Bacterial Structure and Physiology Flashcards
Describe conjugation of the F Plasmid
The F plasmid encodes conjugation machinery
- The F plasmid induces a sex pilus in the donor bacterial cell
- The sex pilus allows the donor to contact and bind to the recepient bacterial cell
- A copy of the F plasmid is transferred to the recipient via the sex pilus
- If the F plasmid has been integrated into the host chromosome, additional genes may travel along with it when it is excised
What is the difference between an insertion sequence and a transposon?
Insertion sequences (IS) only contain genes for tranposases
Transposons contain genes for transposase AND other genes that may encode antibiotic resistance or virulence determinants.
Note: Transposons may contain IS at each end
What is an integron?
“Antibiotic resistance machines”
A genetic entity that captures exogenous gene cassettes and ensures their expression.
They are not mobile on their own, but they can be inserted into mobile elements, such as plasmids or transposons
What is an R plasmid?
Why is it significant?
An R plasmid is a conjugative plasmid that carries genes for antibiotic resistance
If a bacterium acquires the R plasmid, it will gain antibiotic resistance
Which bacteria contain cytochrome c?
What test can detect cytochrome c? What does it measure?
Pseudomonas aueroginosa and Neisseria spp.
Oxidase test: measures ability of bacteria to oxidize and change color of N,N-dimethyl-p-phenylenediamine
Where do transcription and translation occur in bacteria?
Both in the cytoplasm
Which sorts of bacteria can form spores?
Which bacteria specifically?
Some Gram-positive bacilli
Clostridium and Bacillus
What is the basic structure of peptidoglycan?
Long polymers of N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM) w/ alternating L-and D- amino acids
The polymers are crosslinked to each other to form 3D sheets
What are capsules made of?
Layers of organic polymers (usually polysaccharides, but can be a peptide) that form hydrophilic gels surrounding the cells of some bacteria
When would you want to use a selective media to grow bacteria?
When you are trying to culture a slower-growing bacteria
Example: you take a sputum sample and want to culture a slower-growing bacteria. You don’t want the faster growing bacteria to out-compete and obscure the slow grower. You use a media that is selective for the slower bacteria
Describe the crosslinking process of peptidoglycan synthesis
PBPs link the third amino acids of some tetrapeptides to the terminal amino acids of other tetrapeptides
Which bacteria have an external cytoplasmic membrane but no cell wall?
Mycoplasma
What is transduction?
The mechanism that bacteriophages use for DNA transfer
2 types of transduction:
- Generalized
- Specialized
What are flagella designated for serotyping?
H antigens
Describe the lag phase of bacterial growth
Bacteria are adapting to their new environment
They are making enzymes and intermediates to utilize the nutrients in the medium
They aren’t significantly increaseing in number
When would you want to use Bordet-Genou agar to grow bacteria?
When you are suspicious for Bordetella Pertussis
What class of proteins are penicillin-binding proteins?
Enzymes
What are bacilli?
Rods
What are the functions of bacterial cell membranes?
- Permeability barrier with transport mechanisms
- Electron transport
- Export of membrane and secreted proteins
- Biosynthesis of cell wall components
- Partition of newly replicated chromosome into daughter cells during cell division
What causes septic shock?
High concentrations of LPS, typically due to gram (-) bacterial infections.
Note: Overwhelming gram (+) and fungal infections can also cause septic shock
What kind of infection is caused by a virulent phage?
A virulent phage causes a lytic infection
The injected DNA or RNA takes over the replication system of the host and produces many new virons within the infected cell.
This causes the host bacterium to lyse, spilling the new virons out
How does endotoxin induce its effects?
Stimulates cytokine production by mononuclear cells
After gram staining, an unidentified bacterium appears red.
What kind of bacterium is this?
Why is it red?
Gram negative bacteria appear red because the take up the safarin counterstain
(After the crystal violet/iodine has been washed away by alcohol)
List the phases of bacterial growth
- Lag phase: the bacterium is adpating to its new environment and making enzymes and intermediates needed to survive
- Exponential phase: The bacteria are rapidly dividing via binary fission
- Stationary phase: The bacteria are at a steady state or slightly decreasing; their replication is limited by nutrient availability or toxic product accumulation
Describe the characteristics of fermentation
Generates energy by substrate-level phosphorylation
Organic compounds, such as glucose, service as electron donors and acceptors
Inefficient
Do not require oxygen
Produces endproducts, such as acids, that accumulate in culture medium
What are K antigens?
Capsules of certain bacteria used for serological typing
What is the unique component of bacterial cell walls?
Peptidoglycan
Also known as murein
What are the characteristics of an indifferent (aerotolerant anaerobe)?
- Ferments in presence or absence of oxygen
- Contains superoxide dismutase and catalase
What kinds of bacteria contain superoxide dismutase and catalase?
Obligate aerobes, facultative anerobes, aerotolerant anaerobe
How do capsules prevent engulfment by phagocytes?
Prevent complement activation via the alternate pathway on the cell surface
What is O-Antigen?
Where is it found?
What does it do?
O-Antigen: Repeating units of 3-5 sugar residues
Found in: Outer membrane of gram (-) cell envelope. Part of LPS. (However, not present in all gram (-) bacteria)
Function: Protective against complement-mediated lysis; it confers serum resistance
BUT: antibodies can recognize O-antigens, leading to clearance of the bacteria
What are the two mechanisms bacteria can generate energy?
Fermentation and respiration
What is transformation?
Pieces of naked DNA from lysed bacterial cells are taken up by other bacterial cells and incorporated into their chromosomes
Describe the stationary phase of bacterial growth
Numbers are constant or slightly decreasing
Growth is limited by nutrient exhaustion or toxic product accumulation
What are artificially competent bacteria?
Why are they important?
Artificially competent bacteria are treated to induce transformation
They are important in lab research! E. Coli can be induced to become competent, which allows them to express genes that are important for research
What is the function of catalase?
Degrades hydrogen peroxide to water and oxygen
H2O2 + H2O2 -> 2H2O + O2
Why is bacterial RNA polymerase a useful target for antibiotics?
Bacterial RNA polymerase differs significantly from eukaryotic RNA polymerase
What kinds of bacterial cell membranes contain sterols?
Mycoplasma
(These bacteria do not have cell walls)
What are the characteristics of a strict anaerobe?
- Killed by oxygen
- Grows in absence of oxygen (ferments)
- Lacks superoxide dismutase and catalase
What causes bacterial running?
Counterclockwise rotation of flagella
For which bacteria are capsular vaccines available?
Streptococcus pneumoniae, Haemophilus influenzae B, Neisseria meningitides A & C
What methods can be used to identify bacterial pathogens?
- Staining of clinical specimens or after growth of bacterium on lab medium
- Determining metabolic and biochemical characteristics and antibiotic resistance after growing the organism
- Antibody tests in patient or laboratory assays
- PCR
- MALDI-TOF
- Whole genome sequencing
What is the function of superoxide dismutase?
Degrades superoxide
2O2- + 2H+ -> H2O2 + O2
What is an insertion sequence?
What is its structure?
The simplest transposable element
Structure:
- Inverted repeated base sequences (15-40 BP) at ends
- Genes encoding tranposases in the middle
How big are bacteria?
Generally: 1-2 um
The smallest bacteria overlap with viruses
Which type of bacteria have a thick cell wall?
Gram-positive
What compound do most bacterial membranes NOT contain?
Sterols
Exception: wall-less organisms (mycoplasmas)
What are the characteristics of a facultative anaerobe?
- Respires with oxygen
- Ferments in absence of oxygen
- Contains superoxide dismutase and catalase
Give 4 examples of naturally competent bacteria
- Streptococcus pneumoniae*
- Bacillus* spp
- Haemophilus influenzae*
- Nisseria* spp
Describe the gram staining process
- Apply crystal violet
- Apply iodine
- Alcohol Wash
(Crystal violet and iodine remain in gram (+) bacteria and wash out of gram (-) bacteria) - Sarafin (couterstain; stains gram (+) bacteria red)
What is a conjugative plasmid?
A plasmid that can mediate its own transfer
- Usually larger
What is a bacteriophage?
A virus that infects bacteria. Also called a phage
2 types: Virulent and Temperate
Why are spores hard to kill?
Spores are resistant to heat, UV radiation, drying, and chemical agents
What are coccibacilli?
Short rods that appear to be spherical
What causes bacteria to be serum sensitive?
Lack of long O-side chains = susceptible to complement mediated killing = serum sensitive
(but avoids antibodies)
The presence of flagella can be used to serologically distinguish and classify which bacteria?
Gram-negative enteric bacteria
Ex: Escherichia coli O157:H7 has type 7 flagella and type 157 O antigen
Describe bacterial ribosomes
What subunits do they include?
70S ribonucleoprotein structures
50S subunit (includes 23S, 5S, 34 proteins)
30S subunit (includes 16S and 21 proteins)
Give an example of an artificially competent bacteria
E. Coli
Competence can be induced in E. Coli, allowing them to uptake DNA an express genes to create clones for research
What basic structures do the cell envelopes of Gram negative bacteria consist of?
Two lipid bilayer membranes - cytoplasmic (inner) and outer
Periplasm between the two membranes - consists of glucan structures (osmolarity) and thin peptidoglycan layer
What is a transposon?
Larger transposable element
- Carries extraneous genes in addition to transposition genes
- May encode antibiotic resistance or virulence determinants
- Some consist of extraneous genes flanked by IS elements
- IS element = inverted repeats w/tranposase gene between
- Others just have inverted repeats of 30-40 BPs at each end