Chapter 3 Flashcards

1
Q

units to measure microorganisms

A

nanometer
micrometer

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2
Q

A simple microscope has only ___ lens.

Similar to a magnifying glass, but whit a much better (higher magnification) lens

A

1

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3
Q

Light microscopy

A

Any kind of microscope that uses visible light to observe specimens

Including:

Compound light microscopy
Darkfield microscopy
Phase-contrast microscopy
Differential interference contrast microscopy
Fluorescence microscopy
Confocal microscopy

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4
Q

Compound light microscope

A

Magnify the image from the objective lens again by the ocular lens

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5
Q

Formula of total magnification

A

Total objectives x Total ocular

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6
Q

Resolution

A

the ability of the lenses to distinguish two points

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7
Q

a microscope with a resolving power of 0.4 nm can distinguish between two points at least ___ nm apart

A

4

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8
Q

Better solution = ____ wavelength

A

shorter

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9
Q

the visible light with the shortest wavelength is

A

390nm

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10
Q

For microscopes using visible light, the limitation for the smallest subjects is ___ __, because 390 nm lights cannot interact with subjects < ___ __

A

200nm x2

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11
Q

To see things smaller than 200 nm, you need smaller ________ particles, such as ______ in electron microscopes

A

wavelength
electrons

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12
Q

The ________ _____ is a measure of the light-bending ability of a medium (for example, the sample is a medium).

Light may refract after passing through a specimen to an extent that it does not pass through the _______ ____.

________ ___ is used to reduce light refraction. It is required for high magnification objective lens (100x)

A

refractive index
objective lens
immersion oil

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13
Q

Why do 100x objective lens need immersion oil?

A

High magnification lens are usually SMALLER in sizes/diameter in order to increase resolution.

Smaller lens collect fewer lights.

Therefore, you need immersion oil to REDUCE LIGHT REFRACTION in order to collect enough light.

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14
Q

How will a sample look if you forget to use immersion oil with the 100x lens?

A

Blurry or darker

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15
Q

Compound (Brightfield) Light Microscope:

-____ ______ are visible against a bright background
-light reflected off the specimen does not enter the ________ ____

-___ _______ in unstained specimens

A

dark objects
objective lens
low contrast

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16
Q

Darkfield Microscopy:

-_____ _______ are visible against a dark background

-_______ ____ placed in condenser

  • only light reflected ___ ___ ______ enters the objective lens
A

light objects
opaque disk
off the specimen

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17
Q

Phase-Contrast Microscopy:

-allows examination of ______ ______ and ______ ____ ________ without ______

  • Use _______ ________ and _________ ____ to bring together two sets of lights rays, direct rays, and diffracted rays to form an image with better ______
A

living organisms
internal cell structures
staining annular diaphragm
diffraction plate
contrast

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18
Q

Differential Interference Contrast (DIC) Microscopy:

  • similar to phase-contrast that can reveal some ______ ______ without ______
  • uses ___ _____ _____ and ______ to split light beams, giving more ______ and _____ to the specimen
A

internal structures
staining
two light beams
prisms
contrast
color

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19
Q

Fluorescence Microscopy:

-Uses _____ ________ light with ______ _____ (ex. UV/violet/blue)

-Fluorescent substances absorb higher energy light and emit _____ ________ (like red/yellow/green) light with lower energy

-In most cases, cells need to be stained with fluorescent dyes (___________)

-Fluorescence-antibody technique (immunofluorescence): use ________ conjugated with fluorochromes to detect _______ (proteins or polysaccharides) of cells

-samples can be ____ cells or _____ cells (dead cells)

A

short wavelength; higher energy
longer wavelength
fluorochromes
antibodies; antigen
live; fixed

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20
Q

Fluorescence labeling allows us to detect presence/localization/quantity of ___________ (proteins or polysaccharides) withing a cell or on the surface of a cell

A

macromolecules

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21
Q

Fluorescent treponemal antibody absorption (FTA-ABS) test using fluorescence microscopy:
Cells may be stained with fluorescent dyes (___________) or _______ conjugated with fluorochromes

A

fluorochromes; antibodies

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22
Q

Confocal Microscopy:

  • Cells are stained with ________ dyes or ________ conjugated with fluorochrome

-_____-_______ (ex. blue) light generate by a laser is used to excite a single ____ of a specimen

  • Each plane in a specimen is illuminated and a _____-_______ image is constructed with a computer
    -reduce _____ noise; better ______
A

fluorochrome; anitbodies
short-wavelength; plane
three-dimensional
light; contrast

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23
Q

Electron Microscopy: *expensive

-uses ______ instead of light

-the ______ wavelength of electrons (100,000x smaller than visible lights) gives greater resolution

-used for images too small to be seen with light microscopes, such as ______

-a beam of electrons passes through ultrathin sections of a specimen, then through an _________ lens, then focused on a ______ lens

-Specimens may be stained with _____-_____ _____ for contrast

-Specimens are fixed and processed and in thin slices, meaning no ____ ____ imaging

Two types of electron microscopy?

A

electrons
shorter
viruses
electromagnetic; projector
heavy-metal salts
live cell

24
Q

Scanning Electron Microscopy:

-An electron gun produces a beam of electrons that _____ the surface of an entire specimen

-Secondary electrons emitted from the specimen produce a _____-______ image

-Magnifies objects 1,000 to 500,000x; of __ __

-doesn’t have to be a ____ layer

A

scans
three-dimensional
10 nm
thin

25
Q

Atomic Force Microscopy:

-similar to scanning electron microscope

-uses a metal-and-diamond ____ placed onto a specimen; movements are recorded

-produces _____-______ images at near atomic detail

A

probe
three-dimensional

26
Q

staining

A

coloring microorganisms with a dye that emphasizes certain structures
- chemical properties of the dye allow binding to different biomolecules that are unique to the microbes
- needs to be thin so the light can pass thru

27
Q

smear

A

a thin film of a material containing microorganisms spread over a slide

28
Q

-For many staining methods, microorganisms are _____ (attached) to the slide, which kills the microorganisms

-Simple fixation methods: ______ ___ _____ or ______ ____ ______

-Process of fixation also preserve features of ________ (ex. protein/polysaccharides/membrane)

A

fixed
flame the slide ; treated with methanol
biomolecules

29
Q
  • Stains consist of a positive and negative ion, one of which is colored (chromophore)
  • In a ____ dye. the chromophore is a cation- positively charged (crystal violet, methylene blue, malachite green, safranin)
  • In an _____ dye, the chromophore is an anion- negatively charged

-Staining the background instead of the cells is called ______ ______

A

basic
acidic
negative staining

30
Q

Basic dyes are more frequently used in staining bacteria, why is that?

A

Because bacteria are slightly negatively charged in neutral environment

31
Q

simple stain

A

use of a single basic dye
- highlights the entire microorganism to visualize cell shapes and structures
-a mordant (ex.Gram-iodine used in Gram staining) may be used to hold the stain or coat the specimen to enlarge it (helps dye stick to microbe surface)

32
Q

Differential stain

A

Used to distinguish between bacteria based on their unique features.

For examples: Gram stain and acid-fast stain

33
Q

-____-______ bacteria have thick, multiple layers of peptidoglycan

-____-______ bacteria have a thin peptidoglycan layer and an outer membrane

A

gram +
gram -

34
Q

Gram Staining procedure

A
  1. application of crystal violet (purple dye)
  2. application of iodine (mordant)
  3. alcohol wash (decolorization)
    *gram positive will remain
  4. application of safranin (counterstain)

*gram-positive bacteria are also stained with safranin, but showing purple/violet color from crystal violet dyes

35
Q

What will happen if you wash the samples with alcohol (decolorization step) too long on Gram positive bacteria?

What color will the Gram positive bacteria show after Gram staining is finished?

A

dye will be washed away

pink, everything pink

36
Q

acid-fast stain

A
  • binds only to bacteria that have a waxy material and mycolic acids in their cell walls, which is not decolorized by acid-alcohol
    -used for the identification of Mycobacterium and nocardia (both have mycolic acid so both will be stained)
37
Q

capsule stain, endospore stain, flagella stain

A

used to distinguish parts (unique structures) of microorganisms

38
Q

capsule (glycocalyx)

A

a thick layer of polysaccharides and polypeptides coating on certain bacteria

39
Q

endospore

A

a resting structure containing compact DNA genome that can resist to environmental stresses (ex. heat, UV, desiccation)

40
Q

flagella

A

a long filament-like structure that can rotate to provide motility for bacteria

41
Q

negative staining for capsules

A
  • capsules are a gelatinous covering that do not accept most dyes

-suspension of India ink or Nigrosine contrasts the background with the capsule, which appears as a white halo around the cell

-the bacterial cells are stained with a counter/simple stain, safranin, and show pink color

42
Q

endospore staining

A
  • endospores are resistant, dormant structures inside some cells that cannot be stained by ordinary methods

-Primary stain: Malachite green, usually with heat. Heating helps penetration of malachite green into the endospores

-decolorize cells: water

-counterstain: safranin (to stain bacterial cell body)

  • spores appear green within red or pink bacterial cells (vegetative cell)
43
Q

flagella staining

A
  • flagella are structures of locomotion
  • assist bacteria moving in the environment for nutrients; promote bacteria spreading which can help infection
  • uses Carbolfuchsin (dye) and mordant to thicken appearance of flagella, making them visible under the light microscope
44
Q

Numbers of flagella or location on the bacteria can help determine ______ _____

ex. Legionella pneumophila has single flagellum at one cell pole; Salmonella enterica typhi has multiple flagella surrounding the bacterium

A

bacterial species

45
Q

Which type of stain is most useful in helping clinicians to decide which antibiotic to prescribe for a bacterial infection?

A

gram stain

46
Q

The limit of resolution of the compound microscope illuminated with visible light is approximately 0.2 μm

A

true

47
Q

Which microscope takes advantage of differences in the refractive indexes of cell structures?

A

phase-contrast

48
Q

The capsules and flagella of bacteria can be observed in gram-stained smears

A

false

gram stain cannot help with any of these

49
Q

What mechanisms can a cell transport a substance from a lower to a higher concentration?

A

active transport

50
Q

which is NOT produced during the Krebs cycle?

A

NAPDH

51
Q

In general, ATP is generated in catabolic pathways and expended in anabolic pathways.

A

True

52
Q

Where would you expect to find electron transport chains in a prokaryote?

A

Along plasma membrane

53
Q

The process of generating ATP using a proton gradient is referred to

A

Chemiosmosis

54
Q

Electron transport chain
which compounds provide electrons to the system?

A

NADH and FADH2

55
Q

A bacterium that only possesses the ability to ferment obtains energy by

A

glycolysis only