Cancer Genetics Flashcards
Six Features of Cancer Cells
- independence of external growth signals
- insensitive to anti-growth signals
- ability to avoid apoptosis
- ability to replicate indefinitely
- ability to trigger angiogenesis
and vascularize - ability to invade tissues and establish secondary tumors
t(8;14)(q24;q22)
Burkitt’s lymphoma; MYC gene translocated next to immunoglobulin gene
t(9;22)
Philadelphia chromosome; BCR-ABL fusion oncogene causing chronic myeloid leukemia
Four Classes of Cancer Regulatory Genes
- protooncogenes/oncogenes
- tumor suppressor genes
- apoptosis regulation genes
- DNA repair genes
Oncogenes
- “too much gas”
- GoF mutation that is dominant at cellular level and promotes uncontrolled cell growth
- Examples: Her2, BCR-ABL, RAS family
Tumor Suppressor Genes
- “no brakes”
- LoF mutation that is recessive at cellular level and leads to loss of cell division control
- Examples: RB1, BRCA1/2, NF1/2, etc
Apoptosis Regulation Genes
- “energizer bunny”
- damaged cell does not undergo programmed cell death
- Examples: TP53
DNA Repair Genes
- “no quality control”
- enzymes lose function to repair DNA appropriately
- seen in both heterozygous and homozygous states
- Examples: ATM/ataxia telangiectasia, NBN/Nijmegen breakage, Bloom, Fanconi anemia
Population Risk - Prostate Cancer
14%
Population Risk - Breast Cancer
12-13%; <1% in males
Population Risk - Colorectal Cancer
4-5%
Population Risk - Pancreatic Cancer
1.5%
Population Risk - Ovarian Cancer
1%
Population Risk - Uterine Cancer
3%
Cancer Risk Factors
- age
- tobacco
- diet
- alcohol consumption
- occupational exposures
- hereditary factors
- radiation
- virus exposure
- chronic conditions (Crohn’s, celiac)
Colorectal Cancer Risk Factors
- diet
- family history
- alcohol
- cigarettes
- chronic disease
- history of polyps
- older age
Hallmarks of Hereditary Cancer
- cancer diagnosed at an early age (<50; premenopausal)
- multiple close relatives with same or related cancers
- 2+ primary cancer diagnoses in same individual
- certain rare cancers or tumors
- other features associated with hereditary cancer syndromes
Limitations to Assessing Hereditary Cancer Risk
- small family size/limited family structure
- incomplete family history
- inability to document diagnoses
Limited Family Structure
fewer than 2 first- or second-degree female relatives surviving beyond age 45 years in either lineage
Uninformative Negative
- negative result in context of undocumented familial pathogenic variant that cannot rule out a hereditary predisposition
- risk based on personal and family history
True Negative
- negative result in context of a documented and identifiable familial pathogenic variant
- risk is population risk
Multi-Gene Panel Testing
- benefits: higher mutation detection rate, may reduce uninformative negative results, increased number of patients benefit from risk-reducing options, more cost and time effective than single gene, may reveal more than 1 pathogenic variant
- limitations: increased chance to find a VUS, variant classifications may differ across labs, limited data regarding cancer risk for some genes, lack of clear guidelines for medical management of mutation carriers for some genes
Polygenic Risk Scores
- combines risk contribution of multiple SNPs to generate a single risk estimate that is more comprehensive than risk estimate obtained from any individual SNPs
- performance improved when combined with family history or additional clinical features
Breast Anatomy
- 15-20 lobules that produce milk in lactating women
- fat (1/3 of breast) not considered part of breast tissue
- stroma is fibrous connective tissue
- lymphatic system tries to flush out cancer cells when present
Breast Cancer Risk Factors
- age: 1/3 breast cancers in women >50y
- alcohol use: 2+ drinks per week increase estrogen levels in body
- benign breast conditions
- atypical breast cells (hyperplasia)
- ethnicity: white women more likely to get it; non-white women more likely to die from it
- personal history and family history
- hormones: menarche <12y, menopause >55y, ERT, age at first live birth >30y, no pregnancy, no breast-feeding, postmenopausal obesity, prolonged HRT use >5y
Benign Breast Lesions
- cyst: fluid-filled sac; complex cysts should be biopsied
- fibroadenoma: smooth, round lumps that move easily with breast tissue; size may fluctuate with menstrual cycle
- microcalcifications: specks of calcium on mammogram; 20% associated with malignant tumor
LCIS
not cancer but 7-11x more likely to develop invasive breast cancer
DCIS
- noninvasive, preductal stage 0 breast cancer
- 1/3 turn into invasive cancer
IDC
- 80% of all breast cancer diagnoses
- originated in epithelial cells of milk duct and spread through duct walls to surrounding tissues
- types: tubular, medullary (BRCA1), mucinous, colloid, papillary, cribriform
ILC
- 10% of all breast cancer diagnoses
- originated in lobules and spread through lobule walls to surrounding tissues
- CDH1/diffuse gastric cancer
Inflammatory Breast Cancer
- 1% of all breast cancer diagnoses
- high-grade, aggressive cancer
Phyllodes Tumor
- “leaf like”
- originates from stromal cells and may be benign or malignant
- malignant reported in LFS
Paget’s Disease of the Nipple
- cancer cells collect around nipple causing scaly, red, itchy nipple/areola
- 97% associated with cancer elsewhere in breast
Breast Cancer Screening - Average Risk
- 25-29y: clinical encounter every 1-3y, breast awareness
- 40y+: annual clinical encounter, annual screening mammo, breast awareness
Women at Increased Risk for Breast Cancer
- prior history of breast cancer
- women with lifetime risk >20% as defined by models largely based on family history
- patients who received RT <30y
- 5-year invasive breast cancer risk >1.7% in women >35y
- women who have lifetime risk >20% based on history of LCIS or ADH/ALH
- pedigree suggestive of known genetic predisposition
Breast Cancer Screening - Lifetime Risk >20%
- clinical encounter every 6-12m
- annual screening mammo, which begins 10y prior to youngest diagnosis but not before 30y
- recommend annual breast MRI, which begins 10y prior to youngest diagnosis but not before 25y
- recommend risk-reducing strategies
- breast awareness
Mammogram
- low dose x-ray picture of breast
- can detect tumors before palpable
- less informative in dense breasts
BI-RADS
- breast density levels
- 40% of women have dense breasts
- BI-RADS 4-6 require biopsy or treatment
Tomosynthesis
3D mammogram
Breast MRI
- uses a powerful magnetic field linked to computer and injection of gadolinium dye for contrast
- can find things mammo can’t
- false positives can lead to unnecessary biopsy
Breast Ultrasound
- helps distinguish between fluid-filled cysts from solid tumors
- offered to women with dense breasts
- suitable for pregnant women
- least sensitive and specific
Biopsy
- incisional: takes small sample from mass for analysis
- excisional: removes entire mass
- core: removal of tissue using wide needle
- fine-needle aspiration: removal of tissue using thin needle
- if malignancy detected, biopsy sentinel lymph node
Cancer Staging
T = size of tumor N = lymph node involvement M = metastasis to distant sites ER = estrogen receptor status PR = progesterone receptor status Her2 = her2/neu status G = cancer grade
OncotypeDx
- 21 gene panel (16 cancer related, 5 reference) performed on breast tumor typically after surgery for ER+, her2-, LN- breast cancers (stage I)
- predicts likelihood of recurrence and likely benefit of addition of adjuvant systemic chemotherapy to adjuvant endocrine therapy
Lumpectomy
partial mastectomy or breast-conserving surgery
Mastectomy
- modified radical: removes breast, most/all lymph nodes, lining over chest muscles
- radical: also removes pectoral muscles
- total/simple: leaves behind lymph nodes and muscles
- double: both breasts
- skin sparing: for immediate breast reconstruction
- nipple sparing: nipple and areola left intact
Breast Reconstruction
- implant reconstruction: saline, silicone gel, or combo
- autologous/flap reconstruction: tissue transplanted from another part of body
Radiation
targets remaining breast tissue, neighboring lymph nodes, chest wall via external beams or surgically implanted seeds
Chemotherapy
post-op systemic therapy or neoadjuvant therapy (treat tumor before surgery)
Hormonal Therapy
- ER/PR+: tamoxifen, aromatase inhibitor (good for postmenopausal women)
- Her2+: Herceptin, Perjecta
PARP Inhibitor
- biological therapy that prevents PARP from repairing double-stranded breaks
- BRCA genes repair DNA through homologous recombination while PARP repairs through base excision repair
Candidates for Breast Cancer Counseling
- early age of onset
- multiple relatives with same/related cancer
- multiple promaries
- AJ ancestry
- unusual presentation/rare cancer
- pathology (TNBC)
- known pathogenic variant, including those uncovered on tumor testing