Exam 1 Flashcards
List 6 ways that viruses impact domestic animals, humans, and science
- Common agents of Dz that you may encounter with some frequency
- High economic impact diseases
- Zoonotic diseases
- Viruses induce cancer in animals
- Newly emerging disease
- Tools for cell biology, gene therapy, vaccines
What is a virus
an infectious agent comprised of one or more molecules of DNA or RNA surrounded by a protein coat, and sometimes a lipid envelope
Replication
Bacteria vs Viruses
Bacteria: binary fission
Viruses: assembly line
Genetic Material
Bacteria vs Viruses
Bacteria: Both RNA and DNA
Viruses DNA or RNA
Protein production?
Bacteria vs Viruses
Bacteria: Yes
Viruses: No
Energy production?
Bacteria vs Viruses
Bacteria: Yes
Viruses: No
Requirement for Repro?
Bacteria vs Viruses
Bacteria: can replicate/divide on their own
Viruses: requires a cell
Susceptible to abx?
Bacteria vs Viruses
Bacteria: Yes
Viruses: No
List the 5 major primary sources of virus that affect animals
- Transiently infected animals
- wildlife
- environment
- persistently infected animals
- arthropods
Ways to mitigate transmission of a virus
sanitation
vaccination
flea/tick prevention
quarantining
define Virion
the intact, complete, physical infectious virus particle
virus genome structure
linear or circular
single stranded or double stranded
define capsid
protein that surrounds the viral genome
capsid proteins are encoded by the ?
viral genome
2 fundamental patterns of capsid proteins
icosahedral and helical
which capsid pattern is common in spherical viruses
icosahedral
which pattern is the most efficient way of forming a capsid shell?
icosahedral
the more icosahedral capsule produced, the (smaller/larger) the virus
larger
which capsid pattern is seen in all rod-shaped animal viruses?
helical
viral genome forms a spiral in the capsid (icosahedral or helical)
helical
describe an evelope
lipid and proteins that surround the capsid
(lipid bilayer and glycoproteins)
all animal viruses that are helical are (naked/enveloped)
enveloped
the lipid bilayer portion of an envelope is acquired by ?
budding through a host cell membrane (usually the plasma membrane)
another name for glycoproteins within an envelope
spikes or peplomers
matrix
inner layer of envelope used to protect rigidity
nucleocapsid
additional layer surrounding the genome
tegument
“packing” between the capsid and envelope of herpesviruses
(enveloped/non-enveloped) viruses are more fragile
enveloped
5 ways that inactivate an enveloped virus
- more heat labile
- more vulnerable to oxidation
- more susceptible to freezing and thawing
- more susceptible to dessication
- inactivated at low pH
capsid proteins (are/are not) highly conserved
are
Function of the capsid
- mediated binding to cell membrane for entry
- promotes uncoating after entry
- packages genome during assembly
- facilitates exit from the cell
- mRNA is translated by capsid proteins
Functions of the envelope
- carry glycoproteins that are important for interaction with the host cell
- binding to host cell receptors
- fusion with cell membrane for entry
- important in uncoating for some viruses
- facilitate exit from host cells
- viral GPs are often protective or neutralizing agents
define serotype
why is it important?
a set of viruses that can be distinguished from other viruses in the same species on the basis of antigenic properties.
important for understanding neutralizing properties
3 major viral characteristics/critera for classification of viruses
- type of viral genome (RNA, DNA, +, -)
- virion structure (enveloped or not, capsid symmetry)
- strategy of replication
describe virus attachment
binding and attachment of the virion to the host cell
the viral attachment protein is on the (host cell/virion)
virion
the virus receptor is on the (host cell/virion)
host cell
describe penetration
normal cellular process for uptake of macromolecules via a specific receptor
penetration is used by (enveloped/naked/both)
both enveloped and naked viruses
can a naked virus undergo fusion?
no, requires an envelope
cells without appropriate receptors (are/are not) susceptible to infection by the virus
are not
what does penetration provide/facilitate
provides an environment that promotes fusion or uncoating
facilitates intracellular trafficking
how do naked viruses penetrate a cell membrane
membrane puncture
direct penetration (perforation or lysis)
how to enveloped viruses penetrate cell membranes?
membrane fusion using fusion proteins in the virus envelope
how do fusion proteins work?
they contain hydrophobic domains (fusion peptides) that are inserted into the cell membrane. the inactive fusion peptide needs to be activated by a conformational change
how is a fusion protein activated? what follows activation?
it is cleaved by a host protease at the cleavage site -> activation and membrane fusion
describe uncoating
removal of capsid, release of the viral genome (DNA or RNA)
is uncoating independent of penetration?
can occur simultaneosly or independent of penetration
describle biosynthesis
synthesis of mRNAs recognized nby the cell translation machinery - makes proteins for replication
goal of biosynthesis
replicate the viral genome! new genomes for packing into virions
describe assembly
virus proteins and genomic nucleic acid must co-localize and assemble into a functional virus particle
how are non-enveloped viruses released?
generally requires cell lysis
how are enceloped viruses released
may or may not require cell lysis.
can undergo budding which is not lethal to the cell
Viral Growth curve: What is A?
What steps of viral replication does this step match with?
Virus Absorption
Attachment and Penetration
Viral Growth curve: What is B/D?
What steps of viral replication does this step match with?
Eclipse Period
Virus uncoating and sythesis of genome and proteins
Uncoating and biosynthesis
Viral Growth curve: What is C?
What steps of viral replication does this step match with?
Virus assembly, maturation and virion release
Assembly and Release
Viral Growth curve: What is happening at E?
virus accumulating intracellularly
Viral Growth curve: What is happening at F?
virion begins to accumulate extracellularly
Viral Growth curve: What is happening at G?
large increase in extracellular virus - a lytic virus will burst
describe the eclipse period
there are no full virus particles. The virus has opened its capsid or envelope so the parts are disassembled. No detectable virions at this stage
What does the viral growth curve tell us about a virus?
- virus production is step wise (not linear or exponential)
- the replicating entity is actually a virus (only viruses have an eclpise phase)
- how fast the virus replicates
- how many progeny particles are pruduced per cell (burst-size or yield)
what is the primary determinant of host cell specificity?
the appropriate receptor
What steps of virus replication can Ab interfere in?
Attachment and penetration (neutralizing Abs)
Change in a receptor can result in?
expansion of tissue tropism, host range, and emerging disease
How can Protease cleavege site and distribution of cellular proteases affect a virus
they can affect tissue distribution and pathogenicity (Ex: low pathogenic vs high pathogenic avian influenza)
What is involved in viral biosynthesis for DNA viruses?
DNA viruses usually use host cell proteins and enzymes to make additional DNA that is transcribed to messenger RNA (mRNA) by DNA-dependeent RNA-polymerase , which is then used to direct protein synthesis.
What is involved in viral biosyntheses for RNA viruses?
RNA viruses use their own polymerase (RNA-dependent RNA-polymerase) to transcribe their genome into mRNA
both RNA and DNA viruses must be transcribed into (?), then to viral proteins
(+) mRNA
why must replication of all viruses result in production of positive sense mRNA?
all viruses must make mRNA that can be recognized by the host translational machinery
two strategies that RNA viruses employ to produce positive sense mRNA
use virus encoded enzymes (polymerases) for replcation
(-) RNA –RdRp–> (+) RNA –> protein
or use a reverse transcriptase
RNA –RT–> DNA –> (+) RNA –> protein only retroviruses can do this
(DNA/RNA) viruses are more prone to developing genomic mutations
RNA
Why are RNA viruses more prone to developing genomic mutations?
lack of proofreadinf functions leads to a higher rate of error during RNA virus genome replication
why are viral encoded polyproteins and polymerases excellemt targets for developing antiviral therapeutics?
the pathways are not normally found in mammalian cells and are necessary for viral reproduction
Where does cell assembly occur for RNA viruses?
in the cytoplasm of the cell (they bring their own enzymes! don’t need access to the nucleus)
Where does cell assembly occur for DNA viruses?
in the nucleus of the cell
How is location of viral cell assembly useful in indentifying viral infection in cells?
the site of assembly is often where diagnostic inclusion bodies are seen by light microscopy
what is a susceptible cell
the cell is sensitive to infection by a particular virus. largely a function of presence or absence of receptors
what is a permissive cell
the cell is able to support complete replication of a particular virus. this is a function of the interal biochemistry of the cell.
for an infection to be successful, the cell has to be (permissive/submissable)
both!
Cytolitic infections: CPE?
Yes
productive persistent infections: CPE?
little to none
latent persistent infections: CPE?
usually no effects on cell