ICS week 3 Flashcards
what are the types of PRRs?
- soluble
- cell associated
what do PRRs respond to?
pathogens and associated pathogen associated molecular patterns (PAMPs)
how do soluble PRRs respond to PAMPs?
- direct attack of microorganism by soluble PRR molecules
- enhancement of phagocytosis of PRR-bound PAMPs
- proteolytic cascade resulting in lysis of microorganism
how do cell associated PRRs respond to PAMPs?
- phagocytosis of PAMP and associated microorganism
- activation of immune cell encountering PAMP
- release of inflammatory mediators to amplify response
what are DAMPs? what are they released by?
- danger associated molecular patterns
- necrotic cells
- apoptotic cells typically don’t release DAMPs
what is the response to severe injury?
- production of DAMPs
- uncontrolled cell death (necrosis)
- release of DAMPs
- processing of DAMPs by soluble and cell-associated PRRs
- immune response
what is the response to physiological stimuli or mild injury?
- DAMPs produced
- regulated cell death (apoptosis)
- DAMPs remain hidden in the cell
- recognition and phagocytosis of apoptotic cell by macrophage
- immune system remains quiscent
how is recognition of nonself entities achieved by the immune system?
array of pattern recognition receptors and proteins that have evolved to detect components of infectious agents that are not usually present in the body
what are PAMPs?
- pathogen-associated molecular proteins
- components of infectious agents that are normally present in the body
- not normally in the body, but is a common feature of many frequently encountered pathogens
what are some examples of PAMPs?
- carbohydrates not normally exposed in vertebrates
- proteins only found in bacteria e.g. flagellin
- double-stranded RNA that is typical of RNA viruses
what soluble (humoral) pattern recognition molecules are bound to the infectious agents? what does this lead to?
- complement
- mannose-binding lectin
- C reactive protein
- lysozyme
leads to killing through destruction of microbial cell wall constituents and breaching of the plasma membrane due to protein actions
what does engagement of infectious agents with cell associated pattern recognition receptors lead to?
- can lead to phagocytosis followed by its destruction within phagocytic vesicles
- leads to activation of signal transduction pathways that culminate in the release of soluble messenger proteins (cytokines, chemokines etc) that mobilise components of the immune system
what do several PRRs bind to?
- several are lectin-like
- bind multivalently with considerable specificity to exposed microbial surface sugars with their characteristic rigid three-dimensional geometric configurations
what do PRRs often not bind to?
array of galactose or sialic acid groups that are commonly the penultimate/ultimate sugars on surface polysaccharides
other than sugars, what else can PRRs bind to?
- detect nucleic acids derived from bacterial and viral genomes by virtue of modifications not found within vertebrate nucleic acids or conformations not normally found in the cytoplasm
what are families of PRRs?
TLRs, CTLRs, NLRs, RLRs and scavenger receptors
how many PRRs could be expressed by a phagocyte at a given time?
in excess of 50 distinct PRRs
what are TLRs?
toll like receptors
how did TLRs get their name?
- similarity to the Toll receptor in the fruit fly (Drosophila)
what is the function of TLRs?
- triggers an intracellular cascade generating the expression of antimicrobial peptides in response to microbial infection
- series of cell surface TLRs acting as sensors for extracellular infections have been identified
what are cell surface TLRs activated by?
microbial elements e.g.:
- peptidoglycan
- lipoproteins
- mycobacterial
- lipoarabinomannan
- yeast zymosan
- flagellin
- other pathogen derived ligands
what are examples of TLRs that are not displayed on the cell surface? where are they located?
some are responsive to intracellular viral RNA and unmethylated bacterial DNA
- e.g. TLR3 and TLR 7/8/9
- are located in endosomes and become engaged when encountered with phagocytosed material
what does engagement of TLRs with their respective ligaments lead to?
drives activation of nuclear factor kB (NFkB) adn members of the interferon-regulated factor (IRF) family of transcription factors
- depends on specific TLR
where are TLRs located?
within the plasma membrane or endosomal membrane compartments
what does NFkB and IRF transcription factors do?
after being produced by TLRs, they direct the expression of numerous anti-microbial gene products, e.g. cytokines and chemokines, and proteins that alter the activation state of the cell
what is an example of combinatorial activation of TLRs?
- TLR2 can respond to a wide diversity of PAMPs and typically functions within heterodimeric TLR2/TLR1 or TLR2/TLR6 complexes
what is the structure of TLRs?
- all have the same basic structural features, with multiple N-terminal leucine-rich repeats (LRRs) arranged in a horseshoe/cresent shaped solenoid structure
- this acts as the PAMP-binding domain
what are LRRs? how are they arranged in TLRs?
N-terminal leucine-rich repeats
- arranged in horseshoe/crescent shaped solenoid structure
- acts as a PAMP-binding domain
what signalling events happen when PAMP binds to TLR?
- tranduce signals into the cell via C-terminal motifs called TIR domains which can recruit adaptor proteins within the cytoplasm with similar TIR motifs
what are CTLRs?
calcium-dependent (C-type) lectin receptors
- transmembrane proteins
what displays CTLRs? what is an example?
phagocytes display CTLRs
- macrophage mannose receptor is an example
what is the function/mechanism of CLTRs?
- multiple carbohydrate recognition domains whose engagement with their cognate microbial PAMPs generates an intracellular activation signal
what are NLRs?
nod-like receptors
- soluble proteins that reside in the cytoplasm where they act as receptors for PAMPs
what is the structure/function of NLRs?
- typically contain an N-terminal protein-protein interaction motif that enables them to recruit proteases or kinases upon activation
- central oligomerization domain and C-terminal LRRs
what does the central oligomerization domain and C-terminal LRRs in NLRs act as?
acts as the sensor for pathogen products
in what state do NLRs exist in? what function does this serve?
thought to exist in an autoinhibited state with their N-terminal domains folded back upon their C-terminal LRRs
- this conformation prevents the N-terminal region from interacting with its binding partners in the cytoplasm
what triggers the activation of NLRs?
- most likely triggered through direct binding of a PAMP to the C-terminal LRRs
- this disrupts the interaction between the N- and C-termini of the NLR
- permits oligomerization into a complex that can recruit an NFkB-activating kinase (e.g. RIP-2) or members of the caspase family that can proteolytically process and activate the IL-1beta precursor into a mature cytokine
what is the precursor to cytokines?
IL-1beta
what is the inflammasome?
- assembled in response to a number of PAMPs
- important for the production of IL-1beta and IL-18
- it is a multiprotein oligomer responsible for the activation of inflammatory responses
- promotes maturation and secretion of pro-inflammatory cytokines IL-1beta and IL-18
what are RLRs? what is their function?
- RIG-like helicase receptors
- recently discovered group of proteins that act as intracellular sensors for viral-derived products
where are RLRs found?
- found in the cytoplasm
what are RLRs activated by? what is their function?
- all appear to be activated in response to double-stranded RNA
- capable of directing the activation of NFkB and IRF3/4 that cooperatively induce antiviral type I interferons (IFNalpha and beta)
what are scavenger receptors?
- represent a further class of phagocytic receptors
what is the function of scavenger receptors?
recognize a variety of anionic polymers and acetylated low-density proteins
what is an example of a scavenger receptor?
CD14
what is the function of CD14?
has a role in the handling of Gram-negative lipopolysaccharide endotoxin (LPS)
- failure can lead to toxic shock
- biologically reactive lipid A moiety of LPS is recognised by a plasma LPS-binding protein
- the complex that is captured by the CD14 scavenger molecule on the phagocytic cell activates TLR4
what happens when encountering ligands of PRRs?
- end result is a switch in cell behaviour from a quiescent state to an activated one
what do activated macrophages and neutrophils do?
- phagocytose particles that engage their PRRs
- release a range of cytokines and chemokines that amplify the immune response further
what is the function of NFkB?
it is a transcription factor which controls the expression of numerous immunologically important molecules e.g. cytokines and chemokines
where is NFkB located? what is its inhibitor?
- sequestered in the cytoplasm by its inhibitor IkB
- IkB masks a nuclear localisation signal on NFkB
what happens to NFkB when a PAMP binds to its cognate PRR?
- it is liberated from IkB due to the actions of a kinase that phosphorylates IkB and promotes its destruction
- NFkB is now free to translocate to the nucleus, seek out its target genes and initiate transcription
how do TLRs promote NFkB-dependent transcription through activation of the IKK complex?
- PAMP binds to PRR
- adaptor proteins: TIR domain, MyD88, IRAK, TRAF6
- TAK1 protein
- activate the IKK complex
- the IKK complex phosphorylates the inhibitor of NFkB (IkB), which degrades it
- NFkB is liberated and can translocate into the nucleus and initiate transcription of multiple genes
what degrades IkB?
IKK complex
what PAMP does TLR1 bind to?
bacterial
- lipopeptides
- lipoproteins
what PAMP does TLR2 bind to?
bacterial
- lipopeptides
- lipoproteins
what PAMP does TLR4 bind to?
bacterial
- LPS
what PAMP does TLR5 bind to?
bacterial
- flagellin
what PAMP does TLR6 bind to?
bacterial
- lipopeptides
- lipoproteins
what PAMP does TLR10 bind to?
unknown
what PAMP does TLR11 bind to?
toxoplasma gondii
- profilin
what does binding of plasma membrane TLRs (1,2,4,5,6,10,11) lead to?
- activation of NFkB and IRF (interferon-related factor) transcription factors
- direct the expression of numerous anti-microbial gene products, e.g. cytokines and chemokines
what PAMP does TLR3 bind to?
viral
- dsRNA
what PAMPs do TLR7 and TLR8 bind to?
viral
- ssRNA
- nucleotide analogues
what PAMP does TLR9 bind to?
bacterial
- unmethylated CpG DNA
what TLRs are in the endosomal compartment?
TLR 3,7,8,9
what does binding of TLR3 lead to?
activation of IRF-3
what does binding of TLR7 and TLR8 lead to?
activation of IRF-7
what does binding of TLR9 lead to?
activation of NFkB and IRF-5
what does activation of NK cells do?
- secretion of cytokines, e.g. IFNgamma
- delivery of signals to their target cells via Fas ligand or cytotoxic granules which can kill the cell that provided the activation signal
what receptors do NK cells have?
activating and inhibitory receptors
what do activating NK cell receptors do?
trigger cytotoxic activity upon recognition of ligands that should not be present on the target cell
what do inhibitory NK cell receptors do?
restrain NK cell killing by recognising ligands that should be present
how are bacteria and fungi handled?
phagocytosis and killing
how are viruses handled?
cellular shut down, self sacrifice, cellular resistance
who proposed PRR concepts?
Charles Janeway 1943-2003
- self/non-self discrimination by recognition of unchanging patterns of microbes
what are types of patterns?
- limited characteristics
- Gram +ve/-ve
- dsRNA
- CpG motifs
what are antimicrobial peptides that are secreted? give examples
- secreted in lining fluids from epithelia and phagocytes
- defensins, cathelicidin
what are lectins and collectins?
carbohydrate-containing proteins that bind carbohydrates or lipids in microbe walls
- activate complement, improve phagocytosis
what are examples of lectins and collectins?
- mannose binding lectin
- surfactant proteins A and D
what are functions of collectins in innate immunity?
- mediate pathogen aggregation
- enhance phagocytosis of opsonization directly
- stimulate oxidative burst in phagocytes
- modulate cytokine secretion by sensing LPS through cell surface receptors
- scavenge LPS
- MBL permeabilizes membrane of microogranisms by complement activation, and SP-A and SP-D do it by unknown mechanisms
how do mannose binding lectin and surface protein A and D permeabilise membrane of microorganisms?
- MBL does it by complement activation
- SP-A and SP-D do it by unknown mechanisms
what are pentraxins?
proteins like CRP, which have some antimicrobial actions, can react with the C protein of pneumococci, activate complement and promote phagocytosis
what are types of bacteria that are attach to PPRs?
- lipoproteins/LTA
- flagellin
- CpGs
- LPS
what are types of viruses that attach to PPRs?
- dsRNA
- SsRNA
what intermediate proteins are there for lipoproteins/LTAs?
- MyD88
- Mal/TIRAP
what intermediate proteins are there for flagellins?
- MyD88
what intermediate proteins are there for CpGs?
- MyD88
what intermediate proteins are there for LPS?
- MYD88/MAL
- TRAM/TRIF
what intermediate proteins are there for dsRNA?
- TRIF
what intermediate proteins are there for SsRNA?
- MyD88
what does activation of MyD88/ Mal/TIRAP lead to?
- signalling cascade including IRAKs, TRAF6, TAB2, TAK1 and IKKs leads to activation of NFkB, MAPK cascades, PI-3 kinase
- leads to cell activation, anti-microbial responses and pro-inflammatory gene trasncription
what does activation of TRAM/TRIF lead to?
- later activation of NFkB from TRIF via activation of RIP
- activation of a cascade including IKK and TBK1 leads to induction of IRF3 and production of interferon beta -> induction of interferon-dependent gene transcription
what exogenous ligands do TLR1/2 bind to?
gram positive lipopeptides
what exogenous and endogenous ligands does TLR3 bind to?
exogenous: double stranded RNA
endogenous: mRNA
what exogenous and endogenous ligands does TLR4 bind to?
exogenous: LPS, pneumolysin, viral proteins
endogenous: heat shock proteins, HMGB1, hyaluronan, fibrinogen
what exogenous ligand does TLR5 bind to?
flagellin
what exogenous ligand does TLR2/6 bind to?
gram positive lipopeptides
what exogenous and endogenous ligand does TLR7 bind to?
exogenous: single stranded RNA
endogenous: RNA?
what exogenous ligand does TLR8 bind to?
single stranded RNA
what exogenous and endogenous ligands does TLR9 bind to?
exogenous: CpG DNA
endogenous: DNA, mitochondrial DNA? (context may matter)
what is the special case of TLR4?
- pg amounts of LPS can signal
- as little as 10 molecules/cell
- polymorphisms in TLR affect endotoxin responsiveness, associated with human plagues etc
what is the process of signalling with TLR4?
- LBP/Lipid A go past CD14
- ligand binding to TLR4/MD-2
- TLR4-oligomerization
- signaling
what does activation of the IKK complex produce?
NFkB, which produces TNF
what does activation of the TBK-1 complex produce?
IRF3, which produces IFN-beta
what does activation of the IRAK-1 complex produce?
IRF7, which produces IFN-alpha
what can IRF5 produce?
TNF
what are other membrane bound PRRs that may participate in pathogen recognition and in pathogen phagocytosis?
- mannose receptor on macrophages
- Dectin-1; widespread on phagocytes, helps recognise beta glucans in fungal walls
- scavenger receptors on macrophages
how do bacteria e.g. salmonella multiply?
burst out from the phagolysosome and multiply in the cytoplasm of macrophages
how many NLRs are there? what do they do?
- rapidly expanding family of another 22 human proteins that detect intracellular microbial pathogens
- detection of peptidoglycan, muramyl dipeptide etc
what are the best known NLRs?
NOD1, NOD2, NLRP3
what is NOD2? what is its function?
- widely expressed NLR
- recognises muramyl dipeptide (MDP), a breakdown product of peptidoglycan
- activates inflammatory signalling pathways
what is a non-functioning mutation of NOD2?
Crohn’s disease
what is a hyperfunctioning mutation of NOD2?
Blau syndrome (rare, chronic granulomatous inflammation of skin, eyes and joints)
what is MDP?
muramyl dipeptide, a breakdown product of peptidoglycan
what is Blau syndrome? what is it caused by?
- hyperfunctioning mutation of NOD2
- rare, chronic granulomatous inflammation of skin, eyes and joints