Cell Signalling Flashcards
What are ligands?
Signalling molecules
What do ligands do?
They bind onto specific receptors (other molecules)
How does a message carried by the ligand work?
Leads to a change in the cell in the activity of a gene, or induce a process like cell division.
What does cell to cell signalling involve?
Transmission of a signal from a sending cell to receiving cell
What are the basic 4 categories of chemical signalling?
Paracrine
Autocrine
Endocrine
Signalling by direct contact
What is paracrine signalling?
Cell communication over a relatively short distance
How does paracrine signalling work?
Cells that are near one another communicate through release of chemical messengers;
Ligands can diffuse through the space between cells
When does paracrine normally take place?
Used in different tissues and contexts, important in development (spinal cord development)
What is the subtype of paracrine signalling?
Synaptic
What is synaptic signalling?
Synapse process, the junction between two nerve cells where signal transmission occurs.
Ligands are called neurotransmitters which quickly cross small gap between nerve cells. When they bind onto the receptor, chemical change inside cell happens (often opening ion channel)
What is autocrine signalling?
Cell signals itself releasing a ligand that binds to its own receptor
Where can you find autocrine signalling?
During development, helping cells take on and reinforce heir correct identities.
Important in cancer (key role of metastasis, spread of cancer from original sight)
What is endocrine signalling?
Cells need to transmit signal over a long distance.
Which system does endocrine signalling work very closely with?
Cardiovascular system
How does endocrine signalling work?
In long distance endocrine signalling, signals are produced by specialised cells and released into the bloodstream which carries them to target cells in distant parts of the body.
What are these signals called which gets made at one place and travel a long distance through blood?
Hormones
In humans, where are hormones released from?
endocrine glands like thyroid, hypothalamus, pituitary, pancreas, and gonads
What is signalling through cell to cell contact?
Gap junctions, tiny channels which allow small signalling molecules called intracellular mediators to diffuse between the two cells.
How does binding of a ligand to a receptor work?
Specific ligands bind to specific matching receptor which changes the shape of the receptor allowing transmit of a signal or produce a change inside the cell.
What are the two categories of receptors?
Intracellular (membrane bound) receptor
Cell surface receptor
What are intracellular receptors?
Found inside the cell in the cytoplasm or nucleus
What are cell surface receptors?
Found in the plasma membrane anchored proteins.
Does ligand need to cross the plasma membrane for cell surface receptors?
No
What are the 3 domains of cell surface receptors?
Extracellular ligand binding domain
Hydrophobic domain
Intracellular domain
What are the three main kinds of cell surface receptors?
Ion gated channels
GPCR (G protein coupled receptor)
RTK (recpetor tyrosine kinase)
What are ligand gated channels?
Channels which open in response of binding of a ligand
How do channels form?
Receptor has a membrane spanning region of hydrophillic (love water) in the middle of the channel.
What does the channel do?
Lets ions cross the membrane without through hydrophobic core of the phospholipid bilayer
What is GCPRs?
Large family of cell surface receptors with common structure and method of signalling.
What do GCPRs do?
Transmit signals INSIDE the cell through a type of protein called G protein.
Example of GCPRs use is?
Through scent receptors
When a ligand is NOT present, the GCPR…
Waits at the plasma membrane in an inactive state.
Where do the G proteins bind to?
Onto the GPCR but bind to GTP nucleotide.
GTP breaks down to form…
GDP
When a G protein links to GTP is active/inactive?
Active
When a G protein links to GDP is active/inactive?
Inactive
Describe how GCPRs work
Unbound GCPR is unbound and therefore inactive
G protein is bound to GDP and enzyme is inactive too.
Signal binds to receptor and G protein binds to GTP (turns on) but enzyme is still inactive.
Activated G protein + GTP dissociates, receptor activates the enzyme to do a cellular response
G protein has GTPase activity promoting release from enzyme reverting back to resting state.
What is the first step of cell communication?
Reception of signal
First messenger (signal protein) binds to protein receptor
Conformational change to the receptor because of the binding
How does RTK work?
At rest, RTK are inactive monomers
Signal molecule (growth factor) binds to RTK, dimerises in membrane (separate monomers stick together now like magnets)
TK of one monomer phosphorylates the other monomer activating both monomers.
Each activated RTK binds to activate specific proteins and anzymes
Ligand gated ion channels how they work?
At rest, lgand unbound and gate is closed
Ligand is the signalling molecule and gate opens once it binds onto the channel allowing flow of ions.
Ligand comes of and gate closes back to resting state
Cytosollic or nuclear recpetors are what relationship with water and why?
Hyrdrophilic as they need to pass the hydrophillic plasma membrane which was made out of phospholipids, lipid soluable or small
What two types of cells are there?
Prokaryotic
Eukaryotic
What characteristics does each cell have?
DNA (heritable material) RNA (messenger intermediate) Proteins (as the workers) ATP (energy source) Has a relationship between DNA, RNA and proteins
What are membrane-bound organelles?
Organelles protected by a single or double plasma membrane.
What is the difference between the shape of DNA in eukaryote and prokaryotes?
EU - Linear double helix
PR - Circular
What do they eu and pro have in common?
Have cytoplasm enclosing them both
In pro, where is DNA stored?
No nucleus so it’s in nuclear area (nucleoid)
Structure of phospholipids are
Double layer of fats called phospholipids
WHat is a phospholipid?
Each layer made up of a hydrophilic head and hydrophobic tail with proteins embedded in it
What is the function of the plasma membrane?
as a barrier to control entry and exit into the cell semipermeable
What 3 forms of the protein can be found in the plasma membrane?
Transmembrane
Peripheral membrane
Glycoprotein
Structure of phospholipids which make up the plasma membrane is?
Heads out tails in
What is the function of embedded proteins?
mediate movement of hydrophilic substances and intercellular communication
What is the structure of transmembrane protein?
Spans the entire membrane, integral protein
What are the 6 different functions of plasma membrane?
Transport Enzyme activity Cell-cell recognition signalling Signal transduction Intercellular joining Attachment to the cytoskeleton and ECM
What is an important feature of the plasma membrane?
We have to understand the fluidity of the plasma membrane
Name the organelles with a double lipid bilayer
Nucleus
Mitochondria
Describe the endomembrane system
Transport vesicle from the rough ER is in a transport vesicle which enters the golgi apparatus to modify entering in the cis face and exiting through the trans face and is either secrete out of the cytosol. secreted for membrane renewal or enzyme for cytosol
How is DNA organised and coiled within the nucleus to form a chromosome?
8 histone proteins make a nucelosome where the DNA is wrapped around the nucelosome 2x (10nm)
During early mitosis, chromatin condense to chromatin fibre which is 30nm
Fibres condense into loops which are 300nm
Finally form chromosomes held centrally at the centromere 1400nm
DNA can be divided into genes located along teh chromosome (genses codes for proteins via transcription and translation)
Describe what DNA is
DNA is a double helix polymer made of many monomers. These monomers are called nucleotides/
What does a nucelotide contain?
A phosphate group
Nitrogenous Base
Sugar (deoxyribose)
How is the DNA stabilsied? What bonds
Hydrogen bonds (at the bases attachment) and phosphodiester bonds at the chain
What would go wrong if there was an issue with lysosome?
Loss of autophagy, autolysis + cellular digestion
What would go wrong if there was an issue with mitochondira?
RIP powerhouse of the cell
What would go wrong if there was an issue with golgi appararatus
Inability to modify MEMBRANE, ORGANELLE and SECRETED PROTEINS + effect on lysosomes
What would go wrong if there was an issue with smooth ER?
Can’t produce carbohydrates and lipids + tissue specific effects i.e. loss of detoxifying enzymes in the liver/loss of calcium stores in muscle
Is a glucose a source of energy?
no it isnt the SOLE source of energy
What do complex molecules do?
The store energy
What are the steps for gene expression?
DNA (transcription)
Pre-mRNA (mRNA processing)
Mature mRNA (transition)
Protein (folding post transition modifications)
What are the sub types of transcription?
Initiation
Elongation
Termination
What are the steps of mRNA maturation?
5’ cap
Poly A tail
mRNA splicing
What are the subtypes of translation?
Initiation
Elongation
Termination
What is happening in transcription?
RNA copy segment of DNA
What is happening in maturation of mRNA?
Also called mRNA processing
What is happening in translation?
Protein production using mRNA template
What is the first step of initiation in transcription?
DNA is double stranded (5 to 3 on one strand and 3 - 5 on the other, only ONE will be the template strand)
What is the 2step of initiation in transcription?
Upstream (3 to 5) of the gene. is the promoter which usually includes the TATA box with sequence 5- TATAAAA 3)
What is the 3step of initiation in transcription?
Transcription factors bind to the promoter specifiaclly to the TATA box
What is the 4step of initiation in transcription?
RNA II polymerase is then able to bind to the transcription factors and the START CODON on the DNA
What is the 5step of initiation in transcription?
RNA II polymerase undertakes transcription moving from 3 to 5 along template strand and manufacturing the mRNA in 5 to 4 direction
what is the 6step of initiation in transcription?
Transcription includes both translate and non translated sequences of
Which direction do proteins work in?
5 to 3 direction
What is the nucleus lined by?
Nuclear lamina
How do substances enter and exit the nucleus?
through the nuclear pore
What is the primary function of the nucleus?
House and store DNA
What is the other function of the nucleus?
rRNA and ribosome production
What is the cytoplasm?
Any part of the cell interior to the plasma membrane
What is the cytoplasm surrounded by?
Cytosol a jelly-like substance
What can be found in the cytoplasm?
Nucleus Ribosomes Lysosomes Mitochondria ER (smooth and rough) Golgi complex Cytoskeleton