Exam 2: Ch 7 Flashcards

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1
Q

Metabolism

A

the complex network of chemical reactions that occur within a cell to convert nutrients into energy, build new molecules, and perform essential functions for life, including breakdown of waste products.

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2
Q

Anabolism

A

the metabolic process where cells build complex molecules, like proteins and carbs, from smaller simpler molecules, requiring energy (usually from ATP) to facilitate this construction and support cell growth and repair. Anabolism is essentially the “building-up” aspect of metabolism.

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3
Q

Catabolism

A

opposite of anabolism, is the set of metabolic pathways that break down large complex molecules like carbohydrates, proteins and lipids into smaller sub units, releasing energy in the process and storing it as ATP’s.

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4
Q

Define: metabolism, anabolism, catabolism. How are they similar and different?

A

Metabolism is the umbrella term for both anabolism and catabolism functions. Anabolism deals with building molecules whereas catabolism deals with breaking down molecules, both requiring ATP’s as energy interchangably. .

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5
Q

Know the 8 statements that guide the study of metabolic processes

A

Every cell acquires nutrients

Metabolism requires energy from light or from catabolism of nutrients.

Energy is stored in the form of ATP (Adenosine Triphosphate) or GTP (Guanosine Triphosphate) a less common form.

Cells catabolize nutrients to form precursor metabolites- small molecules such as amino acids and sugars.

Metabolites, ATP’s and enzymes are all precursors for anabolic reactions.

These anabolic reactions form macromolecules- like complex proteins, carbohydrates, lipids and nucleic acids.

Cells grow when they are able to anobilize and form these macromolecules.

Cells are then able to reproduce once they have doubled in size from the nutrients.

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6
Q

Oxidation and Reduction Reactions:

A

where electrons are transferred between molecules, often facilitated by enzymes, to breakdown larger compounds into smaller ones or vice versa.

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7
Q

ATP Production and Energy Storage:

A

the build-up and break-down of molecules facilitated by enzymes, leads to the production of energy in the form of ATP for cellular processes. The ATP Cycle is when ATP is broken down into ADP(Adenosine Diphosphate) and inorganic phosphate, releasing energy that can be used by the cell.

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8
Q

Enzymatic reactions in Metabolism:

A

Enzymes are proteins that speed up chemical reactions in the body. Each enzyme is designed to catalyze a specific type of reaction.

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9
Q

Catabolic pathways

A

release energy by breaking down complex molecules to simpler compounds. This energy is stored in organic molecules until it needs to do work in the cell, (Initally require ATP, but they result in a net gain of ATP)

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10
Q

Anabolic pathways:

A

consume energy to build complicated molecules from simpler compounds. The energy released by catabolic pathways is used to drive anabolic pathways.(Uses ATPs)

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11
Q

Exergonic reactions

A

is an net release of free energy and delta G is negative. Released free energy—> Perform Work. Delta G= -686 kcal/mol

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12
Q

Endergonic reactions:

A

absorbs free energy from its surroundings and delta G is positive. Photosynthesis is steeply endergonic, powered by the absorption of light energy. Delta G= +686 kcal/mol

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13
Q

Closed System:

A

is a scenario where a cell does not exchange any matter with its environment, meaning it can neither take in nutrients nore release waste products, A cell that has reached metabolic equilibrium has died, no exchange of nutrients,

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14
Q

Open System

A

cell maintains disequilibrium because they are open with a constant flow of material in and out of the cell. A healthy living cell will have an open system with a metabolic disequilibrium.

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15
Q

How many reactions can occur in one catabolic process?

A

A catabolic process in a cell releases free energy in a series of reactions, not in a single step. Multi-step depending on the specific molecule being broken down.

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16
Q

Describe oxidation-reduction reaction, how are electrons transferred in this reaction? What are oxidizer vs. reducer? Are electron carriers the oxidizers or the reducers? Name 3 major electron carriers in the cell?

A

Oxidation-reduction reaction: is the transfer of electrons from one molecule that donates electron to another molecule that accepts electrons. Cells use electron carrier molecules to carry electrons.

Oxidizer: losses the electrons relsulting in an increase in the oxidation number.

Reducer: gains the electrons resulting in a decrease in the oxidation number.
The electron carriers are the reducers.

Three electron carriers:
Nicotinamide Adenine Dinucleotide(NAD+)—>NADH
Nicotinamide Adenine Dinucleotide Phosphate(NADP+)—>NADPH
Flavin Adenine Dinucleotide (FAD)—>FADH2

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17
Q

Describe phosphorylation reaction to make ADP and ATP from AMP. Where does the energy used in anabolic pathway come from?

A

Phosphorylation: organic phosphate is added to substrate or the process of adding a phosphate group to a protein molecule.

Energy released from nutrients can be stored in high-energy phosphate bonds of ATP via phosphorylation of ADP.

Anabolic pathways use some energy of ATP by breaking a phosphate bond, the energy for building complex molecules in anabolism comes from then breakdown of other molecules in catabolism.

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18
Q

What are the roles of enzymes in metabolism?

A

Enzymes are organic catalysts that increase the likelihood of reactions. Specific for a substrate, aid in the building-up an breaking-down of molecules. Enzymes are proteins.

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19
Q

Describe six enzyme categories (names and functions)

A

Hydrolases: removes hydrogens
Isomerases: rearrange atoms
Ligases or Polymerase: joins molecules
Lyases: breaking chemical bonds
Transferases- transfer functional groups
Oxidoreductases

20
Q

Components of a holoenzyme.

A

A holoenzyme is a fully functional enzyme that consists of an apoenzyme and its cofactors making it active and ready to perform its biological functions. Ribosomes are an example of a holoenzyme.

Apoenzyme: protein portions that are inactive if not bound to cofactors.

Cofactors: the non protein part of the holoenzyme. Co factors can be metal ions or organic molecules called coenzymes. They attach to the holoenzyme.

21
Q

Are enzymes always proteins?

A

Yes, enzymes are almost always proteins,

22
Q

How do enzymes affect the activation energy requirement in a reaction?

A

Enzymes significantly lower the activation energy required for a chemical reaction to occur, essentially making it easier for the reaction to proceed by providing an alternative pathway with lower energy barrier, thus speeding up the reaction rate.

23
Q

What is “enzyme turnover number”? What can affect enzyme turnover number? Be able to interpret an enzyme’s activity on an activity chart and deduce the effects of temperature or pH or substrate concentration or inhibitors. What does “saturation point” mean?

A

The number of substrate molecules converted into a product by an enzyme in a unit of time when the enzyme is fully saturated with substrate. 1-10,000 molecules/sec

Temperature, pH levels, inhibitors and substrate concentrations can all affect enzyme turnover.

Keep in mind that denaturation of an enzyme is when an enzyme becomes disfigured and dysfunctional due to high levels of pH, temp etc.

Saturation Point: refers to the substrate concentration at which all active sites on an enzyme molecule are occupied by substrate molecules.

24
Q

Types of enzyme’s inhibitors? How do they inhibit enzyme’s activities?

A

Inhibitors: are substances that block an enzymes active site to prevent activity but do not denature the enzyme.

25
Q

Describe competitive vs. noncompetitive inhibitors of enzymes. What is another name for noncompetitive inhibition?

A

Competitive inhibitors- are molecules that fit in similarity as the substrate that it binds to.

Noncompetitive inhibitors- molecules that bind to an enzyme at a different site than the active site. Aka Allosteric Inhibitors

26
Q

Understand feedback inhibition

A

Feedback inhibitors: is a mechanism by which the concentration of certain cell constituents is limited. When the product accumulates in a cell beyond optimal amount, its production is decreased by inhibition of an enzyme involved in its synthesis.

27
Q

What does “amphibolic pathway” mean? Give examples. Be able to name the products of anabolism and catabolism for: carbohydrates, amino acids, proteins, nucleotides, fatty acids

A

Amphibolic Pathway: are metabolic pathways that have both catabolic and anabolic functions.

The Krebs Cycle in an example of an Amphibolic pathway.

Anabolism Functions:
Nucleotides—> Nucleic Acids—> Chromosomes
Amino Acids—> Proteins—> Enzymes/Membranes
Carbohydrates—> Starch/Cellulose—>Cell Wall
Fatty Acids—> Lipids/fats—> Membrane/Storage

Catabolism Functions:
Carbohydrates—> Glucose—> Glycoslysis—> Peruvian Acid

28
Q

Glycolysis:

A

Glycolysis:

breaks down glucose into pyruvate generating a small amount of 2 ATP’s (function with or without oxygen: Aerobic or Anaerobic)

Occurs in cytoplasm of most cells

Glucose + 2 ATP + 2NAD —> 2 Pyruvic. Acid + 4 ATP + 2NADH + 2H
Net Products= 2 Pyruvic Acid + 2ATP + 2NADH + 2H

29
Q

Kreb Cycle:

A

the kreb cycle further oxidizes pyruvate into Acetyl-CoA.
Great amount of energy remains in bonds of Acetyl-CoA. The Krebs cycle transfers much of this energy to coenzymes NAD and FAD.
Occurs in cytoplasm of prokaryotes and in matrix of mitochondria in eukaryotes.
Oxidation of Acetyl-CoA produces NADH, FADH and ATP.

30
Q

Electron Transport Chain:

A

Electron Transport Chain:
A series of carrier molecules that are in turn, oxidized and reduced as electrons are passed down the chain
Occurs within the inner membrane of the mitochondria

31
Q

Fermentation:

A

A biochemical process that extracts chemical energy from carbohydrates without oxygen.
Releases energy from oxidation of organic molecules
Does not use Krebs cycle or ETC

32
Q

What is the key difference between aerobic and anaerobic respiration?

A

Aerobic Respiration: occurs in the presence of oxygen, oxygen requirement, aerobic respiration produces significantly more ATP energy per glucose molecule compared to anaerobic respiration

Anaerobic Respiration: a process that occurs in cells when they break down sugars to produce energy without oxygen.

33
Q

What is chemiosmosis?

A

The movement of ions across a semipermeable membrane, from areas of higher concentration to an area of lower concentration.Higher charge to lower charge.

33
Q

What are the two alternative methods to glycolysis? Is there a difference in the amount of energy produced?

A

Pentose Phosphate Pathway: uses pentose sugar and NADPH, produces 1 ATP instead of 2 ATP, operates with glycolysis

Enter-Doudoroff Pathway: Produces 1 ATP, does not involve glycolysis

34
Q

Alcohol Fermentation:

A

refers to an anaerobic process where microorganisms, primarily yeast, converts sugars like glucose into ethanol (ethyl alcohol + CO2) and carbon dioxide as byproducts, essentially using sugar as an energy source in the absence of oxygen.

35
Q

Acid Fermentation:

A

metabolic process in which bacteria or other microorganisms convert sugars into acids specifically Lactic Acid. Homolactic fermentation—> Produces Lactic Acid. Heterolactic fermentation—> Produces lactic acid and other compounds.

36
Q

What are the indicators if a bacterial species performs alcohol or acid fermentation or both?

A

Primary indicators are a change in pH levels, the presence of gas bubbles and end products.

37
Q

Describe lipid catabolism.

A

is the process of breaking down lipids through chemical reactions and pathways. Conversion of fatty acids to Acetyl-CoA.

38
Q

Describe protein catabolism.

A

Is the process of breaking down proteins into amino acids, which are then used for energy or to build new proteins.

39
Q

is the transfer of electrons from one molecule that donates electron to another molecule that accepts electrons. Cells use electron carrier molecules to carry electrons.

A

Oxidation-reduction reaction

40
Q

losses the electrons resulting in an increase in the oxidation number.

A

Oxidizer

41
Q

gains the electrons resulting in a decrease in the oxidation number.

A

Reducer

41
Q

Nicotinamide Adenine Dinucleotide(NAD+)—>NADH

Nicotinamide Adenine Dinucleotide Phosphate(NADP+)—>NADPH
b
Flavin Adenine Dinucleotide (FAD)—>FADH2

A

Three electron carriers:

42
Q

a fully functional enzyme that consists of an apoenzyme and its cofactors making it active and ready to perform its biological functions. Ribosomes are an example of a holoenzyme.

A

holoenzyme

43
Q

protein portions that are inactive if not bound to cofactors.

A

Apoenzyme

44
Q

the non protein part of the holoenzyme. Co factors can be metal ions or organic molecules called coenzymes. They attach to the holoenzyme.

A

Cofactors