Horizontal Gene Transfer Reading Notes Flashcards

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1
Q

Why is horizontal gene transfer important?

A

to acquire genes that may be important for specific environment;may be retained if gives competitive edge

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2
Q

what bacteria species no competent?

A

e coli

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3
Q

what can do to make competent

A

cacl2 (alter mem to allow import foregin DNA) or electroporation (shoot DNA in)

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4
Q

What is distinct about transformation?

A

cell do not choose what DNA is imported and what genes to keep.

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5
Q

what can use foreign DNA for?

A
  • repair genome if similar
  • as food
  • evolution to survive diff env
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6
Q

What process of transformation in gram positive bac?

A

Create a transformasome which includes protein to

  1. capture
  2. create pore
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7
Q

how is DNA brought into the pore?

A

nuclease degrades one strand and pulls the other through the pore ; once inside, the strand can be incorporated via recombination

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8
Q

What is growth phase dependent competence?

A

secretion of CF ; more bacteria = more CF = stim transformasome formation aka quorum sensing

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9
Q

why quorum sensing

A

bc if dilute waste energy bc unlikely encounter DNA but more = higher chance cousins die and you take their DNA

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10
Q

What makes gram negative species diff in transformation?

A
  • must overcome outer membrane and
  • typically natural transformers are always competent or competent when starved
  • specificity of transformation
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11
Q

how many origins of replication does F factor have

A

two; oriV (for regular replication and division) and oriT for transfer

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12
Q

What is the last portion transferred in recipient?

A

OriT

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13
Q

what does relaxase hold onto ?

A

5’ end

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14
Q

What happens when F plasmid integrate into host chromo?

A

it becomes Hfr and basically the entire chromosome becomes a F factor.

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15
Q

What is the last to be inserted into recipient in hfr?

A

f factor; rare for receipient become hfr cell or F+ when conjugate with an Hfr

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16
Q

What are the uses of F’ or partial diploids?

A

that can be the raw material that evolve new gene without affect host.

17
Q

Phage populations carry _____ segment of host DNA

A

different

18
Q

generalized transduction

A

is being able to uptake any part of host donor genome and transfer to recipient.

19
Q

Rec BCD does what?

A

it unwinds strand

20
Q

what does recA do?

A

recognize homology to mediate strand invasion

21
Q

ruvab?

A

branch migration

22
Q

ruvC

A

resolves

23
Q

waht can result from Ruv C cleavage?

A

linear recombinants that are degraded by nucleases

24
Q

What is site specific recombination?

A

not necc for lots of homology to recombine.