Exam 4 Flashcards
Virus Shape: Helical
Nucleic acid within a hollow, cylindrical capsid made of capsomeres
Spring-looking
Virus Shape: Polyhedral
Many-sided, often icosahedral (20 triangular faces)
Virus Shape: Complex
Lack symmetry
Ex. bacteriophage
Prions
Misfolded proteins that cause host proteins to also misfold
Short for proteinaceous infectious particles
Have no genome involved; just a protein –> simpler infectious agent than a virus
Responsible for Mad Cow Disease and other neurological diseases
Prion diseases are genetic or acquired from the outside
We’ve only known about viruses for ~____ years
100
Tissue tropism
Even within a single host, a virus can only infect certain tissues
The virus has viral proteins that recognize receptors that are displayed on certain cells
Cellular tropism
Ex. a virus can infect a macrophage that has receptors, neurons don’t express those receptors so HIV can’t infect them
Virion
A complete, fully developed, infectious viral particle, found outside a host cell
Composed of nucleic acid surrounded by a protein coat
Capsid
Protein coat that surrounds a virus’s genome
Present in all viruses
Viruses require a ___ ___ for replication
host cell
Can’t be cultured in media like bacteria
Latent Viruses
Viruses that lay dormant in a host for an extended period of time
Virus still present, but doesn’t cause symptoms
Examples: Herpes simplexvirus (cold sores), Varicella virus (chicken pox, shingles, latent in nerve cells)
Viral genomes also vary in these ways (aside from DNA/RNA, single/double stranded)
Circular vs linear
Segmented (little fragments) vs non-segmented (one continuous piece)
Genome size – 1000’s to 250,000 nucleotides (smaller virus → smaller genome)
Envelope
Lipid bilayer that covers the capsid
Only found in some viruses
Formed from plasma membrane when a virus exits a host cell
Not made by the virus, just a part of the host cell’s membrane
Many viruses lack an envelop → naked (or nonenveloped)
Enveloped viruses are more susceptible to alcohol
Hand sanitizer helps tamper spread of infection;
COVID virus has envelope → alcohol dissolves spike proteins + envelope → no longer able to bind to host cell receptor
Lytic Cycle: Steps
- Attachment – phage attaches by the tail fibers to a receptor of the bacterial cell
- Penetration – DNA (genome) is injected into the bacterial cell; only the genome gets injected, not the whole phage
- Biosynthesis – production of phage DNA and proteins
- Maturation – assembly of phage particles
- Release – phage lyse the bacterial cell and release into the environment
Some RNA viruses are retroviruses, meaning…
They have an RNA genome they convert into a DNA version so that it can integrate into the host cell genome (ex.HIV)
Opposite of central dogma
Requires an enzyme that reads RNA and synthesizes DNA - Host cells do not have such an enzyme – cells never have to synthesize DNA from an RNA template
Retrovirus encode their own RNA-dependent DNA polymerase → reverse transcriptase (RT)
Lysogenic Cycle
Phage genome integrates/recombines into the bacterial genome → Prophage
Passed down as the bacterial cell divides (vertical)
At any given time, for a cell that contains a prophage, the prophage can excise itself and transition back into the lytic cycle
Temperate phage
Can choose between lytic and lysogenic cycles
Temperate phage and prophage are the same phage; depends on decision it makes
Life Cycle of Animal Viruses: Steps
- Attachment
- Entry
- Uncoating
- Biosynthesis
- Maturation
- Release
Attachment step in Life Cycle of Animal Viruses
virus binds to receptor on host cell
Entry step in Life Cycle of Animal Viruses
Virus enters host cell
Can occur through injection, receptor-mediated endocytosis (engulfed by host cell), fusion (only occurs for enveloped viruses)
Only uses one of these 3 routes
Fusion mode of entry in animal virus life cycle
Envelope (lipid bilayer) and membrane of host cell fuse
Only occurs for enveloped viruses
Uncoating step in Life Cycle of Animal Viruses
loss of capsid, releases nucleic acid into host cell
Biosynthesis step in Life Cycle of Animal Viruses
Production of nucleic acid and proteins
Process depends on Baltimore classification; If virus has DNA genome vs RNA genome
Important: 1. Viral genome must be replicated and 2. Viral proteins must be made
Maturation step in Life Cycle of Animal Viruses
nucleic acid and capsid proteins assemble
Release step in Life Cycle of Animal Viruses
New viral particles leaves the host cell
Can occur by rupture or budding (enveloped viruses)
Rupture/lysis: so many viruses are made that the cell bursts
Budding: new viruses made push against membrane, create bulge, keep pushing until membrane gives way and virus pops off, surrounded by the membrane.
The membrane parts now on it is the virus’ [new] envelope
Host range (tropism)
The spectrum of host cells a virus can infect
Certain viruses can infect only certain hosts, not everything out there
All organisms are susceptible to viruses [including bacteria]
Some viruses infect plants, others infect animals, others infect bacteria, etc; If they infect plants, for example, they don’t also infect animals → specificity
Within host, viruses typically only infect certain tissues/cells; Ex. COVID infects respiratory tract cells, not the liver or elsewhere
Host range is primarily determined by…
The ability of the virus to attach to the host cell and reproduce; does host produce the needed receptors or not
Attachment involves viral proteins and a receptor on the host cell
Tropism boils down to if the host cell is expressing a receptor on its surface that the virus can bind to so that it can get inside and cause an infection
Different viruses vary considerably in size
In general 20-1000 nm in length (very small)
Most are substantially smaller than bacteria
Some are roughly the same size as bacteria; these giant viruses are susceptible to smaller viruses (virophages)
Giant viruses can get infected by virophages
A prion is NOT a virus
All viruses have a nucleic acid genome
Some viruses have a DNA genome, other viruses have an RNA genome
Some viruses have a single-stranded genome, others have a double-stranded genome
These differences help us classify viruses → Baltimore classification system
Spike proteins
Project from the envelope of a virus
Spikes often bind receptors on the host cell
Bacteriophage (phage)
Virus that infects bacteria
Grown on media containing bacterial cells
Form plaques
Have been studied extensively as a model of virus replication; undergo lytic or lysogenic cycle
Lytic Life Cycle
When a bacteriophage docks on a cells surface, injects its genome, and converts the bacterial cell into a phage-producing factory
Results in lysis of the bacterial cell
Some viruses can cause persistent (or chronic) infections
number of virions gradually increases over time
Acute virus
A short-lived infection that resolves quickly
Viruses were initially distinguished from other infectious agents because they’re….
Small and obligate intracellular microbes
Obligates intracellular → viruses cannot reproduce on their own, need host cell to get into - however, some bacteria fit this description as well (e.g. Rickettsia)
We now distinguish viruses from cellular life forms based on their structure
Contain a single type of nucleic acid (DNA or RNA); cells have both, viruses have one or the other
Contain a protein coat (capsid)
Multiply within host cells using host machinery
Responsible for synthesis of structures that transfer viral nucleic acid to other cells; must exist host cell and infect new cells
Viruses can be grown in cell cultures
Plant/animals cells grown/maintained in media in the lab
Cell lines can be primary or continuous
Primary cell line
Derived from tissue, survive only a few generations
Aren’t able to receive survival signals from nearly cells
Continuous cell line
Derived from cancerous cells (immortal)
Ex. HeLa cells – isolated from cervical cancer from Henrietta Lacks
Cancer cells no longer rely on survival signals to survive
Much more useful; continue to grow
Virus Discovery
The study of viruses wasn’t possible until the 20th century
1886: Tobacco Mosaic Disease could be transferred from plant to plant
1892: the causative agent of Tobacco Mosaic Disease could pass through the pores of a filter. In contrast, bacteria get trapped in the filter. Infective agent was small enough to pass → tells us the agent wasn’t bacteria
1935: Tobacco Mosaic Virus was purified, enabling the study of its structure using electron microscopy
First time scientists ever saw viruses [within e. microscope]
[Bacterial] plaques
Zones of bacterial cell lysis
Formed by phages
Phage infects a bacterial cell, replicates to high numbers, lyses the cell, infects neighboring cells, etc.
Avisible clear area within a dense layer of bacteria (“lawn”) grown on an agar plate, where bacteria have been killed by a virus (bacteriophage), creating a zone of clearing that appears as a plaque; it’s an indicator of the presence and activity of a bacteriophage on the plate.
Which of the following years is closest to when viruses (such as the Tobacco Mosaic Virus) were first discovered?
1900
The interaction between viral surface proteins and host cell receptors is often responsible for:
host tropism
Which of the following components is common to ALL viruses?
capsid
Where is a prophage found?
Integrated into the bacterial genome
Which of the following enzymes is used by an RNA virus?
Viral RNA-dependent RNA polymerase
How are prions unique compared to other infectious agents (like bacteria and viruses)?
Prions lack nucleic acids
E. coli is part of the human gut microbiota. Instead of causing disease, E. coli often outcompete pathogens for resources, thereby reducing infection. This is an example of
Microbial antagonism
Which of the following statements are TRUE? Select all that apply.
All infections are caused by pathogens, All infectious diseases are caused by pathogens, All infectious diseases are caused by pathogens
Why did Typhoid Mary doubt that she was responsible for spreading typhoid fever?
She did not exhibit signs or symptoms of disease.
Which of the following are exceptions to Koch’s postulates? Select all that apply.
In addition to causing urinary tract infections, Escherichia coli is a member normal flora of the gastrointestinal tract
Pneumonia is a disease caused by multiple infectious agents
Treponema pallidum causes syphilis but is unculturable.
Which of the following is considered a communicable disease?
Flu