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MBD > FINALS - Bioinformatics > Flashcards

FINALS - Bioinformatics Flashcards

1
Q

two sequences are the SAME

A

identity

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2
Q

LINING UP two or more sequences to search for the maximal regions

A

alignment

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3
Q

RELATEDNESS of sequences

A

similarity

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4
Q

FIXED SET of commands

A

algorithm

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5
Q

a SPACE introduced in alignment to compensate for insertions or deletion in one of the sequences being compared

A

GAP

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6
Q

SIMILARITY attributed to descent from a common ancestor

A

HOMOLOGY

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7
Q

the SEQUENCE PRESENTED for comparison

A

query

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8
Q

the genetic sequence DATABASE

A

genbank

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9
Q

number of MATCHES to the query by chance

A

e-value

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10
Q

study on EVOLUTIONARY RELATEDNESS among species by comparing homologies and differences

A

phylogenetics

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11
Q

uses computers to STORE and ANALYZE molecular biological information

A

bioinformatics

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12
Q

about RNA MOLECULES in a living organism

A

transcriptomics

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13
Q

genomes of MICROBES are described within a specific environment

A

MICROBIOMICS

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14
Q

description of the chemical processes involving METABOLITES

A

metabolomics

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15
Q

description of the sequences of the WHOLE GENOME of an organism

A

genomics

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16
Q

description of all the entire complement of PROTEINS

A

proteomics

17
Q

DNA data bank of Japan

A

DDBJ

18
Q

european bioinformatics institute

A

EMBL

19
Q

database from NCBI

A

GenBank USA

20
Q

databases for proteins in Japan

A

PDBj

21
Q

databases for proteins in Europe

A

PDBe

22
Q

databases for proteins in USA

A

RCSB PDB

23
Q

determines the boundary of an exon and intron of eukaryotic gene

A

Ensembl

24
Q

contain ORIGINAL DATA in the form or primary sequence data or structural data as submitted by the scientific community

A

primary databases

25
Q

contain information that has been processed and DERIVED from teh raw data available in primary database

A

secondary databases

26
Q

COLLECTS and PRESENT data after comparing and filtering them from different primary databases and exhibit only the non-redundant sequences

A

composite databases

27
Q

a way of rearranging sequences of DNA, RNA, or protein to identify REGIONS OF SIMILARITY

A

sequence alignment

28
Q

matching the residues of two sequences across their ENTIRE LENGTH

A

global alignment

29
Q

matching of two sequences from regions which have MORE SIMILARITY WITH EACH OTHER

A

local alignment

30
Q

multiple sequence alignmengt tool that ARRANGES the sequences of dna, rna, or protein to identify REGIONS OF SIMILARITY

A

MUSCLE

31
Q

finds regions of LOCAL SIMILARITY between sequences

A

BLAST

MBD (5 decks)

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