Exam Four Flashcards
What is another term for macroevolution?
Speciation
Describe “species”
An evolutionary independent unit
Name four biological boundaries to gene flow
Physiological (cellular incompatibility), Morphological (anatomical), Behavioral (mate choice), Genetic (chromosomes, genes, alleles)
Describe the Biological Species Concept or BSC
If members of separate interbreeding populations mate and produce fertile offspring-> same species
If members of separate interbreeding populations cannot mate (physiology, morphology), will not mate (behavior), or mate and produce infertile (can be viable) offspring (genetics)-> different species
Describe the Morphospecies Concept or MSC
Traits/Characteristics
Skeletal and organ system
Describe the Phylogenetic Species Concept or PSC
Where well documented (molecular) phylogeny exists
Judgement on how much distance there needs to be for species vs subspecies
What are the three steps of speciation and what concept does it use?
1-Elimination or reduction in gene flow (1 population becomes 2)
2-Divergence, until
3-Separate species (by BSC)
Define allopatric speciation and describe the two forms
Different range, geographical barrier
Dispersal-From start to “habitat island”
Individuals are able to find compatible places randomly
Vicariance-Geographical barrier forms between a population
Define sympatric speciation
Same range
Define parapatric speciation and why it works
Nearby/Overlapping range
Reduction in gene flow, not elimination-little in ½ and 2/3 , almost none in ⅓
Which species concept is used for fossils?
MSC, morphospecies concept
What kind of speciation is Drosphila clines?
parapatric
What kind of speciation is Hawaiian Drosophia?
Allopatric-> Dispersal
What kind of speciation is snapping shrimp?
Allopatric-> Vicariance
What kind of speciation is hawthorne maggot fly?
Sympatric
What are the four levels of divergence?
Allele, Gene, Chromosome, and Genome
How does mutation lead to divergence at the allele level?
Same mutation do not occur in both populations->
New and different alleles appear in each population independently
How does selection lead to divergence at the allele level with the same selection pressures?
under directional selection patterns, different alleles can be fixed or lost
How does selection lead to divergence at the allele level with different selection pressures?
homozygote advantage pattern means that different alleles can be fixed or lost
How does selection lead to divergence at the allele level with quantitative traits?
Quantitative traits in a adaptive landscape (same selection pressure) can cause different alleles to be fixed or lost
How does nonrandom mating lead to divergence at the allele level?
Two populations can become fixed for contributing or non contributing alleles (inbreeding)
Many alleles fixed or lost
What can nonrandom mating lead to that aids in divergence? Give an example.
Nonrandom mating can become sexual selection, independent preferences in one population reinforce reduction in gene flow (even in the same or overlapping range)
Hawthorne and apple maggot flies
How can drift lead to divergence?
Different alleles fixed or lost in each population (with drift alone)
More likely that they will change then they will follow each other
Describe the founder effect in relation to divergence
Founder effect with small population (dispersal) means that initial allele frequencies are different and drift is much stronger
What are the two ways migration can lead to divergence?
Alleles introduced into one population and not the other (or change threshold level by changing allele frequencies)
Describe genetic distance
Over time two populations will accumulate differences in the actual alleles they have at each locus
How does genetic distance lead to divergence?
If two populations have the same genes, but different alleles at every point, mating may become impossible-> BSC
More genetic distance-> more incompatible
What extra thing does the environment at a single locus include?
The genotype at other genes -> multilocus selection
What is the simplest way to get macroevolution?
Microevolution + time (in thousands of generations)
Relate fitness and speciation by BSC
Fitness of hybrids is 0 (do not survive or infertile)
Describe the two ways new genes are created.
Unequal crossover-Crossover occurs where there are similar sequences, may make
one with a new region and one with a missing region
Reverse Transcription- A mRNA can be put back into the original DNA
Describe redundany in gene families, name some examples, and explain why it might be helpful.
Same function
Ribosomal genes, actin, tubulin, keratin
More is better to produce enough material/protein
How does redundancy, subfunctionalization, neofunctionalization, and nonfunctionalization occur in gene families?
One gene retains the original function, while one or more others change (or lose) the function
Describe subfunctionalization in gene families, name some examples, and explain why it might be helpful.
Altered function,
hemoglobin proteins and visual pigment proteins, the changed gene can be expressed at different times and have different (but similar) skills
Describe neofunctionalization in gene families, name some examples, and explain why it might be helpful.
New function,
Crystallins, can be a preadaptation by providing a new function (or just help)
Describe nonfunctionalization in gene families, name some examples, and explain why it might be helpful.
Loss of function, Vitamin C Synthesis Gene and Olfactory receptors, it is the most common and may prevent the wasting of energy (or just be harmful.
Describe chromosome inversions
Flipping a section a chromosome where there is no difference in phenotype because all genes are present, just in a different order/location
Describe how chromosome inversions are passed on
Inversion heterozygotes have reduced fertility (fitness), but they can still pass on their inversion, Eventually two heterozygoes will mate and produce a homozygote that has no reduced fertility and may have an advantage.
Describe how chromosome inversions lead to speciation
When there is normal, heterozygoes, and homozygotes, the hybrid has a much lower fitness and the homozygote may have some advantages (prevent intermating and create new species)
Describe chromosome translocations and describe how they are passed on (with gametes)
Parts of non-homologous chromosomes are switched, leading to 2 inviable, 1 translocated, and 1 normal gamete. Eventually two intranslocation heterozygotes will mate and produce a homo with no reduced fertility.
Describe the process of polyploidy and relate it to speciation
Diploid plant produces n gametes which go to a 2n zygote. Spindle failure produces a mosaic plant. Two 2n gametes produce a 4n adult. Breeding a 2n gamete with an n produces a sterile 3n adult -BSC
What term describes the speed of polyploidy speciation?
Instant (only a few generations)
Describe the hybrid zones and speciation results of a hybrid that has lower fitness
Narrow and short lived hybrid zones
Reinforcement of divergence
Describe pre and post-zygotic selection
Post-zygotic selection->
Mating and attempting to construct and provision an offspring with low fitness is wasteful
Mate choice preference traits-> Prezygotic selection
Positive assortative mating (inbreeding is selected for)
Describe the relationship between the speed of the formation of pre-zygotic selection and allopatric vs sympatric
Hybrid progeny more likely to be produced in sympatric
At the same level (low) of genetic distance, sympatric taxa have much higher prezygotic isolation
Prezygotic mate-selection traits evolve sooner
Describe the hybrid zones and speciation results of a hybrid that has equal fitness
Hybrid zone is relatively wide and long lived
Parental populations coalesce (after gene flow is reintroduced)
Not enough divergence
Describe the hybrid zones and speciation results of a hybrid that has higher fitness
Hybrid zones depend on whether fitness advantage occurs in new or old habitat
Stable hybrid zone or formation of new species
Describe the formation of higher hybrid fitness in plants
Species a has na chromosomes in gametes and species b has nb chromosomes in gametes, so Na + Nb in zygote (sterile)
Failure of the mitotic spindle in one cell ->2na + 2nb (mosaic plant)
Might have a flower, creates egg and pollen with half, zygote with 2na + 2nb (species C)
Describe the formation of higher hybrid fitness in vertebrates
Coywolf has a genome composed of 65% coyote, 10% dog, 25% wolf
Skilled at catching prey in forests (wolf), fields (coyote), and city (dog)
Broader diet
Define phylogeny
Evolutionary history of a group (taxon)
What two things can a phylogenetic tree tell you?
Pattern of branching events and order of speciation events
Define character
aspect of the phenotype being compared
Define character state
exact value of that trait
In a phylogenetic tree, what is polytomy?
When you can’t tell what diverged from what, looks like two v’s with their creases together and a line from the bottom
In a phylogenetic tree, what are branches and what do they show?
Lineages; common ancestor or leading to taxon
In a phylogenetic tree, what defines sister taxa?
Same branch (recent speciation events)
In a phylogenetic tree, what are clades?
A branch with all the taxa included
In a phylogenetic tree, what is the role of roots?
They allow you to determine the order of events
What is the most common error in phylogenies?
Over-interpretation
In a phylogenetic tree, what is the significance of the order of the taxa on top?
Nothing, cannot show relationship
In a phylogenetic tree, what is the significance of the length of lines?
Nothing, unless a scale is included
What information are unrooted trees based or not based on?
Common ancestors, not order of branching events
In a phylogenetic tree, what is the outgroup?
Closest taxa to the root, no common ancestor with others
What are the four steps to estimating a phylogeny?
Choose characters, generate all trees, add character states, choose the best one
What is the easiest way to choose the best tree in a phylogeny?
Parsimony, the tree with the fewest changes in state (add for each state, may be more than one spot to choose)
What are the four traits of good characters to choose for a phylogeny?
Heritable, Variable, Independent, Homologous
Describe synapomorphies
Traits evolved in a common ancestor and shared by all descendent taxa
Define homoplasy and name two ways it can form
Conflicting information about evolutionary relationships from analogous traits (convergent evolution) or reversal (change back to ancestral)
Describe the method for choosing the best tree based on genetic distance
Closer relative-> more shared alleles