder. Typically presents in 1st 3 months of life as severe skin sepsis caused by staphylococcous aureus or fungal infections. Complications include regional lymphadenopathy- disease of lymph nodes, hepatosplenomegaly, hepatic abscesses, septicaemia and osteomyelitis (infection of bone). Affected organs show multiple abscesses and non-caseating giant-cell granulomas where cells have large vesicular nuclei, plentiful eosinophilic cytoplasm and are often rather elongated.
May also present with pulmonary aspergillosis- fungal pulmonary infection with ground-glass opacification on CXR.
Give an example of a complement component deficiency and describe it
Hereditary angioedema- lack of inhibitor of 1st component of complement (C1 inhibitor) resulting in episodes of angio-oedema which involves recurrent attacks of cutaneous, intestinal or laryngeal oedema in patient which can be fatal if airway occluded. The oedema is triggered by increased permeability of the blood vessels; probably bradykinin is the main mediator involved. Bradykinin is generated from plasma kinins by kallikrein or kallidin. (In angio-oedema, the swelling is subcutaneous or submucosal rather than epidermal, so urticaria is absent.) The affected organs are the skin and mucosa, including the upper airway and gastrointestinal (GI) tract. Prophylaxis involves reducing triggers to the attacks e.g. drugs, trauma and infections. Symptoms and signs of laryngeal oedema: Throat - sore, tight, itchy, lump, ‘something stuck’, or dysphagia
Management of aspleinc/splenectomised patient?
Penicillin prophylaxis life-long
Immunisation against encapsulated bacteria at least 2 wks prior to splenectomy
Patient info., medical alert bracelet
Classify norovirus
ss +ve strand (1 that can serve as mRNA in infected cell) RNA non-enveloped virus