carbohydrates Flashcards

1
Q

Describe the function and process of glycolysis.

A
  • Catabolic pathway that saves some potential energy from glucose/G-6-P by forming ATP through substrate level phosphorylation
  • Essentially the only way that energy can be made from fuel molecules when cells lack O2 (exercising muscle) or mitochondria (RBCs)
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2
Q

glucose has a ______ ending

A

OH (linear)

COOH at beginning

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3
Q

galactose has a _______ ending

A

CH2OH (linear)

COOH at beginning

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4
Q

fructose has a ______

A

singular O (pentagon shaped)

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5
Q

Disaccharides are formed from

A

monomers that are linked by glycosidic bonds.

A glycosidic bond is a type of covalent bond formed when hydroxyl group of one monosaccharide reacts with anomeric carbon of another monosaccharide

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6
Q

What’s an anomeric carbon?

A

Different anomers are mirror images of each other (left- and right-handed forms)
It is carbon #1 on the glucose residue
It stabilises the structure of glucose
Is the only residue that can be oxidised

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7
Q

Monosaccharides

A

cannot be hydrolysed into a simpler sugar.

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8
Q

3 hexoses in humans:

A
  • glucose (glc)
  • galactose (gal)
  • fructose (fru)
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9
Q

3 disaccharides in humans:

A
  • Maltose
  • Lactose
  • Sucrose
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10
Q

Maltose and diets

A
  • Not much in our diets
  • Breakdown product of starch
  • Found in beer (starch of barley)
  • Baby foods use it as natural sweetner
  • Anomeric C1 available and so can be oxidised - reducing sugar
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11
Q

Lactose and diets

A
  • Mainly found in milk
  • Formed from a glycosidic (covalent) bond between galactose and glucose
  • Anomeric C1 available and so can be oxidised - reducing sugar
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12
Q

Sucrose and diets

A
  • Common (table) sugar
  • Only made by plants
  • Approx. 25% of dietary carbohydrate
  • Sweetener in most processed food
  • No anomeric C1 and so cannot be oxidised - non-reducing sugar
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13
Q

Polysaccharides and types

A

Polymers of medium to high molecular weight.

Homopolysaccharides
- Single monomeric species
Heteropolysaccharides
- Have two or more monomer species

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14
Q

how can polysaccharides be distinguished from each other

A
  • Identity of their recurring monosaccharide units
  • Length of their chains
  • Types of bonds linking monosaccharide units
  • Amount of branching they exhibit
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15
Q

Starch and types

A

Has many non-reducing ends and very few reducing ends

Contains two types of glucose polymer:

  • Amylose (20-25% of starch)
  • Amylopectin (75-80% of starch)
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16
Q

Amylose features

A
  • D-glucose residues in (α1→4) linkage
  • Can have thousands of glucose residues
  • Form alpha helices

Account for 20-25% of starch

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17
Q

1,4 glycosidic bond is formed between

A

a hydroxyl oxygen atom on carbon-4 on one sugar (monosaccharide) and the α-anomeric form of C-1 on the other (monosaccharide).
Formed due to condensation reaction.

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18
Q

Amylopectin features

A
  • Similar structure as amylose but branched
  • Glycosidic (α1→4) bonds join glucose in the chains but branches (linkages) are (α1→6) and occur every 24 – 30 residues
  • Form alpha helices

Account for 75-80% of starch

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19
Q

Glycogen in humans

A
  • Animal cells use a similar strategy as plants to store glucose
  • Polymer of glucose (α1→4) linked sub-units with (α1→6) branches every 8 to 12 residues
  • This makes glycogen more extensively branched than starch
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20
Q

90% of glycogen is in:

A

Liver
- acts to replenish blood glucose when fasting

Skeletal muscle
- catabolism produces ATP for contraction

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21
Q

glycogen structure

A
  • giant ball with protein in the middle
  • surrounded by mitochondrion so we can use it for energy when needed
  • highly packed glucose
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22
Q

Why store glucose in polymers?

A
  • Compactness
  • Amylopectin and glycogen have many non-reducing ends
  • The polymers form hydrated gels and are not really “in solution”
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23
Q

many non reducing ends in glycogen and amylopectin allows them to:

A
  • Be readily synthesised and degraded to and from monomers

- Thus speeds up the formation or degradation

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24
Q

As the polymers form hydrated gels and therefore are not really in solution this means:

A
  • They are osmotically inactive
  • If free glucose were in the cells then glucose would leave cell
  • Either glucose would move out of the cell down the concentration gradient or the cell would use huge amounts of energy keeping it in the cell
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25
Glycoproteins are
- Proteins that have carbohydrates covalently attached - Most extracellular eukaryotic proteins have associated carbohydrate molecules - Carbohydrate content varies between 1-80% by mass
26
Carbohydrates attached to proteins may:
- Increases the proteins solubility - Influence protein folding and conformation - Protect it from degradation - Act as communication between cells
27
Glycosaminoglycans (GAGs) features
- Less commonly called mucopolysaccharides - Found in mucus and also synovial fluid around the joints - Un-branched polymers made from repeating units of hexuronic acid and an amino-sugar, which alternate through the chains - contain groups NH, OSO3-, COO- eg- hylaluronate, heparin, keratan sulphate
28
Proteoglycans features
- Formed from GAGs covalently attaching to proteins - Macromolecules found on the surface of cells or in between cells in the extracellular matrix - Form part of many connective tissues in the body - COO- goes inside cell EG- Syndecan, Glypican
29
Glycoproteins features
- Very similar to proteoglycans - Usually found on the outer plasma membrane and extra cellular matrix, - Also in blood and within cells in the secretory system (Golgi complex, secretory granules) - Some cytoplasmic and nuclear proteins are also glycoproteins
30
Mucopolysaccharidoses is
- Group of genetic disorders caused by the absence or malfunction of enzymes required for the breakdown of glycosaminoglycans - Over time the glycosoaminoglycans build up in connective tissue, blood and other cells of the body - This build up damages cellular architecture and function
31
Mucopolysaccharidoses can cause
- Severe dementia - Problems with the heart and any other endothelial structure as the glycosaminoglycans build up between the endothelial cells - Bones tend to be stunted and joints will be inflammed and become severely damaged - Hurler, Scheie, Hunter, Sanfilippo syndromes are all examples of mucopolysaccharidoses
32
Hurler syndrome causes
- Severe developmental defects: - Stop developing at around 4 years - Death at around 10 years old - Clouding and degradation of the cornea - Arterial wall thickening - Dementia caused by, amongst other things: - Build up of CSF - Enlarged ventricular spaces Experimental therapies currently include: - Gene therapy - Enzyme replacement therapies
33
Carbohydrates in our diet
Starch - Cereals, potatoes, rice Glycogen - Meat (however when the animal dies enzyme activity in tissue degrades much of the glycogen stores) Cellulose and hemicellulose - Plant cell walls – we don’t digest this Oligosaccharides containing (α1→6) linked galactose - Peas, beans, lentils – not digested Lactose, sucrose, maltose - Milk, table sugar, beer Glucose, fructose - Fruit, honey
34
Digestion of carbohydrates
Mouth: - Salivary amylase hydrolyses (α1→4) bonds of starch Stomach: - No carbohydrate digestion Duodenum (first part of the small intestine): - Pancreatic amylase works as in mouth Jejunum (second part of small intestine): - Final digestion by mucosal cell-surface enzymes: - Isomaltase – hydrolyses (α1→6) bonds - Glucoamylase – removes Glc sequentially from non-reducing ends - Sucrase – hydrolyses sucrose - Lactase – hydrolyses lactose Main products are – Glc, Gal, Fru
35
Absorption of glucose
- Glucose is absorbed through an indirect ATP-powered process - ATP-driven Na+ pump maintains low cellular [Na+], so glucose can continually be moved into the epithelial cells - This system continues to work even if glucose has to be moved into the epithelial cells against it’s concentration gradient (i.e. When blood glucose is high)
36
Absorption of galactose
Galactose has a similar mode of absorption as glucose, utilising gradients to facilitate it’s transport
37
Absorption of fructose
Fructose is slightly different, - Binds to the channel protein GLUT5 - Simply moves down it’s concentration gradient (high in gut lumen, low in blood)
38
Cellulose and hemicellulose
Cannot be digested by the gut, but they do have a use - Increase faecal bulk and decrease transit time Lack of oligosaccharides in the diet can lead to poor health - Many western diets Polymers are broken down by gut bacteria - Yielding CH4 (methane) and H2 - Beans will also have the same effect!
39
Disaccharidase deficiencies
``` Deficiencies may be genetic Can result from, - Severe intestinal infection - Other inflammation of the gut lining - Drugs injuring the gut wall - Surgical removal of the intestine ``` Characterised by abdominal distension (enlargement) and cramps
40
Disaccharidase deficiencies diagnosis requires
enzyme tests of intestinal secretions. | Usually checking for lactase, maltase or sucrase activity
41
Lactose intolerance
- Most common disaccharidase deficiency - Most humans lose lactase activity after weaning - Western whites retain lactase activity into adulthood - Theory that this comes from cattle domestication 100,000 years ago
42
If lactase is lacking, then ingestion of milk will give disaccharidase deficiency symptoms. This happens for 2 reasons:
- Undigested lactose is broken down by gut bacteria causing gas build up and irritant acids - Lactose is osmotically active, thus drawing water from the gut into the lumen causing diarrhoea Symptoms can be avoided by, - Avoiding milk products (many non-western diets do) - Using milk products treated with fungal lactase - Supplementing diet with lactase
43
Lactose intolerance facts
- Most common disaccharidase deficiency - Most humans lose lactase activity after weaning - Western whites retain lactase activity into adulthood - Theory that this comes from cattle domestication 100,000 years ago
44
If lactase is lacking, then ingestion of milk will give disaccharidase deficiency symptoms. This happens for 2 reasons:
- Undigested lactose is broken down by gut bacteria causing gas build up and irritant acids - Lactose is osmotically active, thus drawing water from the gut into the lumen causing diarrhoea
45
Lactose intolerance symptoms can be avoided by:
- Avoiding milk products (many non-western diets do) - Using milk products treated with fungal lactase - Supplementing diet with lactase
46
Fate of absorbed Glucose
Glucose diffuses through the intestinal epithelium cells into the portal blood and on to the liver Glucose is immediately phosphorylated into glucose 6-phosphate by the hepatocytes (or any other cell glucose enters) Glucose 6-phosphate cannot diffuse out of the cell because GLUT transporters won’t recognise it - This effectively traps the glucose in the cell Enzyme catalyst, - Glucokinase (liver) - Hexokinase (other tissues)
47
Glucokinase Km (affinity for substrate) and Vmax (efficiency of enzyme)
High Vmax so low affinity for substrate High Vmax so very efficient enzyme this is the opposite for hexokinase
48
When blood glucose is normal
the liver doesn’t “grab” all of the glucose, so other tissues have it. Hexokinase does most of the work
49
When blood glucose is high (after meal)
liver “grabs” the Glucose. Hexokinase is also working abut glucokinase takes care of all the extra glucose.
50
High glucokinase Vmax means
it can phosphorylate all that glucose quickly, thus most absorbed glucose is trapped in the liver
51
Hexokinase low Km means
even at low glucose tissues can “grab” glucose effectively
52
Hexokinase low Vmax means
tissues are “easily satisfied”, so don’t keep “grabbing” glucose
53
When blood glucose level falls, the liver
converts
54
When blood glucose level falls, the liver
converts glycogen to glucose-6-phosphate. glucose-6-phosphate is broken down into glucose by glucose-6-phosphotase. This process is called glycogenolysis.
55
When blood glucose level falls, the skeletal muscles
there is no Glucose-6-Phosphate and so are not directly available for blood glucose. When doing exercise, glycogen is converted to G6P and through glycolysis this is converted to lactate. the lactate is then converted into blood sugar in the liver
56
Synthesis of glycogen (Step 1)
- Glycogen does not form directly from Glucose monomers - Glycogenin begins the process by covalently binding Glc from uracil-diphosphate (UDP)-glucose to form chains of approx. 8 Glc residues - Then glycogen synthase takes over and extends the Glc chains
57
Synthesis of glycogen (Step 1)
- Glycogen does not form directly from Glucose monomers - Glycogenin begins the process by covalently binding glucose from uracil-diphosphate (UDP)-glucose to form chains of approx. 8 glucose residues - Then glycogen synthase takes over and extends the glucose chains
58
Synthesis of glycogen (Step 2)
The chains formed by glycogen synthase are then broken by glycogen-branching enzyme and re-attached via (α1→6) bonds to give branch points
59
Degradation (Mobilisation) of glycogen
- Glucose monomers are removed one at a time from the non-reducing ends as G-1-P - Following removal of terminal Glucose residues to release G-1-P, by glycogen phosphorylase, Glucose near the branch is removed in a 2-step process by de-branching enzyme - Transferase activity of de-branching enzyme removes a set of 3 Glucose residues and attaches them to the nearest non-reducing end via a (α1→4) bond - Glucosidase activity then removes the final Glucose by breaking a (α1→6) linkage to release free Glucose - This leaves an unbranched chain, which can be further degraded or built upon as needed
60
von Gierke’s disease and symptoms
Liver (and kidney, intestine) glucose 6-phosphatase deficiency Symptoms: - high [liver glycogen] – maintains it’s normal structure - low [blood Glc] – fasting hypoglycaemia - This is because glycogen cannot be used as an energy source – all Glc must come from dietary carbohydrate - high [blood lactate] – lacticacidaemia - Because the lactate produced by skeletal muscle cannot be reconverted to Glc in the liver (this process requires glucose 6-phosphatase – see Cori cycle lectures)
61
von Gierke’s treatment
Treatment: - Regular carbohydrate feeding – little and often - Every 3-4 hours throughout the day and night - Can be administered through a nasogastric tube and pump, but sudden death has occurred when the pump fails or the tube disconnects
62
McArdle’s disease and symptoms
Skeletal muscle phosphorylase deficiency Symptoms: - High [muscle glycogen] – maintains it’s correct structure - Weakness and cramps after exercise - No increase in [blood glucose] after exercise Most symptoms are not apparent in resting state, when muscles will use other energy sources (Glc and fatty acids from the blood) Usually becomes apparent in 20-30 year olds - Children do suffer the disease but may remember pain during adolescence and childhood
63
McArdle’s Treatment:
- Avoid strenuous activity - Make use of your “second wind” - Exercise briefly (anaerobically), wait for the pain to subside, continue to exercise (aerobically using oxidative phosphorylation of fatty acids)
64
McArdle’s Treatment:
- Avoid strenuous activity - Make use of your “second wind” - Exercise briefly (anaerobically), wait for the pain to subside, continue to exercise (aerobically using oxidative phosphorylation of fatty acids)
65
Gene sequencing has revealed that glycolysis is an ancient process, conserved through organisms:
- evolved before atmospheric O2 was plentiful - occurs in cytosol – no complex organelles required It is therefore important to life and justifiably fills the central role in the metabolic pathways
66
Glycolysis has two phases:
For 1 Glucose passing through the preparatory phase: - 2 molecules of G-3-P formed to enter the payoff phase For each Glucose, 2 ATP are used in the preparatory phase and 4 ATP gained in the payoff phase Imagine a car – it won’t work even with all of the petrol it contains unless it has a battery (2 ATP’s act as this initial energy to “kick-start” the glycolysis pathway) Thus glycolysis gives a net gain of 2 ATP (and NADH) per Glc molecule
67
1) Phosphorylation of glucose
Catalyst – hexokinase Uses 1 ATP ΔG = -16.7 kJ/mol – essentially irreversible
68
2) Conversion of G-6-P to F-6-P
Catalyst – phosphohexose isomerase | ΔG = 1.7 kJ/mol – proceeds either way due to low free energy
69
Glycolysis: | 1) Phosphorylation of glucose
Catalyst – hexokinase Uses 1 ATP ΔG = -16.7 kJ/mol – essentially irreversible
70
Glycolysis: | 2) Conversion of G-6-P to F-6-P
Catalyst – phosphohexose isomerase | ΔG = 1.7 kJ/mol – proceeds either way due to low free energy
71
Glycolysis: | 3) Phosphorylation of F-6-P to F-1,6-bisP
Catalyst – phosphofructokinase-1 (PFK-1) Uses 1 ATP ΔG = -14.2 kJ/mol – essentially irreversible 1st “committed” step of glycolysis, because G-6-P and F-6-P can be used in other pathways, but F-1,6-bisP is solely destined for glycolysis
72
Glycolysis: | 4) Cleavage of F-1,6-bisP
Catalyst – fructose 1,6-bisphosphate aldolase (or aldolase for short) ΔG = 23.8 kJ/mol – under cellular conditions the actual free energy change is small so the reaction is readily reversible ``` This is the “splitting” part of glycolysis One Glucose (6 C’s) is converted to two different 3C triose sugars ```
73
Glycolysis: | 5) Interconversion of triose sugars
Catalyst – triose phosphate isomerase ΔG = 7.5 kJ/mol – low, so readily reversible reaction Only G-3-P can participate in glycolysis, so the other 3 C sugar produced (dihydroxyacetone phosphate) is rapidly converted to G-3-P, thus yielding two G-3-P molecules for every one Glucose
74
Glycolysis: | 6) Oxidation of G-3-P to 1,3-bisPG
Catalyst – glyceraldehyde 3-phosphate dehydrogenase *2 NADH’s are produced* ΔG = 6.3 kJ/mol – endergonic, but see later This is the first reaction in the “payoff” phase of glycolysis
75
Important terminology in glycolysis: | substrate level vs respiration linked
"substrate-level” requires soluble enzymes and chemical intermediates, “respiration-linked” involves membrane bound enzymes and gradients of protons
76
7) P transfer from 1,3-bisPG to ADP
Enzyme – phosphoglycerate kinase *2 ATP’s produced* ΔG = -18.5 kJ/mol – highly exergonic so spontaneous Steps 6 and 7 are an energy-coupled process, so the overall ΔG is -12.2 kJ/mol 1,3-bisPG is the reaction intermediate between this coupled process This is one of the substrate-level phosphorylation reactions in glycolysis (different than respiration-linked phosphorylation – see Citric Acid Cycle lectures)
77
8) Conversion of 3-PG to 2-PG
Catalyst – phosphoglycerate mutase | ΔG = 4.4 kJ/mol – in cells this is even lower, so reaction is reversible
78
9) Dehydration of 2-PG to PEP
Catalyst – enolase | ΔG = 7.5 kJ/mol – again, in cells this is low, so reversible reaction can occur
79
10) Transfer of P from PEP to ADP
Catalyst – pyruvate kinase *2 ATP’s produced* ΔG = -31.4 kJ/mol – highly exergonic, so reaction is spontaneous This final step produces pyruvate
80
NAD+ needs to be regenerated because
- No NAD+ = no glycolysis - NAD+ limited in the cell – comes from niacin (essential vitamin) - Example opposite is for exercising muscle that produces lactate from the pyruvate, but pyruvate can have other fates - All of these fates will produce NAD+ to replenish the NAD+ required for reduction of various intermediate metabolites - This is termed redox balance
81
What happens to pyruvate?
ANSWER: it depends on what you need at any given time The reactions that produce pyruvate from glucose are similar in most organisms What happens to pyruvate next, is variable: - Ethanol - Lactate - CO2
82
Pyruvate → ethanol
Yeast and several other microorganisms can generate ethanol from pyruvate 2-step process: - Pyruvate decarboxylase - Alcohol dehydrogenase This NAD+ then goes on to be recycled in glycolysis again (redox balance) under anaerobic conditions
83
Pyruvate → lactate
In human cells lacking O2 - Vigorously exercising muscle - RBC’s – lack mitochondria (see later lectures as to why mitochondria are important) Pyruvate is reduced to lactate via fermentation Oxidation of NADH drives the reduction of pyruvate to lactate, which in turn replenishes stores of NAD+ for further glycolysis
84
Cori cycle
- When we sprint, muscles don’t receive O2 fast enough to make ATP via oxidative phosphorylation - Instead ATP is made via substrate-level phosphorylation, producing lactate - Lactate is converted to Glucose in the liver by a process called gluconeogensis - The liver repays the oxygen debt run up by the muscles - This interaction between the liver and muscle is called the Cori cycle
85
Pyruvate → acetyl CoA
- In cells with access to O2 the pyruvate is oxidised to form acetyl coenzyme A (acetyl CoA) - This occurs within the mitochondria of cells - NADH formed in this reaction will later give up it’s hydride ion (:H-) to the respiratory chain.
86
tissues that rely completely on glucose a their main source of energy:
- Brain - Nervous system - RBC’s - Testes - Embryonic tissues
87
brain and glucose
needs 120 g of sugar a day out of the 160 g for the whole body
88
free glucose in tissues
Approx. 20 g
89
glucose from glycogen stores
190 g can be produced
90
daily requirement of glucose
160g
91
If we need more glucose (after lots of exercise or fasting)
it can be generated from other non-carbohydrate molecules | Usually occurs in the liver in response to hormonal controls
92
Gluconeogenesis is not
a reverse of glycolysis
93
7 out of 10 glycolysis reactions
are reversible. | Large –ve ΔG prevents these reactions being reversible
94
The cell bypasses large negative ΔG reactions with
enzymes that catalyse a separate set of irreversible reactions This causes glycolysis and gluconeogenesis to be irreversible processes
95
3 irreversible reactions in glycolysis
(STEP 1) Glucose + ATP ---> Glucose-6-phosphate + ADP (STEP 3) Fructose-6-Phosphate + ATP ---> Frictose-1,6-bisphosphate + ADP (STEP 10) Phosphoenolpyruvate + ADP ---> Pyruvate + ATP
96
4 reactions that sidestep the 3 irreversible reactions of glycolysis allows for
- Independent control of the glycolysis and gluconeogenesis pathways - Prevents them cancelling each other out - Utilise the cytosol (reactions C & D in steps 1 and 2) and also the mitochondria (reactions A & B in step 10)
97
In step 10 of glycolysis PEP (phosphoenolpyruvate) converts to
ATP or Pyruvate the pyruvate gets converted to oxaloacetate and then back into PEP (phosphoenolpyruvate) - happens in the mitochondria
98
steps in conversion of pyruvate into PEP
- Pyruvate enters mitochondria from cytoplasm and gets converted into oxaloacetate - Oxaloacetate gets converted into malate - Malate leaves mitochondria and gets converted to oxaloacetate - Oxaloacetate gets converted to PEP (phosphoenolpyruvate)
99
Pyruvate as substrate in step 10:
- pyruvate carboxylase - (m) malate dehydrogenase - (c) malate dehydrogenase - (c) PEP carboxykinase
100
steps in conversion of lactate into PEP
- Lactate converts NAD+ into NADH to form pyruvate in cytoplasm - Pyruvate enters mitochondria and gets converted into oxaloacetate - Oxaloacetate gets converted into PEP in the Mitochondria - PEP moves into the cytoplasm
101
Lactate as substrate in step 10:
- lactate dehydrogenase - pyruvate carboxylase - (m) PEP carboxykinase
102
Reaction C
- Like the glycolysis reaction (3), it is a control point for gluconeogenesis as it is irreversible under cellular conditions - If it were a direct reversal of the glycolysis reaction, it would require phosphoryl group transfer from F-1,6-bisP to ADP, which is energetically unfavourable - Fructose 1,6-bisphosphatase catalyses
103
Reaction D
- Third bypass reaction is the final step in gluconeogenesis - Dephosphorylation of G-6-P to glucose - Reversing the 1st glycolysis reaction would require phosphoryl group transfer from G-6-P to ADP, which is energetically unfavourable - This reaction is straight forward hydrolysis of the G-6-P - Glucose 6-phosphatase is the catalyst
104
Formation of free Glucose doesn’t occur
in the cytoplasm
105
F-6-P is readily converted to
- G-6-P, which is usually the end point for gluconeogensis - Ending the pathway here allows the cell to “trap” the glucose - This final step to make free Glc takes place in the lumen of the ER - It requires the G-6-P to be shuttled into the lumen and the Glc to be shuttled back out to the cytoplasm:
106
what can enter glycolysis at various points
Fructose and galactose - Common dietary carbohydrates - The body does not have pathways for catabolism of either of these sugars - Most fructose is metabolised by the liver
107
Fructose and fructose 1-phosphate pathway
- Uses 1 or 2 ATP for each fructose molecule converted - 2 enzymes catalyse the conversion of two glycolysis intermediates - Fructose 1-phosphate aldolase - Triose kinase
108
fructose to fructose-1-phosphate
uses fructokinase and converts ATP into ADP | - irreversiable
109
Fructose-1-phosphate is converted into
glyceraldehyde and dihydroxyacetonephosphate - fructose-1-phosphate aldolase used - reversible
110
glyceraldehyde is converted into
glyceraldehyde-3-phosphate - usestriose kinase to convert ATP to ADP - irreversiable
111
Galactose is converted to
- G-1-P through a sugar-nucleotide derivative, UDP-galactose - UDP-glucose and UDP-galactose amounts remain unchanged as they are recycled, therefore the net product of this reaction is G-1-P
112
Pentose phosphate pathway
Produces NADPH for all organisms - LIVER – fatty acid synthesis, steroid synthesis and drug metabolism - MAMMARY GLAND – fatty acid synthesis - ADRENAL CORTEX – steroid synthesis - RED BLOOD CELLS – as an antioxidant ``` Produces pentoses (5-C sugars) - These are precursors of ATP, RNA and DNA ``` Metabolises the small amount of pentose's in the diet - Usually dietary pentose’s come from digestion of nucleotides
113
P-P-pathway has 2 phases
Oxidative, irreversible part - Generates NADPH - Converts G-6-P to a pentose phosphate Reversible, non-oxidative part - Interconverts G-6-P and pentose phosphate to form lots of different 3-, 4-, 5-, 6- and 7-C sugars
114
NADPH links
catabolic and anabolic pathways
115
NADP+ is not
NAD+
116
NADP+ is used in exactly the same way as
NAD+ - an electron carrier
117
NAD+ is used in
metabolism of dietary sugars in the redox reactions of glycolysis and the citric acid cycle
118
NADP+ is used in
anabolism to convert simple precursors into things like fatty acids – NADP+ also acts as an antioxidant
119
Enzymes involved in both metabolic and anabolic pathways have
differing specificities for NAD+ and NADP+ (two electron carriers) which stops NADP+ being used for metabolism and vice versa
120
drinking alcohol causes
reduced gluconeogenesis. | NAD+ gets reduced, particularly in the liver
121
liver needs all of this NAD+ for
gluconeogenesis. | So drinking inhibits gluconeogenesis
122
inhibition of gluconeogenesis can lead to
- lacticacidaemia (increased [blood lactate]) - hypoglycaemia (decreased [blood Glc]) And when untreated: confusion → loss of consciousness → death!
123
inhibition of gluconeogenesis can be particularly bad for those who are
athletic dieting a drunken bum
124
first step of gluconeogenesis
lactate gets converted to pyruvate through NAD+ becoming NADH + H+
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Black water fever caused by
G-6-P dehydrogenase deficiency: - Genetic condition affecting 400 million people worldwide 1st step in the irreversible part of the P-P-P is catalysed by the enzyme G-6-P dehydrogenase G-6-P dehydrogenase deficiency causes low RBC NADPH levels This allows damaging free radicals and H2O2 to build up, which damages the RBC membranes The damaged RBC are then unable to suffer the extra trauma of infections, divicine toxin etc. Prevalence of this condition suggests it confers an evolutionary advantage As with sickle cell anaemia, ♀ carriers are resistant to the malaria parasite
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Black water fever | Symptoms under certain conditions:
Infection Certain antibiotics After eating fava beans (divicine) Haemolytic anaemia – RBC’s burst, which darkens the urine with the iron they contain
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PEPCK overexpression gives
lots of PEP in muscle from lactate
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PEPCK mouse | PEP then enters the citric acid cycle
- So, lactate → PEP → pyruvate (last step of glycolysis) - Pyruvate can enter the citric acid cycle - Thus, lactate formed in the exercising muscles of PEPCKmus mice ends up in the citric acid cycle, which in turn provides energy for most of the ATP needed for muscle function - This way the mice can keep on going and going and going...
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Krebs cycle is also called
tricarboxylic acid (TCA) cycle
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kerbs cycle is a
common metabolic pathway for all “fuel” molecules (carbohydrate, fatty acids and amino acids)
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kerbs cycle occurs in the
mitochondrial matrix
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kerbs cycle vs glycolysis
Unlike glycolysis, which yields a small amount of energy (just 2 ATP’s), this cyclic pathway yields much more energy that is then passed on to another biochemical system (the electron transport chain), which produces large amounts of ATP. It also manages to be part of catabolic processes.
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Citric acid cycle – an overview
The cycle is a “gateway” to the aerobic metabolism of any molecule that can be transformed into an acetyl group or component of the cycle - Cycle does not produce ATP directly - It does not include O2 as a reactant - It removes e-’s and passes them on to form NADH and FADH2 - The cycle in collaboration with oxidative phosphorylation produces 90% of aerobic cell energy - It’s very efficient - Cyclical - Small number of citric acid cycle molecules can make loads of NADH and FADH2
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Evolution of the cycle
Primitive metabolism is believed to have been similar to glycolysis Glycolysis (or something similar) yields no net oxidation of glucose (remember the NAD+/NADH redox recycling in glycolysis) It therefore can’t yield all of the potential energy that glucose contains, so through fermentations you get small amounts of ATP (only 2 mol ATP per Glc molecule) Thus, primitive organisms evolved ways of saving “some” of Glc’s potential energy
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Primitive organisms used O2 to
oxidise food molecules (e.g. Glc) further than was previously possible with the glycolysis reaction. This new use of O2 allowed the complete breakdown of high energy food molecules like Glucose. These O2 using organisms therefore had an evolutionary advantage.
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How did cells begin extracting extra energy from hexoses?
- Primitive, anaerobic forms of metabolism are believed to have looked like glycolysis - The last part evolved to re-oxidise the NADH made earlier in the process - when you have O2 (acts as an electron) around, you can skip the last step altogether – NADH can pass it’s H ion through the terminal respiratory system to O2 to be re-oxidised to H2O
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The citric acid cycle evolved to
harvest electrons that could then be used to completely oxidise food molecules to CO2 and H2O
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Acetyl CoA role
- Pyruvate from glycolysis and fatty acids are oxidised further to acetyl CoA in the mitochondrial matrix - Acetyl CoA sits in the centre of energy production for the cell as it allows different intermediates into the main energy producing pathway of the citric acid cycle
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food molecules from cytosol include
pyruvate and fatty acids- these get linked to Acetyl CoA in the mitochondria for citric acid cycle
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How is Acetyl CoA made?
- From pyruvate, through the action of the enzyme pyruvate dehydrogenase - Very complicated series of reactions involving - decarboxylation of the pyruvate molecule - then oxidation - followed by transfer of the CoA complex The decarboxylation step releases two electrons (in the form of 2 H ions), which can pass to O2 to produce more ATP through NADH intermediates
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Pyruvate dehydrogenase
- massive - It contains tens of copies of each enzyme sub-unit (E1, E2, E3) Each sub-unit catalyses a different part of the reaction to convert pyruvate to acetyl CoA
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Pyruvate dehydrogenase | E1
catalyses the first decarboxylation of pyruvate
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Pyruvate dehydrogenase | E2
transfers the acetyl group to coenzyme A
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Pyruvate dehydrogenase | E3
recycles the lipoyllysine through the reduction of FAD, which is recyled by passing electrons to NAD+
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Acetyl CoA enters the citric acid cycle
So, from either carbohydrates or fatty acids we have ended up with acetyl CoA (C2), which enters the “black box” of the citric acid cycle - It’s a “black box” because the intermediate molecules that make up the cycle remain constant - Each turn, 2C’s enter (acetyl CoA) followed by removal of two different C’s as 2x CO2
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acetyl CoA is used again in
oxidative decarboxylation and then removed again in substrate level phosphorylation. α-ketoglutarate dehydrogenase reaction is similar to pyruvate dehydrogenase
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8 main steps to citric acid cycle detailed
``` condensation dehydration hydration oxidative decarboxylation (makes α-ketoglutarate) oxidative decarboxylation substrate level phosphorylation dehhydrogenation hydration (makes malate) dehydrogenation (makes oxaloacetate) ```
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the CO2 we produce comes from
the citric acid cycle
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Entry into the citric acid cycle is
controlled. Pyruvate dehydrogenase (PDH) is regulated by it’s immediate products and the end point of cellular respiration, ATP It’s regulated depending on the needs of the cell: - if cell has enough energy acetyl CoA, NADH and ATP send negative feedback to PDH. - if cell needs energy then pyruvate is sent to PDH and ADH goes to PDH
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2 other points of control in citric acid cycle
Both points are at non-reversible reactions (exergonic steps) First one – isocitrate dehydrogenase Second one – α-ketoglutarate dehydrogenase These control points allow re-direction of cellular resources
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control in citric acid cycle: | isocitrate dehydrogenase
As with pyruvate dehydrogenase, this enzyme is allosterically controlled through ATP and NADH concentrations ATP and NADH will negatively regulate ADP positive regulates
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control in citric acid cycle | α-ketoglutarate dehydrogenase
Again, ATP and NADH negatively regulate | Also, succinyl CoA negatively regulates
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Blocking isocitrate dehydrogenase causes
citrate build up (isocitrate and citrate are interconvertable), which shuttles citrate into the cytoplasm causing phosphofructokinase to stop glycolysis.
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α-ketoglutarate builds up when
α-ketoglutarate dehydrogenase is inactive, which switches it’s use to production of amino acids
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Citric acid cycle is called an
amphibolic pathway, as it serves both catabolic and anabolic processes
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The cycle can provide biosynthetic precursors. | this is because
When cellular energy needs are met through the citric acid cycle, it can produce the building blocks of nucleotide bases, heme groups and proteins One problem: this depletes the cell of citric acid cycle intermediates In exercising muscle the cells require ATP, which depletes the amount of oxaloacetate
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In gluconeogenesis, pyruvate can be converted to oxalocaetate by the enzyme pyruvate carboxylase Pyruvate carboxylase is only active
when acetyl CoA is present, so a build up of acetly CoA triggers this reaction This is known as an anaplerotic reaction (Greek origin, meaning to “fill up”)