Chapters 12, 13, 14, & 15 Flashcards
Scientists credited with discovering the DNA structure; what year?
Watson & Crick (1953)
Took strain of bacteria that doesn’t make us sick to make one that does; “cells have some sort of transforming principle, but i don’t know what it is”; what year?
Griffith (1928)
Thought transforming principle was DNA; what year?
Avery (1944) (Macleod & McCarty)
Convinced scientific world that DNA was the transforming principle; what year?
Hershey & Chase (1952)
Hershey & Chase labeled ___ with radioactive label in DNA & labeled ___ with radioactive label in proteins. Which showed up in daughter cells?
Phosphates; proteins; phosphates
What bond are the 2 DNA strands connected by?
Hydrogen bonds
Strands in DNA go in opposite directions
Directionality
Hydroxyl group is bound to the #3 Carbon
3 prime end
has a phosphate bound to the #5 Carbon
5 prime end
3 prime & 5 prime connect going in opposite directions
Anti-parallel
When does DNA replication occur?
S Phase of Interphase
Every DNA molecule has an old and new strand
Semi-conservative
Figured out that DNA replication was semi-conservative; what year?
Meselson & Stahl (1958)
When a new strand of DNA is being built, new nucleotides can only be added to what end?
3 prime end
In a DNA molecule, the __ end is the oldest and the __ end is the newest
5 prime; 3 prime
Assembled from 5 prime to 3 prime direction
DNA assembly
What will be used as a template to make new DNA?
Old strands (parent strands)
Enzyme that reads the template strand and builds the new strand
DNA Polymerase 3
Protein that binds at the rear of the polymerase that encircles the DNA; holds materials together so replication can occur efficiently
DNA sliding clamp
Parental strands unwind where in bacteria?
ORI
Enzyme that separates 2 strands of DNA so they can replicate; unwinds sections at a time
DNA helicase
“Y Structure” were the 2 strands are separated and where replication begins
Replication fork
Keep the molecule from winding back together immediately
Single Stranded Binding Proteins (SSBs)
Enzyme that goes ahead of the replication fork and prevent s overwinding; will nick the DNA to keep it from overwinding and breaking
Topoisomerase
Glue-like enzyme that seals breaks in DNA back together to make the strand continuous
DNA Ligase
Lays down RNA primer; builds small piece of RNA to start the new DNA strand
Primase
Strand of DNA that is being built continuously
Leading strand
Strand of DNA that is being built sections at a time
Lagging strand
Each of the sections of the lagging strand
Okazaki fragments
Main polymerase in DNA replication
Polymerase 3
Enzyme that will take out RNA primer and replace it with DNA nucleotides
Polymerase 1
Area where the 2 replication forks join together; section that is unwound for replication to occur
Replication bubble
Sequence of nonsense DNA near the ends of chromosomes; they’re not coding for anything/ they are just there; buffer to prevent the loss of important genes
Telomere
Enzyme that builds telomeres at the end of the chromosomes; made of proteins and RNA
Telomerase
Telomerase are most active during ___
embryonic development
Germ cells are ___
Sex cells
The length of the telomere tells what
How many times the cell is supposed to go through division
What happens to cancer cells’ telomerase?
It gets reactivated and the cells divide when they shouldn’t
What is the most common mistake in DNA replication?
When Polymerase 3 adds the wrong nucleotide
2 ways that errors can be corrected in DNA replication
Proofreading mechanism, DNA repair mechanism
Only occurs if Polymerase 3 realizes it made a mistake immediately; if polymerase sees it attaches wrong nucleotide, it immediately removes it and replaces it with the correct one
Proofreading mechanism
Occurs after replication is over; errors are usually identified bc there is a kink or bulge in the DNA;
DNA Repair mechanism
Smaller circles of DNA in Bacteria that carry different (& less) genes than the main chromosome
Plasmids
Some genes on plasmid have been associated with ___
antibiotic resistance
Proteins that go with the DNA and make up the Chromatin; proteins that pack the DNA into the nucleus; also play a role in general DNA activity
Histones
Loosely packed chromatin/ DNA
Euchromatin
Densely packed chromatin / DNA
Heterochromatin
Proteins that are associated with DNA that aren’t histones (Don’t help pack DNA into nucleus) a lot are associated with gene expression
Non - histone
DNA is transcribed into RNA
Transcription
RNA is translated into a protein
Translation
Process of transcription and translation
Central Dogma
___ is directly associated with gene expression
Protein
When the genetic code reads in triplets, it is called a ___
Codon
How many codons are there?
64
Codons that code for something; how many
Sense codons; 61
Codons that don’t code for something; how many
Nonsense codons; 3
How many different amino acids are there?
20
___ & ___ are the only amino acids that have 1 codon
Methionine and tryptophan
Methionine’s code is ___ which is the start codon that begins transcription then translation
AUG
What are the 3 stop codons?
UAA, UAG, UGA
Reads the DNA sequence in transcription
RNA polymerase
Control sequence where transcription will begin; everything that’s needed for transcription assembles here
Promoter
Sequence within the promoter where helper proteins bind to start transcription
TATA Box
Helper proteins that help with transcription
TF (Transcription factors)
___ Builds the new strand of RNA using the DNA strand as a template
RNA Polymerase 2
RNA strand is made from __ to __ direction
5’ to 3’
Template strand is read from __ to __ direction
3’ to 5’
Process of getting transcription started
Initiation
What is one of the biggest differences in DNA replication and translation?
Don’t have to lay down an RNA primer
RNA polymerase 2 continues to build the new strand of RNA by adding RNA nucleotides
elongation
RNA Polymerase 2 reach a stop codon; everything disengages
Termination
___ in bacteria are in DNA to tell it to stop
Terminators
Transcription occurs in the ____ of eukaryotic cells
Nucleus