DNA transcription Flashcards

1
Q

What is transcription?

A

Reading the DNA sequence and making RNA from the information

  • enzymatic synthesis of RNA from a DNA template and forms the first step in gene expression
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2
Q

Transcription is the generation of a ______ ____ (____)

A

messenger RNA (mRNA)

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3
Q

What is translation?

A

The enzymatic synthesis of protein from a transcribed gene sequence into a functional RNA molecule mRNA

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4
Q

Transcription is _____ by an RNA _____ enzyme complex which requires:

  • a ____ template
  • _______ (ATP, GTP, CTP & UTP)
A

catalysed
polymerase

dsDNA
ribonucleotides

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5
Q

RNA synthesis is in the __ to __ direction

A

5’

3’

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6
Q

What does the sense strand do?

A

carries the gene sequence that will be copied into an RNA molecule that will be later translated into protein

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7
Q

What does the antisense strand do?

A
  • used as a template to generate a copy of the sense strand through complementary base airing.
  • also carries the gene sequence for RNA molecules that are usually non-coding and function as structural/regulatory molecules
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8
Q

In ______ there is a _____ _____ _____

A

prokaryotes

single RNA polymerase

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9
Q

How many RNA polymerase enzymes are there in eukaryotes?

A

3 - I, II and III

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10
Q

List what each polymerase is responsible for transcribing different RNAs

A

I - transcribes most rRNA (ribosomal RNAs)
II - responsible for transcription of all-protein coding genes
III - transcribes tRNAs (transfer RNAs)

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11
Q

What does initiation of transcription involve?

A

The binding of RNA polymerase complex to the dsDNA

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12
Q

_____ can be switched on ____ or ____ based on the ______ elements present and if they are ______ by bound proteins

A

Promoters
weakly or strongly
sequence
stimulated

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13
Q

The dsDNA needs to be locally _____ for the RNA polymerase to access the ____ _____

A

unwound

promoter sequence

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14
Q

What is the site of action known as for when the polymerase starts to synthesise the mRNA at a specific nucleotide?

A

start site/initiation site

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15
Q

In elongation, the polymerase is moving in the 3’ to 5’ direction along what strand?

A

antisense/template DNA strand

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16
Q

What happens to the DNA duplex ahead of reformation?

A

The polymerase locally unwinds the DNA duplex ahead of RNA synthesis activity
The helix is reformed behind the polymerase enzyme

17
Q

E coli synthesises around ___ bases per ____ at ____ degrees

A

40
second
37

18
Q

What stabilises the assemled holoenzyme?

A

w-subunit

19
Q

What is responsible for promoter recognition?

A

σ

20
Q

What is the most common σ factor in E.coli?

A

σ70

21
Q

What is the transcription start site denoted by ?

A

+1

22
Q

What is the promotor sequence denoted by?

A

a negative number since they are before the initiation site

23
Q

How many base pairs long is the σ70 promoter?

A

40-60 base pairs

24
Q

What region has been shown to bind the RNA polymerase holoenzyme?

A

-55 to +20

25
Q

What region is very strongly associated with the holoenzyme?

A

-20 to +20

26
Q

Sequences up to ____ are required for _____ transcription

A

-40

efficient

27
Q

What is the -35 region?

A

Recognition sequence

28
Q

What is the -10 region?

A

DNA unwinding site

29
Q

List the 5 steps of E.coli transcription

A

1) Promoter binding
2) DNA unwinding
3) Transcription initiation
4) mRNA elongation
5) Termination

30
Q

What is common in prokaryotes?

A

Transcription of a particular gene is controlled by a regulatory region of DNA near the site of transcription

31
Q

What is common in eukaryotes?

A

Some regulatory regions are like simple switches, while others are like a microprocessor and respond to a variety of signal inputs

32
Q

Specific proteins bind to the _____ region of the DNA to turn ___/____ the gene

A

regulatory

on/off

33
Q

The proteins bind to the _____ of the DNA by _____ specific sequences

A

outside

recognising

34
Q

Bases are mostly on the _____ of the helix but the edges of the base pairs are ______ at the surface

A

inside

exposed

35
Q

What do the exposed edges provide opportunities for?

A

interactions via hydrogen bonding and hydrophobic interactions in both minor & major grooves

36
Q

Where do most regulatory proteins bind?

A

In the major groove

37
Q

Give an example of transcription

A

lac operon

38
Q

Explain what lacY, lacZ and lacA allow for

A
  • lacY allows lactose uptake from media
  • lacZ converts lactose to glucose & galactose (main reaction) and Allolactose (side reaction)
  • lacA physiological function in lactose metabolism unknown