Bio Flashcards
sucrose
glucose and fructose
lactose
galactose and glucose
maltose
glucose twice
when OH points down, its on
alpha sugar. points up Is beta
starch sugar
linear starch: amylose
branched: amylopectin 1.4 and 1.6
glycogen sugar
alpha bonded
- stored in liver and cells
cellulose
beta 1,4
- structure in plants
chitin
- fungi cell walls
beta but with nitrogen
- N- acetyl glucosamine
protein terminus
N C Carboxyl
cysteine
contains sulfur for disulphide bridges
proteome
its like a genome
cell can have many proteomes
protein structure shape
fibrous is usually structural
globular is enzymes
intermediate
protein denaturation
- high or low temp, pH changes, salt concentrations
specificity constant
higher means more substrate affinity. highly efficient
co factor
non protein molecule that helps enzymes
coenzyme
organic cofactor
holoenzyme
bound to cofactors
apoenzymes
enzymes that are not bound to their cofactors
prothetic groups
cofactors are tightly bonded to their enzymes
competitive inhibition
rate of enzyme action can be increased by adding more substrate
noncompetitive inhibition
rate of enzyme action can’t be increased by adding more substrate
Michaelis constant
50 percent max velocity
- large KM means many substrate is needed so enzyme fcn is LOW
lipids structure atoms
CHO
triglyceride
- glycerol 3 c
- three fatty acids
phospholipids
- have a glycerol backbone, one phosphate group and two fatty acids
cholesterol
4 rings
- used in steroid hormones
- also cell membranes
- starting material for vitamin D and bile acids
membrane fluidity
- temperature: when its high, membrane decreases fluidity by increasing unsaturated fatty acids
cholesterol
saturated vs unsaturated
low density lipoproteins
- low protein density and work to deliver cholesterol to periphery
- BAD
high density lipoproteins
- high protein density
and take cholesterol away from periphery - GOOD
waxes fat
- long chains with alcohol
carotenoids fat
plant pigments
have rings at each end
nucleic acid molecule structure
CHONP
nucleosides
contain a 5c sugar and nitrogenous base
nucleotides
5 c sugar and nitrogen and P
Purines
two ringed
phosphodiester bonds
- 5’ end is the phosphate, r’ end is the hydroxyl
- extended from 3’ end
AT bonds
2 h bonds
central dogma of genetics
DNA- RNA to proteins
integral proteins
entire bilyarer
- cell signalling or transport
peripheral proteins receptor
trigger secondary responses in the cell for signalling
peripheral proteins adhesion
- attaches cell to other things
- act as anchors for cytoskeleton
- internal filaments and tubules
peripheral proteins cellular recognition
- proteins which have carbohydrate chains (glycoproteins)
uni, symp, and antiporters
- single, double or opposite in facilitated transport
facilitated transport
integral proteins allow larger hydrophilic molecules to cross membrane
channel and carrier proteins
facilitated transport
- open tunnel or face one side and change to bring it to the other one
passive diffusion
type of facilitated that is done by channel proteins
active transport 2 types
primary uses atp
secondary uses free energy released when other molecules move across a gradient to pump the molecule
cytosis
active transport
- bulk and hydrophilic
receptor mediated endocytosis
requires binding of dissolved molecules to peripheral membrane receptor proteins
exocytosis
release stuff through vesicle secretion
cytoplasm
cytosol plus organelles
nucleus what occurs
- DNA - mRNA
nucleoplasm
cytoplasm of nuc
nuclear envelop
membrane of nucleus. has PERInuclear space between
nuclear pores
holes in envelope
nuclear lamina
proves structure to nuc and regulates DNA
nucleolus
- makes rRNA and ribosomal subunits (rRNA and proteins)
where are ribosomes found
in nuc, cytosol, and ER
eukaryotic ribosomal subunits
60s, 40s assemble in nucleoplasm
then export to cytosol to make ribosome 80s
prokaryotic ribosomal subunits
50s and 30s assemble in nucleic , and form in cytosol 70s
what do ribosomes make
free floating: make proteins in cytosol
rough ER: make proteins that send out of cell or to cell membrane
rough ER
cts with outer membrane of nuclear envelope
- rough from ribosomes
- proteins made go into the lumen inside the ER for modification, then out of cell or to cell membrane
smooth er
synthesizes lipids, produces steroids and detox cells
Golgi apparatus
has cisternae (flattened sacs) that package stuff.
- vesicles come from the cis face (close to ER) and leave from trans face (side to cell membrane)
lysosomes
break down endocytosis stuff by digestion at low ph. also do autophagy (recycle) and apoptosis
transport vacuoles
- transport between organelles
food vacuoles
hold food and fuse with lysosomes
central vacuoles
very large in plants. have a tonoplast membrane that exerts turgor
- storages and material breakdown
contractile vacuoles
found in single celled organisms. get rid of water
storage vacuoles
store starch, pigments and toxic substances
contractile vacuoles
pump out water in single celled orgs
endomembrane system
modify package and transport proteins
- nucleus, ER, Golgi, lysosomes, vacs and cell membrane
peroxisomes
found in liver and kidney, detox, generate hydrogen peroxide to break down to water using catalase
centrosomes
contain a pair of centrioles, and organize microtubules during cell division
microfilaments
double helix made of actin filaments
involved in cell movement through cyclists, cleavage frrow and contraction
cyclosis
cytoplasm streaming
cleavage furrow
actin filaments contract to split cell
muscle contraction
actin has directionality, so it has a myosin poor to pull on them for muscle contraction
intermediate filmanets
between microfilaments and tubules in size. help with structure. like keratin
lamin filament
intermediate filmament that helps make up nuclear lamina
microtubules
largest in size. give structure and have tubular protein dimers. hollow. have cilia and flagella
centrioles MTOCs
holllow cylinders
- make of 9x3 array of microtubules
- contain a pair of centrioles at 90 angles. replicate during s phase so each cell has one centrosome
cilia and flagella MTOCs
have 9+2 array of double microtubules and two singles in the centre
- produced by a basal body which is formed by the mother centriole
MTOCs
organize microtubules extension in EUK cells
extracellular matrix
provides outside support
extracellular matrix proteoglycan
glycoprotein that has a high proportion of carbs
collagen extracellular matrix
structure organized into collagen fibrils
integrin extracellular matrix
- transmembrane protein that facilitated EDm adhesion and signals to cells about environ,ment
fibronectin extracellular matrix
protein that connects intern to ECM and helps with signal transduction
laminin
behaves like fibronectin. works with cell diff, adhesion and movement. major component of basal lamina
Archaea cell walls
contain polysaccarides
plants cell walls
contain cellulose
fungi cell walls
contain chitin
bacteria cell walls
contain peptidoglycans
virus cell walls
doesn’t have cell wall
cell walls
carb based and provide structure
glycocalyx
glycolipid / protein coat that is found on bacterial or animal epithelial cells. helps with adhesion protection and cell recognition
anchoring junctions
desmosomes and hemidesmosomes
- produce stability in skin, cervix and uterus
cell matrix junctions
connect ECM to cytoskeleton
focal adhesions and hemidesmosomes
focal adhesions
ECM connects via interns to actin inside the cell
hemidesmosomes
ECM connects via interns to intermediate filaments inside the cell
cell cell junctions
connect adjacent cells
tight junctions, desmosomes, adherens, and gap junctions
tight junctions
water tight seal between cells to ensure stuff passes through cells and not between
desmosomes
mechanical stress support. connect cells by intermediate filaments
adherens
similar to desmosomes but connect via actin
gap junctions
allow passage of ions and small molecules between cells
plant cell junctions
- middle lamella
2. plasmodesmoata
middle lamella plant cell
sticky cement similar to tight junctions
plant cell plasmodesmata
tunnels between cells so cytosol travels between
glycolysis eqn
glucose –> 2 ATP 2 NADH and 2 pyruvate
please write out each enzyme in glycolysis
hexokinase. isomerase. phosphofructokinase
pyruvate manipulations eqn
2 pyruvate –> 2 co2 2 nah 2 acetyl coA
pyruvate dehydrogenase
decarboxylates, oxidizes pyruvate and binds acetyl coA
krebs cycle eqn
2 acetyl coA- 4 co2 6 nah 2 fadh2 2 GTP
SEE PAGE
oxidative phosphorylation
takes nADH and FADH2 + o2 –> app H20
aerobic respiration
free energy and spontaneous
NADH atp?
- can make 4-6 as there is a membrane to shuttle. prokaryotes don’t shuttle so they make 6
see chart for aerobic totals
please check
lactic acid
takes 2 NADH and make 2 lactic acid.
cori cycle
converts lactate back to glucose. transport lactate to liver where it Is oxidized
after a meal
glycogen stores in liver and mucles
- insulin stimulates glycogen production
- glucagon levels decrease in blood
- gluconeogensis dec
alcohol
uses 2 NADh to convert to 2 ethanol by also making Co2
obligate aerobes
need o2
obligate anerobes
o2 is poison
facultative anaerobes
can do both o2 and not but prefers o2
microaerophiles
only o2 but not high levels
aerotolerant
can undergo anaerobic respiration but are tolerant to o2
glycogenolysis
makes glycogen to enter glycolysis
glycogenesis
conversion of glucose to glycogen to be stored in the liver
lipolysis
lipases digest fats to fatty acids, and alcohols through lipolysis. then absorbed by enterocytes to reform tryglycerides
beta oxidation
converts fats to acetyl coA and use ATP
adipocytes
store fat and have lipase enzymes to help release triglycerides back into circulation as lipoproteins or bound by albumin
chylomicrons
lipoprotein transport formed by fusing triglycerides with proteins. phospholipids and cholesterol. leave enterocytes and enter lacteals that take fats to body
location of gluconeogenesis
liver
deamination
proteins are least desirable energy
- removal of nH3 deamination and then ammonia is urine
please see cards for difference between pro and euk
please