Epigenetics Flashcards

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1
Q

Epigenetic Trait

A

Stable, mitotically and meiotically heritable phenotype that results from changes in gene expression without alterations in the DNA sequence

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2
Q

Epigenetics

A

Study of the ways in which these changes alter cell- and tissue-specific patterns of gene expression

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3
Q

Epigenome

A

Refers to the Epigenetic state of a cell

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4
Q

Epigenetics have been implicated in:

A
  • Progressive restriction of gene expression during development
  • Allele-specific expression in gene imprinting
  • Environment genome interactions during prenatal development that affect adult phenotypes
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5
Q

Abnormal regulation of the epigenome leads to human genetic disorders such as:

A

Prader-Willi syndrome, Angelman syndrome, and Beckwith-Weidemann syndrome

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6
Q

Epignetic changes occur through three major mechanisms:

A

Methylation: reversable; addition or removal of methyl groups

  • Histone modification and chromatin remodeling: alter the accessibility of genes for transcription
  • Non-coding RNA
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7
Q

Methylation

A
  • DNA takes place after replication and during differentiation of adult cells
  • Addition of a methyl group catalyzed by methyltransferase enzymes
  • Occurs on cytosine bases adjacent to guanine called CpG dinucleotides
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8
Q

CpG Islands

A

Located near promoter sequences adjacent to genes

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9
Q

Histone Modification

A
  • Chromatin is composed of DNA wound around an octamer of histone proteins to form nucleosomes
  • Modifications occurs at conserved amino acid sequences in the N-terminal histone tails
  • Chemical modification of histones alters the structure of chromatin, making genes accessible or inaccessible for transcription
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10
Q

Acetylation by Histone Acetyltransferase (HAT)

A

Opens up the chromatin structure, making genes available for transcription

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11
Q

Removal of the Acetyl groups by Histone Deacetylase (HDAC)

A

Closes the configuration, silencing genes by making them unavailable

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12
Q

Histone Code

A

Sum of the complex patterns and interaction of histone modifications that change chromatin organization and gene expression

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13
Q

RNA Interference

A

After transcription miRNA molecules associate with protein complexes to form RNA-induced silencing complexes (RISCs)

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14
Q

Long noncoding RNA (lncRNA)

A
  • Share many properties with mRNAs (5’ caps, 3- poly-A tails, splicing)
  • Found in nucleus and cytoplasm of cells
  • lncRNAs lack frame that codes for the insertion of amino acids into a polypeptide
  • Binds to chromatin-modifying enzymes
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15
Q

Imprinting

A
  • Imprinted genes show expression of only the maternal allele or the paternal allele
  • Parent-specific pattern of allele expression happens occurs during gamete formation
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16
Q

Once a gene has been methylated and imprinted:

A
  • Remains transcriptionally silent during embryogenesis and development
  • Most imprinted genes direct aspects of growth during prenatal development
17
Q

Reprogramming

A

Occurs in the parental germ line and in the developing embryo just before implantation

18
Q

Human disorders

A

Associated with imprinting have their origins during fetal growth and development

19
Q

Cancer

A
  • Hypomethylation is a property of all cancers examined to date
  • Complex diseases have some strong links to environmental factors (lung cancer)
  • Now viewed as a disease that involves both epigenetic and genetic changes that lead to alterations in gene expression
20
Q

DNA Hypomethylation

A

Reverses the inactivation of genes, leading to unrestricted transcription of many gene sets including oncogenes

21
Q

Hypermethylated genes

A

Include those involved in DNA repair, differentiation, apoposis, and drug resistance

22
Q

Evidence that supports stem cell involvement in epigenetic changes

A
  • Epigenetic changes can replace mutation in silencing individual tumour-suppressor genes or activating oncogenes
  • Global hypomethylation may cause genome instability and the large-scale changes chracteristic of cancer
  • Epigenetic modifications are more effective than mutations in transforming normal cells int malignant cells
23
Q

Epigenetic Therapy

A

Reactivation of genes that have been silenced by methylation or histone modification

24
Q

Environmental Agents

A

Nutrition, chemicals, and physical factors such as temperature can alter gene expression by affecting the epigenetic state of the genome

25
Q

NIH Roadmap Epogenomics Project

A

Many aspects of health and susceptibility to diseases are related to epigenetic regulation or misregulation of gene activity

26
Q

Human Epigenome Project

A
  • Collects and catalogs data on a set of human epigenomes to serve as reference standards
  • Multinational, public/private consortium established to identify , map and establish the functional significance of all DNA methylation patterns in the human genome