biophysics Flashcards
water characteristics
dipolar (H-bonding) > high bp
hydration cell of interactions
solubility of larger biological molecules
more polar / charged side groups = higher solubility
charged side groups
amino
carboxyl
phosphate
polar side groups
alcohol
thiol
carbonyl
ester
amide
hydrophibicity
apolar groups disrupt H-bonding
drives protein folding
ampiphatic
both polar and non-polar end
brownian motion
thermal energy moving molecules in solution
diffusion
net flux of molecules down a concentration gradient due to random thermal motion
what drives passive transport across membranes
steady state diffusion
flux equation
J = P (C1-C2)
J= flux
P= permeability
time scale to transverse distance R with diffusion coefficient D
T=R^2/6D
U/ internal energy
capacity of a system to do work
chemical potential
determined by:
chemical bonds within
intermolecular bonding
1st law of thermodynamics
change in H = change in U + p (change in V)
enthalpy change = energy released by a reaction - work
ammonium nitrate solution
favourable but has positive enthalpy change
entropy
measure of system disorder
2nd law of thermodynamics
entropy of an isolated system will either increase or remain the same
entropy vs enthalpy
large change in entropy can drive a reaction despite enthalpic favourability
positive change in enthalpy
order to disorder
high to low enthalpy
negative change in enthalpy of system
Boltzmann formula
entropy = boltzmann constant *ln(number of accessible microstates)
Boltzmann constant
1.3*10^-23 J/K
minimum entropy
0
entropy relation to microstates
less entropy = less translational microstates accessible
KE relation to accessible microstates
as KE decreases so does number of accessible microstates
entropies of perfectly crystalline substances at 0K
0
Gibbs free energy function
determines whether reaction is favourable