Antibiotics Flashcards
what is the bacterial resistome?
pool of genes that determines resistance
why did the bacterial resistome originally ecolve?
- to counteract naturally occurring bactericidal compounds encountered in their natural habitats
- changed to meet challenges posed by modern antibiotic drugs used in the clinic
what are the types of antibiotic resistance? what are the basic mechanisms by which resistance is spread?
- innate or acquired
- by transfer of resistant bacteria between people
- by transfer of resistance genes between bacteria (usually on plasmids)
- by transfer of resistance genes between genetic elements within bacteria, on transposons
what is the aim of antibiotic stewardship?
sensible clinical use of existing medicines and the design of new antibacterial drugs
what are some genetic determinants of antibiotic resistance?
- chromosomal determinants: mutations
- gene amplification
- extrachromosomal determinants: plasmids
- transfer of resistance genes between genetic elements within the bacterium
- transfer of resistance genes between bacteria
how can gene amplification lead to antibiotic resistance?
- gene duplication and amplification are important
- treatment with antibiotics can induce an increased number of copies for pre-existing resistance genes e.g. antibiotic destroying enzymes and efflux pumps
what are plasmids?
- extrachromosomal genetic elements that can replicate independently
- closed loops of DNA that may comprise a single gene or as many as 500 or more
- often multiple copies are present, and there may be more than one type of plasmid in each bacterial cell
what are R plasmids?
- plasmids that carry genes for resistance to antibiotics (r genes)
- much of drug resistance is plasmid determined
what are transposons? how do they work?
- some stretches of DNA are readily transferred (transposed) from one plasmid to another and also from plasmid to chromosome or vice versa
- integration of segments of DNA (transposons) into the acceptor DNA can occur independently of normal mechanism of homologous genetic recombination
- not able to replicate independently
- may carry some resistance genes and hitch hike on a plasmid to a new species of bacterium
- can integrate into the new host’s chromosome or into its indigenous plasmids
what is a gene cassette? what can happen to it?
- resistance gene attached to a small recognition site
- mobile element
- multiple cassettes can be packaged together in a multicassette array
what is a multicassette array? what can happen to it?
- multiple gene cassettes that are packaged together
- can be integrated into a larger mobile DNA unit called an integron
what is an integron? what does it do?
- large mobile DNA unit
- may be located on a transposon
- contains a gene for an enzyme, integrase (recombinase)
- integrase inserts gene cassette at unique sites on the integron
what does the transposon/integron/multiresistance cassette array allow?
- rapid and efficient transfer of MDR between genetic elements within and between bacteria
what are mechanisms involved in the transfer of resistance genes between bacteria?
- conjugation
- transduction
- transformation
how can conjugation contribute to antibiotic resistance?
- involves cell-to-cell contact where chromosomal/extrachromosomal DNA is transferred from one bacterium to another
- main mechanism for spread of resistance
- ability to conjugate is encoded in conjugative plasmids
what are conjugative plasmids? what do they do?
- have the ability to conjugate encoded in them
- contain transfer genes that, in coliform bacteria, code for production by the host bacterium of proteinaceous surface tubules (sex pili) which connect the two cells
- conjugative plasmid passes across from one bacterial cell to another
what are promiscuous plasmids?
- some can cross the species barrier, accepting one host as readily as another
how can non-conjugative plasmids pass between bacteria?
by hitchhiking with conjugative plasmids
what is transduction? how is it involved in antibiotic resistance?
- process by which plasmid DNA is enclosed in a bacterial virus (phage) and transferred to another bacterium of the same species
- ineffective means of transfer of genetic material
- important in the transmission of resistance genes between strains of staphylococci and streptococci
what is transformation? how does it relate to antibiotic resistance?
- some bacteria can, under natural conditions, undergo transformation by taking up DNA from the environment and incorporating it into the genome by normal homologous recombination
- probably not of clinical importance
what are biochemical mechanisms of resistance to antibiotics?
- production of an enzyme that inactivates the drug
- alteration of drug-sensitive or drug-binding site
- decreased drug accumulation in the bacterium
- alteration of enzyme pathways
what are examples of production of an enzyme inactivating an antibiotic drug?
- inactivation of beta-lactam antibiotics
- inactivation of chloramphenicol
- inactivation of aminoglycosides
how can beta-lactam antibiotics be inactivated?
- beta-lactamases cleave the beta-lactam ring of penicillins and cephalosporins
- cross resistance between two classes of antibiotic is not complete, as beta-lactamses have preferences for different drugs
what are the main organisms that produce beta-lactimase?
staphylococci
- transduction of plasmids
- enzyme is inducible and minute, sub-inhibitory conc. of antibiotics de-repress the gene and lead to 50-80 x increase in expression
Gram-negative organisms
- coded for by chromosomal or plasmid genes
- enzyme may remain attached to the cell wall, preventing access of drug to membrane-associated target sites
- transposons
what is the action of beta-lactamse?
- passes through the bacterial envelope
- inactivates antibiotic molecules in the surrounding medium
how was the problem of resistant staphylococci secreting beta-lactamase tackled?
developing semisynthetic penicillins (e.g. meticillin) and new beta-lactam antibiotics (monobactams and carbapenems) and cephalosporins (e.g. cephamandole) that are less susceptible to inactivation
what is MRSA?
meticillin-resistance Staphylococcus aureus
how is chloramphenicol inactivated? how does this lead to antibiotic resistance?
- inactivated by chloramphenicol acetyl-transferase
- enzyme produced by Gram-positive and negative organisms, the resistant gene being plasmid borne
- in Gram-negative bacteria, the enzyme is produced constitutively, resulting in levels of resistance 5 x higher than in Gram-positives, where the enzyme is inducible
how are aminoglycosides inactivated? how does this lead to antibiotic resistance?
- inactivated by phosphorylation, adenylation or acetylation, and enzymes are found in Gram-positive and negative organisms
- resistance genes are carried on plasmids, and some found on transposons
what are examples of alteration of drug-sensitive or drug-binding sites leading to antibiotic resistance?
- aminoglycoside binding site on the 30S subunit of the ribosome may be altered by chromosomal mutation
- plasmid-mediated alteration of the binding site protein on the 50S subunit of a ribosome underlies resistance to erythromycin
- decreased binding of fluoroquinolones due to point mutation in DNA gyrase A
- rifampicin resistance due to an altered DNA-dependent RNA polymerise determined by a chromosomal mutation
- strains of S. aureus resistant to antibiotics that aren’t inactivated by beta-lactamase because they express an additional beta-lactam-binding protein coded for by mutated chromosomal gene
what are examples of decreased drug accumulation in the bacterium leading to antibiotic resistance?
- plasmid-mediated resistance to tetracyclines in bacteria
- resistance genes in the plasmid code for inducible proteins in the bacterial membrane, which promote energy-dependent efflux of the tetracyclines, and resistance
- resistance of S. aureus to erythromycin and other macrolides, and to fluoroquinolones, is by energy dependent efflux
- plasmin-determined inhibition of porin synthesis can affect hydrophilic antibiotics that enter through proins
- altered permeability due to chromosomal mutations involving polysaccharide components of the outer membrane of Gram negative bacteria may confer resistance to ampicillin
- mutations affecting envelope components affect accumulation of aminoglycosides, beta-lactams, chloramphenicol, peptide antibiotics and tetracycline
what are examples of alteration of enzyme pathways leading to antibiotic resistance? how is trimethoprim and sulfonamide resistance caused?
- resistance to trimethoprim is due to plasmid-directed synthesis of a dihydrofolate reductase with low or zero affinity for trimethoprim; transferred by transduction, may be spread by transposons
- sulfonamide resistance is plasmid-mediated and is due to dihydropteroate synthetase with low affinity for sulfonamides with no change in affinity for PABA
what drugs does alteration of drug-binding sites affect?
- aminoglycosides
- erythromycin
- penicillin
what drug does reduction of drug uptake by the bacterium affect?
tetracyclines
how can S. aureus manifest resistance to antibiotics? what is the mechanism for each?
- to beta-lactams (production of beta-lactamase and additional beta-lactam-binding protein that renders them resistant to meticillin)
- to streptomycin (chromosomally determined alterations of target site)
- to aminoglycosides (altered target site and plasmid-determined inactivating enzymes)
- to chloramphenicol and macrolides (plasmid-determined enzymes)
- to trimethoprim (transposon-encoded drug-resistant dihydrofolate reductase)
- to sulfonamides (chromosomally determined increased production of PABA)
- to rifampicin (chromosomally and plasmid determined increases in drug efflux)
- to fusidic acid (chromosomally determined decreased affinity of target site or plasmid-encoded decreased permeability to drug)
- to quinolones (chromosomally determined reduced uptake)
how have enterococci developed resistance to vancomycin?
- substitution of D-Ala-D-Ala with D-Ala-D-lactate in the peptide chain attached to N-acetylglucosamine-N-acetylmuramic acid (G-M) during first steps of peptidoglycan synthesis
what pathogens have developed or are developing resistance to commonly used drugs?
- S. aureus
- enterococci
- Psudomonas aeruginosa
- Streptococcus pyogenes
- S. pneumoniae
- N. meningitidis
- N. gonorrhoeae
- Haemophilius influenzae
- H. ducreyi
- Mycobacterium, Campylobacter and Bacteroides species
- M. tuberculosis
what does the cell wall of Gram-negative organisms consist of from the plasma membrane outwards?
- periplasmic space; contains enzymes and other components
- peptidoglycan layer 2nm thick, linked to outwardly projecting lipoprotein molecules
- outer membrane consisting of a lipid bilayer, containing protein molecules and lipoproteins linked to the peptidoglycan, and porins
- complex polysaccharides on outer surface; differ between strains of bacteria and are main determinants of their antigenicity; source of endotoxins, which, when shed in vivo, triggers aspects of the inflammatory reaction by activating complement and cytokines
why are some antibiotics less active against Gram-negative than Gram-positive bacteria?
- difficulty in penetrating the complex outer layer
- Pseudomonas aeruginosa: can cause life threatening infections in neutropenic patients and those with burns/wounds
what are examples of antibiotics that Gram-negative cell wall lipopolysaccharide is a barrier to?
- benzylpenicillin
- meticillin
- macrolides
- rifampicin
- fusidic acid
- vancomycin
what are antibacterial agents that interfere with folate synthesis or action?
sulfonamides
what are sulfonamide drugs that are still commonly used as systemic antibacterials? what are their uses?
- sulfamethoxazole (usually combined with trimethoprim as co-trimoxazole
- sulfasalazine (poorly absorbed in GI tract; used for UC and Crohns, IBD)
- silver sulfadiazine (used topically for burns)
- prasugrel (antiplatelet
- acetazolamide (carbonic anhydrase inhibitor)
- combined with pyrimethamine for drug-resistant malaria and toxoplasmosis
what are the typical target organisms of sulfonamides?
T. gondii, P. jirovecii
what is the mechanism of action of sulfonamides?
- sulfanilamide is a structural analogue of p-aminobenzoic acid (PABA), which is an essential precursor in the synthesis of folic acid, required for synthesis of DNA and RNA in bacteria
- sulfonamides compete with PABA for the enzyme dihydropteroate synthetase, and the effect of sulfonamide can be overcome by adding excess PABA
what is PABA? what is its function?
p-aminobenzoic acid
- essential precursor in synthesis of folic acid, which is required for DNA and RNA synthesis in bacteria
what do sulfanilamides and sulfonamides compete for?
- competet with PABA for the enzyme dihydropteroate synthetase
how can the effect of sulfonamide be overcome?
- by adding excess PABA
- some local anaesthetics which are PABA esters can antagonise the antibacterial effect of these agents
what are examples of bactericidal drugs? what do they do?
- antibiotics that interfere with bacterial cell wall synthesis (e.g. penicillins)
- antibiotics that inhibit crucial enzymes (e.g. quinolones)
generally kill bacteria
what are examples of bacteriostatic drugs? what do they do?
- antibiotics that inhibit protein synthesis (e.g. tetracyclines)
- sulfonamides
prevent growth and replication
when is sulfonamide action vitiated? what is resistance mediated by?
- in presence of pus or products of tissue breakdown, because these contain thymidine and purines, which bacteria utilise directly
- this bypasses the requirement for folic acid
- resistance is plasmid mediated and results from synthesis of bacterial enzyme insensitive to the drugs
what are pharmacokinetic aspects of sulfonamide?
- given orally
- well absorbed and widely distributed in the body
- risk of sensitisation or allergic reactions when drugs are given topically
- drugs pass into inflammatory exudates and cross placental and BBB
- metabolised in the liver
- major product is an acetylated derivative that lacks antibacterial action
what are unwanted effects of sulfonamides?
- hepatitis
- hypersensitivity reactions
- bone marrow depression
- acute renal failure due to interstitial nephritis or crystalluria
- cyanosis caused by methaemoglobinaemia
- nausea, vomiting, headache and mental depression
what are the components of folic acid?
- pteridine ring
- PABA
- glutamic acid
what is co-trimoxazole?
mixture of sulfamethoxazole and trimethoprim
what is the pathway of DNA synthesis in bacteria from PABA?
- PABA -> folate (by dihydropteroate synthetase)
- folate -> tetrahydrofolate (by dihydrofolate reductase)
- tetrahydrofolate -> synthesis of thymidylate etc.
- thymidilate -> DNA
what are the actions of sulfonamides and trimethoprim on bacterial folate/DNA synthesis?
sulfonamides: inhibit action of dihydropteroate synthetase (catalyses PABA -> folate)
trimethoprim: inhibit action of dihydrofolate reductase (catalyses folate -> tetrahydrofolate)
what is the mechanism of action of trimethoprim?
- bacteriostatic
- folate antagonist: resemble pteridine moiety of folate
- used to treat various urinary, pulmonary and other infections
- may be given as a mixture with sulamethoxazole as co-trimoxazole
- sulfonamides can potentiate the action of trimethoprim
what is the use of co-trimoxazole restricted to in the UK?
- Pneumocystis carinii (P. jirovecii)
- pneumonia (fungal)
- toxoplasmosis (protozoan)
- nocardiasis (bacterial)
what are the pharmacokinetic aspects of trimethaprim?
- well absorbed orally
- widely distributed throughout the tissues and body fluids
- reaches high conc. in lungs and kidneys, and CSF
- when given as co-trimoxazole, half the dose of each is excreted within 24h
- weak base; elimination by the kidney increases with decreasing urinary pH
what are unwanted effects of trimethaprim?
- folate deficiency with megaloblastic anaemia due to long-term administration
- nausea, vomiting, blood disorders and rashes
what are pyrimethamine and proguanil used for?
antimalarial agents
what are penicillins? what can they be destroyed by?
- beta-lactam antibiotics
- can be destroyed by bacterial amidases and beta-lactamases
what is the mechanism of action of penicillins?
- interfere with synthesis of the bacterial cell wall peptidoglycan
- after attachment to penicillin-binding proteins on bacteria, they inhibit the transpeptidation enzyme that crosslinks the peptide chains attached to the backbone of peptidoglycan
- inactivation of an inhibitor of autolytic enzymes in the cell wall, leading to lysis of the bacterium
what are some uses of penicillins?
- bacterial meningitis; benzylpenicillin, high doses IV
- bone and joint infections; flucoxacillin
- skin and soft tissue infections; benzylpenicillin, flucloxacillin; animal bites; coamoxiclav
- pharyngitis; phenoxylmethylpenicillin
- otitis media; amoxicillin
- UTIs; amoxicillin
- gonorrhea; amoxicillin and probenecid
- syphillis; procaine benzylpenicillin
- endocarditis; high dose IV benzylpenicillin
- serious Pseudomonas aeuginosa infections; ticarcillin, piperacillin
what are the types of penicillin?
- naturally occuring
- semisynthetic penicillins: beta-lactamase-resistant penicillins and broad spectrum penicillins
- extended spectrum penicillins
what are features of benzylpenicillin?
- active against a wide range of organisms and is drug of first choice for many infections
- main drawbacks are poor absorption in the GI tract and its susceptibility to bacterial beta-lactamases
what are examples of beta-lactamase-resistant penicillins? what is their administration and spectrum?
meticillin, flucoxacillin, temocillin
- action: given orally
- spectrum: Gram positive and Gram negative cocci and some Gram-negative bacteria
- many staphylococci are now resistant
what are examples of broad spectrum penicillins? what is their administration and spectrum?
ampicillin and amoxicillin
- administration: given orally, destroyed by beta-lactamases
- spectrum: Gram positive and Gram negative cocci and some Gram-negative bacteria and active against Gram-negative bacteria
what are examples of extended spectrum penicillins? what are their actions and spectrum?
- ticarcillin
- piperacillin
given orally; susceptible to beta-lactamases
spectrum: Gram positive and Gram negative cocci and some Gram-negative bacteria and active against Gram-negative bacteria; also active against pseudomonads
what are amoxicillin and ticarcillin sometimes given in combination with?
- beta-lactamase inhibitor clavulanic acid (e.g. co-amoxiclav)
- effective against many beta-lactamase-producing organisms
what is pivmecillinam?
prodrug of mecillinam, which has a wide spectrum of action
what are pharmacokinetic aspects of penicillin?
- oral absorption of penicillins varies, depending on stability in acid and their adsorption to foodstuffs in the gut
- can be given by IV injection
- intramuscular injection
- slow release preparations e.g. benzathine benzylpenicillin for syphillis as Treponema pallidum is a slowly dividing organism
- penicillins are widely distributed in body fluids, passing into joints, pleural and pericardial cavities, into bile, saliva and milk and across the placenta
- lipid insoluble; do not enter mammalian cells and cross BBB only if meninges are inflamed
- elimination of most penicillins occurs rapidly and is mainly renal; 90% through tubular secretion
what are some unwanted effects of penicillins?
- free from direct toxic effects (other than proconvulsant effect when given intrathecally)
- hypersensitivity reactions caused by degradation products which combine with host protein and become antigenic
- skin rashes and fever
- delayed type of serum sickness occurs infrequently
- anaphylactic shock
- alter bacterial flora in the gut; associated with GI disturbances and suprainfection
what are cephalosporins and cephamycins?
- beta-lactam antibiotics
- first isolated from fungi
- same mechanism of action as penicillins
- second choice for many infections
what are semisynthetic broad-spectrum cephalosporins? how are they produced? what are features of them?
- by addition to the cephalosporin C nucleus, of different side chains at R1 and/or R2
- water soluble and relatively acid stable
- vary in susceptibility to beta-lactamases
why has resistance to cephalosporins and cephamycins increased?
due to plasmid-encoded or chromosomal beta-lactamase
- chromosomal beta-lactamase is present in nearly all Gram-negative bacteria and is more active in hydrolysing cephalosporins than penicillins
- in several organisms a single mutation can result in high-level constitutive production of this enzyme
- resistance occurs when there is decreased penetration of the drug due to alteration of outer membrane proteins, or mutations of binding-site proteins
what are clinical uses of cephalosporins?
used to treat infections caused by sensitive organisms; patterns of sensitivity vary geographically and treatment is started empirically
- septicaemia (e.g. cefuroxime, cefotaxime)
- pneumonia caused by susceptible organisms
- meningitis (e.g. ceftriaxone, cefotaxime)
- biliary tract infection
- UTI
- sinusitis (e.g. cefadroxil)
what are pharmacokinetic aspects of cephalosporins and cephamycins?
- some cephalosporins are given orally
- most given parenterally, intramuscularly or IV
- after absorption, they’re widely distributed in the body and some cross the BBB
- excretion is mostly via the kidney, largely by tubular secretion
- 40% of ceftriaxone is eliminated in the bile
what are examples of cephalosporins that cross the BBB?
cefotaxime, cefuroxime and ceftriaxone
what are some unwanted effects of cephalosporins and cephamycins?
- hypersensitivity reactions and cross sensitivity
- nephrotoxicity
- drug-induced alcohol intolerance
- diarrhoea is common; can be due to C. difficile
a lady has streptococcal pharyngitis. what should be prescribed?
penicillin 500mg QDS, 10 days
what is an antimicrobial?
- agents produced by microorganisms that kill or inhibit the growth of other microorganisms in high dilution
- produced by microorganism
what are target points on a bacteria?
points of biochemical reaction crucial to the survival of the bacterium
- penicillin-binding proteins in cell wall
- cell membrane
- DNA
- ribosomes
- topoisomerase IV or DNA gyrase
- crucial binding site will vary with antibiotic class
what is an antibiotic?
- agents produced by microorganisms that kill oro inhibit the growth of other microorganisms in high dilution
- molecules that work by binding a target site on a bacteria
what are different mechanisms of antibiotic action?
- cell wall synthesis
- nucleic acid synthesis
- protein synthesis
what are examples of other beta-lactam antibiotics? what are they used for?
- cabapenems and monobactams
- used to deal with beta-lactamase-producing Gram-negative organisms resistant to penicillins
what are carbeapenems?
- e.g. imipenem
- used for beta-lactamase-producing Gram-negative organisms resistant to penicillins
- broad spectrum of antimicrobial activity, being active against many aerobic and anaerobic Gram-positive and Gram-negative organisms
- resistance to imipenem was low, and is increasing as some organisms have chromosomal genes that code for imipenem-hydrolysing beta-lactamases
- e.g. meropenem (not metabolised by the kidney) and ertapenem
what are unwanted effects of carbapenems?
- nausea and vomiting
- neurotoxicity
what are monobactams?
- used for beta-lactamase-producing Gram-negative organisms resistant to penicillins
what is an example of monobactams? what do they act on?
- aztreonam
- resistant to most beta-lactamses
- given by injection and has a plasma half-life of 2 hours
- unusual spectrum of activity and is effective only against Gram-negative aerobic bacilli e.g. pseudomonas species, Neisseria meningitidis and Haemophilus influenzae
- no action against Gram-positive organisms or anaerobes
what are some unwanted effects of monobactams?
- similar to those of other beta-lactam antibiotics
- doesn’t necessarily cross-react immunologically with penicillin and its products so does not usually cause allergic reactions in penicillin sensitive individuals
what are examples of glycopeptides?
- vancomycin (glycopeptide antibiotic)
- teicoplanin (longer lasting)
what is the mechanism of action of glycopeptides?
- beta-lactam antibiotics: interfere with the synthesis of the bacterial cell wall peptidoglycan
- vancomycin inhibits cell wall synthesis
what does vancomycin work against? what are pharmacokinetic aspects?
- inhibits cell wall synthesis
- effective mainly against Gram-positive bacteria
- not absorbed from the gut and is only given by oral route for treatment of GI infection with C. difficile
- for systemic use, it’s given IV and has a plasma half life of 8 h
what are some clinical uses of vancomycin?
- treatment of MRSA (often last resort) and other serious infections
- used in severe staphylococcal infections in patients allergic to penicillins and cephalosporins