chapter 13- mechanisms of microbial evolution Flashcards

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1
Q

What is evolution?

A

change in allele frequencies over time

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2
Q

Mutation

A

random changes in DNA

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3
Q

What are the 4 types of mutations?

A

substitutions, deletions, insertions and duplications

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4
Q

What does recombination mean?

A

breaking and rejoining of DNA segments

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5
Q

What can recombination achieve?

A
  1. reassortment of genetic material
  2. can be homologous (requires similar segments) or non-homologous (high similarity)
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6
Q

Evolutionary selection

A

defined by ability of organism to produce progeny and contribute to genetic makeup (fitness)

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7
Q

What are the 2 different types of mutations?

A
  1. deleterious: mutations decrease fitness (get removed by natural selection)
  2. beneficial: mutations increase fitness (favoured by natural selection)
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8
Q

Genetic drift

A

random process causing gene frequencies to change overtime resulting in evolution

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9
Q

What is experimental evolution?

A

using experiments with microbes to investigate evolutionary process

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10
Q

Why are microbes used?

A

they grow very rapidly and can be preserved through freezing.

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11
Q

What is an example of a long term experimental evolution?

A

E. Coli
- running since 1988, grown aerobically, within defined media (glucose and citrate)
- dramatic increase in fitness, then slowed
- strains evolved, marked with natural marked
- E. Coli couldn’t utilize citrate, throughout time, mutations allowed that evolution to be possible.

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12
Q

Homologs

A

genes descend from common ancestral sequence

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13
Q

Orthologs

A

sequences have diverged due to a speciation event

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14
Q

Paralogs

A

homologous sequences share common ancestors due to gene duplication events

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15
Q

Gene families

A

groups of gene homologs.

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16
Q

What happens after gene deletions?

A
  • you can maintain a small size of microbial genome
  • metabolites become available in host cytoplasm
  • deletions removes biosynthetic genes
  • can increase fitness but promote interdependency
17
Q

What are the 3 mechanisms of horizontal gene transfer?

A

1- Transformation
2- Transduction
3- Conjuction

18
Q

Core genome

A

genes shared by all strains

19
Q

Pan genome

A

core genome + unshared genes

20
Q

Chromosomal islands

A

entire genetic pathway can be acquired through horizontal gene transfer

21
Q

Pathogenicity islands

A

genes associated with pathogenicity are clustered in blocks

22
Q

Phylogenetic trees

A

depicting evolutionary history

23
Q

Phenotypic

A

morphological / metabolic / physiological / chemical analysis

24
Q

Genotypic

A

genome analysis

25
Q

Phylogenetic

A

evolutionary analysis

26
Q

Synteny

A

order of genes