C14 Sample Questions from Brock Flashcards
The metabolic diversity of photosynthetic bacteria stems from different
A) bacteriochlorophylls and pigments they contain.
B) chlorophylls they can have and organic compounds they can produce.
C) light-harvesting complexes, electron donors, and organic compounds they produce.
D) unrelated taxa capable of photosynthesis.
A) bacteriochlorophylls and pigments they contain.
Metabolic diversity in photosynthetic bacteria is largely influenced by the variety of bacteriochlorophylls and other pigments, which enable them to capture light energy across different wavelengths.
Whether an organism is classified as a photoheterotroph or a photoautotroph depends on its
A) energy source.
B) carbon source.
C) oxygen requirements.
D) carbon and energy sources.
D) carbon and energy sources.
Classification into photoheterotroph (using light for energy but relying on external organic carbon sources) or photoautotroph (using light for energy and CO2 for carbon source) hinges on both energy and carbon source utilization.
In photosynthesis, NADH and NADPH are produced from NAD + and NADP+ by
A) oxidation reactions.
B) reduction reactions.
C) both oxidation and reduction reactions.
D) neither oxidation nor reduction reactions.
B) reduction reactions.
NADH and NADPH are formed through the reduction of NAD+ and NADP+, respectively, indicating the gain of electrons (reduction).
Bacteriochlorophyll and chlorophyll contain ________ as a cofactor.
A) iron (II)
B) iron (III)
C) magnesium
D) manganese
C) magnesium
Both bacteriochlorophyll and chlorophyll have magnesium at their molecular core, crucial for their light-absorbing properties.
Which of the following is NOT a role of carotenoids?
A) as accessory pigments
B) photoprotection
C) to produce singlet oxygen
D) to quench toxic oxygen species
C) to produce singlet oxygen
Carotenoids are known for photoprotection (quenching excessive energy and preventing damage) and as accessory pigments, but they are not primarily involved in producing singlet oxygen; rather, they often protect against its damaging effects.
Proteomic analysis of a microbial community indicated an abundance of phycobiliproteins. Which phototrophic group is likely active and abundant in this community?
A) cyanobacteria
B) eukaryotic phototrophs
C) green bacteria
D) prochlorophytes
A) cyanobacteria
Phycobiliproteins are characteristic light-harvesting pigments found predominantly in cyanobacteria and some eukaryotic algae.
At some of the lowest light concentrations, ______ can still grow well due to their _______, which effectively harvest photons for energy.
A) green bacteria / antenna pigments
B) green bacteria / chlorosomes
C) purple bacteria / antenna pigments
D) purple bacteria / chlorosomes
B) green bacteria / chlorosomes
Green bacteria utilize chlorosomes, highly efficient light-harvesting structures, enabling growth at very low light intensities.
Phycoerythrin is
A) the red phycobiliprotein.
B) the blue phycobiliprotein.
C) a type of carotenoid.
D) a green carotenoid.
A) the red phycobiliprotein.
Phycoerythrin is indeed known for its red fluorescence, a type of phycobiliprotein involved in light harvesting.
Two separate photosystems involved in electron flow is a hallmark of
A) anoxygenic phototrophs.
B) green sulfur bacteria.
C) oxygenic phototrophs.
D) purple bacteria.
C) oxygenic phototrophs.
Oxygenic phototrophs, like plants and cyanobacteria, characteristically employ two photosystems (PSI and PSII) in linear electron flow, producing oxygen.
Membrane vesicles known as chromatophores, which function in photosynthesis, are commonly found in
A) algae.
B) green sulfur bacteria.
C) most autotrophic organisms.
D) purple phototrophic bacteria.
D) purple phototrophic bacteria.
Chromatophores are specialized membrane vesicles involved in photosynthesis, typically found in purple bacteria.
ʺSpecial pairʺ is the name given to the ______ in the photochemical complex of the purple bacteria.
A) two bacteriochlorophyll a molecules
B) two bacteriochlorophyll b molecules
C) two quinones
D) two reaction centers
A) two bacteriochlorophyll a molecules
The “special pair” refers to the closely associated pair of bacteriochlorophyll a molecules at the heart of the reaction center in purple bacteria.
What will happen to a cyanobacterium that has its photosystem II (PSII) blocked?
A) Additional electron acceptors, such as NADP+, will be required to oxidize oxygen and overcome the lost PSII process.
B) Anoxygenic photosynthesis only using photosystem I (PSI) could occur by using cyclic photophosphorylation and an alternative electron donor such as H2
C) It will die from being unable to obtain energy for photosynthesis.
D) Photons will generate excessive reactive oxygen species and the cyanobacterium will die as a consequence.
B) Anoxygenic photosynthesis only using photosystem I (PSI) could occur by using cyclic photophosphorylation and an alternative electron donor such as H2
Blocking PSII would prevent linear electron flow, but cyanobacteria could potentially continue with cyclic photophosphorylation using PSI, albeit with different electron donors.
Which group of microorganisms would the Calvin cycle LEAST likely be found in?
A) purple Bacteria
B) chemolithotrophic Bacteria
C) cyanobacteria
D) anoxygenic Chloroflexus
B) chemolithotrophic Bacteria
The Calvin cycle is a CO2 fixation pathway primarily associated with photoautotrophs and some chemoautotrophs that fix CO2; chemolithotrophs might use other fixation pathways or not fix CO2 at all.
The process by which electrons from the quinone pool are forced against the thermodynamic gradient to reduce NAD+ to NADH is called reverse
A) proton motive force.
B) reduction.
C) electron transport.
D) energy flow.
A) proton motive force.
Reverse electron flow against the proton motive force gradient requires energy, often to reduce NAD+ to NADH in certain metabolic contexts.
The path of electron flow in oxygenic phototrophs is referred to as the scheme.
A) E
B) S
C) Q
D) Z
D) Z
The Z scheme illustrates the linear electron flow from water to NADP+ in oxygenic photosynthesis, resembling the letter Z due to its shape on energy level diagrams.
Plastocyanin is a
A) membrane-bound sac found in certain bacteria.
B) photosynthetic pigment found in some bacteria.
C) copper-containing protein in photosystem II that donates electrons to photosystem I.
D) blue-green bacterium known for its unusual photoreactive complex.
C) copper-containing protein in photosystem II that donates electrons to photosystem I.
Plastocyanin is a copper-containing electron carrier protein involved in transferring electrons from PSII to PSI in oxygenic photosynthesis.
The Calvin cycle
A) is responsible for the fixation of CO2into cell material.
B) utilizes both NAD(P)H and ATP.
C) requires both ribulose bisphosphate carboxylase and phosphoribulokinase.
D) uses CO2, NAD(P)H, and ATP to make biomass with ribulose bisphosphate carboxylase and phosphoribulokinase.
D) uses CO2, NAD(P)H, and ATP to make biomass with ribulose bisphosphate carboxylase and phosphoribulokinase.
The Calvin cycle is a CO2 fixation pathway that utilizes NAD(P)H and ATP, involving key enzymes like ribulose bisphosphate carboxylase and phosphoribulokinase.
Regarding CO2 fixation mechanisms in the autotrophic green sulfur bacteria,
A) Chlorobium uses the reverse citric acid cycle, and Chloroflexus uses the hydroxypropionate pathway.
B) Chlorobium uses the hydroxypropionate pathway, and Chloroflexus uses the reverse citric acid cycle.
C) both Chlorobium and Chloroflexus use the reverse citric acid cycle.
D) both Chlorobium and Chloroflexus use the hydroxypropionate pathway.
A) Chlorobium uses the reverse citric acid cycle, and Chloroflexus uses the hydroxypropionate pathway.
Chlorobium is known for using the reverse citric acid cycle, while Chloroflexus uses the 3-hydroxypropionate pathway.
In most cases, the final product of sulfur oxidation is
A) hydrogen sulfide.
B) elemental sulfur.
C) sulfate.
D) thiosulfate.
C) sulfate.
Sulfate is the most common end product of sulfur oxidation in many sulfur-oxidizing bacteria.
Identifying carboxysomes in a bacterium suggests it
A) contains the reverse citric acid cycle.
B) has a deficient Calvin cycle and accumulated CO2.
C) is in a carboxylic acid rich environment and is storing excess quantities for potentially harsh conditions.
D) will use the Calvin cycle to convert the concentrated into biomass.
D) will use the Calvin cycle to convert the concentrated CO2 into biomass.
Carboxysomes are organelles that contain RuBisCO and are involved in CO2 concentration for the Calvin cycle, indicating the bacterium uses this pathway for CO2 fixation.
Ferrous iron (Fe2+) oxidation generally occurs in environments with
A) alkaline conditions.
B) high H+
C) high oxygen content.
D) little or no light present.
B) high H+.
Ferrous iron oxidation is often favored in acidic (high H+) environments, where Fe2+ is more soluble.
Alternative autotrophic routes to the Calvin cycle such as the reverse citric acid cycle and the hydroxypropionate pathway are unified in their requirement for
A) CO2.
B) coenzyme A.
C) NAD(P)H.
D) organic compound(s) formed.
C) NAD(P)H.
Many alternative CO2 fixation pathways, like the reverse citric acid cycle and hydroxypropionate pathway, require reducing power in the form of NAD(P)H.
The aerated upper layer of soil is likely to have ___________ concentrations of H2 for aerobic H2-oxidizing Bacteria, so these bacteria likely ________.
A) high / thrive in such conditions by not competing with chemoorganotrophs
B) high / generate important reducing equivalents as byproducts for other microorganisms in the soil
C) low / do not occur in such habitats
D) low / will need a chemoorganotrophic way to grow as well
C) low / do not occur in such habitats.
Aerated (oxygen-rich) environments, like the upper layer of soil, are less likely to have significant H2 concentrations due to rapid oxidation.
What metabolic advantage do cells have in storing the elemental sulfur byproduct from sulfide oxidation?
A) The cells avoid producing transport energy waste to secrete the sulfur.
B) The byproduct serves as an electron reserve for subsequent oxidation.
C) Sulfur decreases the intracellular acidification for non-acid-tolerant sulfide oxidizers.
D) The byproduct can be used for other biosynthetic pathways that use sulfur, such as Rieske Fe-S proteins.
B) The byproduct serves as an electron reserve for subsequent oxidation.
Stored elemental sulfur can be oxidized later, providing electrons for energy production when other substrates are scarce.
A cell that lacks sulfite reductase but can still oxidize sulfur for energy could be identified by
A) adenosine phosphosulfate reductase coupled with substrate-level phosphorylation.
B) electrons being transferred to cytochrome c prior to shuttling them into the electron transport chain.
C) identifying an alternative quinone, flavoprotein, or cytochrome.
D) quantifying the release of sulfate byproduct.
D) quantifying the release of sulfate byproduct.
Without sulfite reductase, sulfur oxidation would likely proceed directly to sulfate, measurable as an end product.
The only organisms that perform photosynthesis are ones that produce some form of
A) chlorophyll or bacteriochlorophyll.
B) carotenoids.
C) phycoerythrin.
D) phycocyanin.
A) chlorophyll or bacteriochlorophyll.
These pigments are essential for absorbing light energy in all photosynthetic organisms.
Which of the following are NOT found within the photosynthetic gene cluster of Rhodobacter (a purple phototrophic bacterium)?
A) genes encoding reaction center and light-harvesting photocomplexes
B) genes encoding proteins involved in phycobiliprotein biosynthesis
C) genes encoding proteins involved in bacteriochlorophyll biosynthesis
D) genes encoding proteins involved in carotenoid biosynthesis
B) genes encoding proteins involved in phycobiliprotein biosynthesis.
Rhodobacter, a purple bacterium, does not use phycobiliproteins (characteristic of cyanobacteria and some algae) for light harvesting.
Anammox is an anaerobic process that generates energy from ______ and forms N2.
A) ammonia
B) ammonium
C) ammonia and nitrate
D) ammonia and nitrite
D) ammonia and nitrite.
Anammox bacteria convert ammonia and nitrite into nitrogen gas (N2) in the absence of oxygen.
What would likely occur if an anammox bacterium was unable to use ladderane lipids?
A) Ammonium rather than ammonia would be used due to ammonia toxicity to other cellular processes within the anammoxosome.
B) It would require a different source for carbon assimilation.
C) Rates of anammox would be considerably slower due to a lack of localized metabolism.
D) Toxic products of the anammox reaction could kill the cell.
C) Rates of anammox would be considerably slower due to a lack of localized metabolism.
Ladderane lipids are crucial for the unique membrane structures in anammoxosomes, where the anammox reaction occurs; without them, the reaction rate would likely decrease.
Which of the following reactions is classified as a heterofermentation?
A) hexose 2 lactate + 2 H+
B) HCOOH H2 + CO2
C) glucose lactate + ethanol + CO2 + H+
D) fructose 3 acetate + 3 H+
C) glucose → lactate + ethanol + CO2 + H+.
Heterofermentation involves the production of more than one type of product (e.g., lactate, ethanol, and CO2) from a single substrate (glucose).