Chapter 13: Altering the Genetic Material: Mutation, DNA Repair, and Cancer Flashcards

1
Q

Define mutation.

13.1

A

a heritable change in the genetic material

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2
Q

T or F: New mutations are much more likely to be harmful than beneficial to the individual.

13.1

A

true

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2
Q

What are the two basic types of change that gene mutations can cause?

13.1

A

1) the base sequence within a gene can be changed
2) one or more base pairs can be added to or removed from a gene

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3
Q

What type of mutation is this?

A wild-type DNA sequence is 5’ -ACACGTTGAT- 3’.
It is converted to 5’ -ACACGTTAAT - 3’.

13.1

A

point mutation/base substitution; where G is replaced with A

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4
Q

Where must a mutation occur if its is to directly affect an amino acid sequence?

13.1

A

the coding region of a protein-encoding gene

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5
Q

There are 4 different types of effects that point mutations have on polypeptides. Name each one and briefly describe them.

BONUS: DRAW IT!

13.1

A
  1. Silent (causes no change)
  2. Missense (changes one amino acid in the polypeptide)
  3. Nonsense (changes a normal codon to a stop codon and shortens the polypeptide)
  4. Frameshift (produces a different amino acid sequence)
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6
Q

A point mutation affects only a single ____ pair within the DNA.

13.1

A

base

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7
Q

____ and ________ mutations can cause more dramatic changes to a polypeptide sequence than ________ mutations.

13.1

A

nonsense and frameshift; missense

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8
Q

T or F: Mutations within noncoding sequences can affect gene expression.

13.1

A

true

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9
Q

What effects do the following sequences have on mutation?
Promoter, transcriptionl regulatory element, splice sites, translational regulatory element, and intergenic region.

13.1

A

Promoter: increase or decrease the rate of transcription
Transcriptional RE: alter the regulation of transcription
Splice sites: alter ability of pre-mRNA to be properly spliced
Translational RE: alter the ability of mRNA to be translationally regulated
Intergenic region: not as likely to affect gene expression

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10
Q

Define a germ-line mutation.

13.1

A

a mutation that occurs in a germ-line cell, which gives rise to gametes; can be passed from parent to offspring

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11
Q

Consider a germ-line mutation that occurs in a sperm which fertilizes a normal egg to produce a zygote. In the individual that results from this zygote ____% of the cells will contain the mutation, and ____ % of the gametes produced by that individual will carry the mutation.

13.1

A

100; 50

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12
Q

T or F: A somatic mutation is transmitted to the offspring of the individual that carries it.

13.1

A

false; it is NOT

germ-line mutations ARE passed from parent to offspring

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13
Q

T or F: Germ-line mutations affect the whole organism, while somatic mutations affect a limited area of the body.

13.1

A

true

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14
Q

Bacterial colonies can be transferred from a master plate to secondary plates in the same configuration using a transferring agent such as a sterile velevet cloth. What is this technique know as?

13.2

A

replica plating

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15
Q

Which two scientists are responsible for using replica plating to show that mutations are random events?

13.2

A

Joshua and Esther Lederberg

16
Q

The results of the replica plating experiment performed by the Lederbergs supported their hypothesis that mutations are random events by demonstrating what?

13.2

A

The T1 mutation developed in the original population before exposure to bateriophages.

17
Q

What type of mutation results from abnormalities that naturally occur during biological processes?

13.2

A

spontaneous mutations

18
Q

Define induced mutations.

13.2

A

Mutations that are caused by environmental agents that enter the cell and alter the structure of DNA.

19
Q

The technique of replica plating allows for the:

13.2

A

identification of transformed cells

20
Q

How do the effects of germ-line mutations in a parent progress over the lifetime of an offspring receiving that mutation?

13.2

A

All of the cells of the individual’s body, but only half of the gametes produced by that individual will carry the mutation.

21
Q

What are two types of physical mutagens?

13.2

A

X-rays and UV light

22
Q

What are the three outcomes that are caused by chemical mutagens?

13.2

A

1) covalent modification (ex: nitrous acid deaminates bases)
2) base analogues (ex: 5-Bromouracil and 2-Aminopurine)
3) distortion of the DNA double helix (ex: benzo[a]pyrene

23
Q

Define ioning and nonionizing radiation.

13.2

A

Ioning: Radiation that is short-wavelength and high energy, and often leads to base deletions and breaks in one or both DNA strands
Nonionizing: Radiation that has a longer wavelength and lower energy, which penetrates the skin and often leads to thymine dimers

24
What are thymine dimers? ## Footnote 13.2
In DNA, a type of pyrimidine dimer that can cause a mutation; a site where two adjacent thymine bases become covalently crosslinked to each other
25
Which test was developed in the 1970s, to evaluate the ability of a substance to cause muations? ## Footnote 13.2
the Ames test
26
Who was the Ames test developed by? ## Footnote 13.2
Bruce Ames
27
T or F: UV lights are ionizing, whereas X-ray and gamma rays are forms of nonionizing radiation. ## Footnote 13.2
false; the opposite
28
T or F: All living things possess mechanisms allowing them to minimize mutation. ## Footnote 13.3
true
29
Exposure to chemical mutagens can lead to mutations because chemical mutagens can cause: | Hint: 2 answers ## Footnote 13.2
insertions and deletions during DNA replication and inappropriate base pairing during DNA replication
30
What is NER? Does it occur in prokaryotes? What about eukaryotes?
NER stands for nucleotide excision repair, and it is the most common DNA repair system found in all eukaryotes and prokaryotes
31
A compound is subjected to the Ames test to evaluate its ability to cause mutation. If the subsance is a mutagen, what results are expected? ## Footnote 13.2
there will be more bacterial colonies on the plate exposed to the mutagen than on the control plate
32
Identify the function of each protein that is involved in nucelotide excision repair in E.Coli. (UvrC, UvrD, DNA polymerase, DNA ligase, UvrA/UvrB complex) | *BONUS: DRAW IT! :)* ## Footnote 13.3
UvrC: cuts DNA on both sides of the damaged site UvrD: removes the damaged region DNA polymerase: synthesizes new DNA to fill in the gap DNA ligase: seals newly synthesized DNA to the original strand UvrA/UvrB complex: identifies a damaged site
33
Compare base analogs to DNA bases. ## Footnote 13.2
base analog structure is similar to DNA bases but don't pair correctly and cause errors in DNA replication (ex: 5-Bromouracil and 2-Aminopurine)
34
What is the purpose of the Ames test? ## Footnote 13.2
it's an experimental procedure that tests whether substances cause a mutation (make histidine); uses *salmonella typhimurium* that cannot synthesize histidine
35
Can mutagens cause mutations by altering the genetic code of an organism? ## Footnote 13.2
No; mutagens can cause mutations by chemically alterting the DNA molecule and distrupting the replication of DNA.