Bacterial Pathogenesis and Control of M/O Flashcards

1
Q

Why study bacterial Pathogenesis

A

Understandung how bact cause disease help dev. of method to control

Climate change alter range of pathogens, antimicroial pathogens

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2
Q

Bateria cause of Ulcers

A

Ulcers were thought to be caused by stress and no one believed Dr. Barry Marshall that is a bact cuz stomach is acidic and it was hard to culture… but he cultured them and then he drank it and treated itself and confirmed the hypothesis=Nobel Prize

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3
Q

Helicobacter pylori and ulcers

A

GRam -

Infect 30-50% of pop

Majority=asymptomatic

Neutralize stomach acid by producing urease

Cause inflammation, disrupts stomach mucosa=cause gastric ulcers

STrong link to gastric cancer (only carcinogen bact. in WHO)

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4
Q

What is a pathogen

A

Continuum

BEnegicial: probiotics/Commensal

Neutral

Can be harmful: Pathobionts (opportunistic pathogens)

Harmful: PAthogens (Koch’s postulat: organisms only in infected, never healthy, isolate from infected and reinjected in healthy)

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5
Q

What cause disease+
Terminology (Infection vs disease vs symptoms vs signs)

A

Bact. factors: Route, #, Virulence Potential

Host factors: Host health status, Host defense/genetics

Some beneits us by coloinzation resistance (keep pathogen at bay because “no space”)

**Infection: Pathogen establishes in body
Disease: Infections with signs(Objective manif observed/mesured by others) and symptoms (Subjective characteristics felt by patient)

Asymptomatic carriage: Infection w/o diseases

Sndary infection: Infection that develops in an indiv who is alr infected with diff pathogen

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6
Q

Pathogenesis of bacterial disease (steps)

A

1- Maintain a reservoir
2-Be transported to the host
3-ADhere to, coloniz and/or invade host
4-Multiply/complete life cycles on/in host
5-Evade host defense
6-Leave host and return to reservoir or enter new host

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7
Q

1-Maintain a reservoir

A

Rerservoir= habitat where agent normally live, grow, multiply… may(or not) be the source which an agent is trasnferred to host

A carrier=person with inapparent infection who is capable of transmitting the pathogen to other

Human reservoir (may or ont show symptoms)(Typhoid Mary for Salmonella typhi)

Animal (ex. cow: E. coli or Poultry: Salmonella)

Env (soil: C. tetani)

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8
Q

Typhoid MAry

A

Cook… bacteria transmitted by oral so everyone got sick, she refused to stop working and finally was forcefully quarantined

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9
Q

Step 2: TRansport of the bacterial pathogen to the host

A

Direct
Contact (skin-skin or kissing…)

Droplet spread (sneezing, takling, large/short range…)

Indirect
Airbone (small particle suspended in air for long)

Vehicle-borne (Indirectly transmit an infectious agent-food, water, bio produc as blood, fomite(inanimate objects)

Vector-borne (living beings as mosquitos… may carry an infectious agent thru purely mechanical means or may support growth or changes in the agent)

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10
Q

Step 3: Adherance/Colonization/ Invasion

A

Adherance: Mediated by mol/struc=adhesines

Colonization: Establishment of a site of microbial reproduction on/within host

Invasion:
-can be active penetration into host cell

-Can be active penetration between host cells

-Can be passive (Not related to pathogen itself (wounds, insect bites…) or can use existing host pathways of internalization (ex. phagocytosis)

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11
Q

Types of adhesins and info

A

Non-fimbrial (small embedded)
Fimbriae (Spaghetti)
Type IV pili (Thicker spaghetti)
Curli (Rope-ike intertwined fingers)

Attach to specific struc on host cell
P, glycoP or glycolipids
Presence/Absence of receptor can determine host susceptibility

only one aa makes the diff and make one susceptible

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12
Q

Step 4: Multiply or complete life cycle on or in host

A

Occurs when pathogen fins appropriate env (nutrient, pH, T°, redox potential, protection) withing host… place depend on pathoges

Some have evolved to survive and multiply in diff env in host

Multiply/complete life cycles on/in host: Intra/Extra¢ar pathogens, some incade specidic ¢ (adapted strategies to live insided)

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13
Q

STep 5: Evasion of Host Defense by bact

A

Must have mechanisms to resis host defenses like: complement sys, phagocytosis, specific immune response

Ex. : Bacterial capsule: composed of chem not recognized as foreign, its slippery and diff to engulf by phagocyte

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14
Q

Step 6: Leave the host

A

If microbe is to be perpetuated

Most leave by passive mechanism (feces, urin, droplet, saliva…)
Symptoms helps in this: Runny nose, sneezing, coughing, diarrhea

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15
Q

Virulence factors confer an increased ability to cause disease

A

Improve:

1- Colonization or invasion of host
2- Ability to multiplu and complete life cycle or/in host
3-Ability to evade host defense
4- Ability to leave host and enter new host

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16
Q

Acquision of bacterial virulence factors and types

A

TRansposon, plasmid, phage, pathogenecity island-Can be commensal

Adhesins (cehck pic)

Nutrients acquisition sys (bacterial siderophore scavenge iron, which is in limiting quantities in the host)

Capsule (outside ¢ wall, usually polysasccharide or other, protect phagocytosis by host ¢)

Virulence-associated secretion systems (Translocated “effector” P)… (exist several diff type: type III secresion sys (T3SS))

Toxins (exotoxins: secreted endotoxins: part of the bacterial cell-LPS of Gram negative)

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17
Q

T3SS

A

Encoded by approx. 20 gene

Present in GRam neg pathogens

Inject bacterial P(vary between diff bact) directly into host ¢ (“Syring” gene=similar between diff species)

Cellular effect vary between bact

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18
Q

Endotoxins: LPS of Gram negative bact

A

STructure component of gram neg OM, released when bact lyses (bacterial multiplication)

Toxic component (tocix only at high doses)=Lipid A
HEat stable… toxic only at high dose

Effect are indirect (no enz act onhost… interaction with host cell thru binding of a receptor complex.. induced transcriptional response in the host ¢)

Increased production of host ¢ P which produce sever host-mediated inflammatory response (in case of spsis=fever, high heart rate…)

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19
Q

EX of exotoxin

A

Botulinum toxin (clostridium botulinum)=most posionous naturally occuring substance in the world

Ckeaves a P involved in neurotransmission from motor neurons to muscles (double biision, paralysis, muscle weakness

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20
Q

exotoxins characteristics and categories

A

Usually easily inactivated (ex. heat)

Inactiated tocun can be used to elicit immune response
Tocun=specific antiserum can be sused to treat disease

Antitoxin= antibody used to neutralize a specific toxin

AB exotoxins, membrane-disrupting exotoxins, superantigens(stimulate T cellls>exxagerated immune response)

(can also be categorized by site of action, neurotoxin or enterotoxin…)

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21
Q

AB toxins

A

A subunit=has an enzyme act and is responsible for toxic death

B subunit= mediate cell Binding to specific receptors on target cells/entry

Both act and bindinf can vary depending on specfoc toxin

Diveristy: Diff receptors on host cell, Diff enz act, diff bio eggect, similar overall org

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22
Q

MEmbrane-disrupting exotoxins

A

Attack host cell membrane

Pore forming

Phospho-lipases

check pic

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23
Q

Disease without infection=intoxication

A

ENtry of a specific pre-formed toxin into host

Does not require entry of bact. into host or bact. replication in host

Usually very fast onset

Ex: Bacillus cereus (spore forminh, produce toxin=vomiting, contamination/improper stroage of food, onset 1-1.5 h o fingestion, recovery 6-24h)

24
Q

Enterohemorrhagic E.coli (EHEC)

A

cattle=asymptomatic carriers (resrvoirs)

Oubreak generally ass with ground beef

Infectious dose as few as 10 org

T3SS system: EHEC bacteria stay outside the host(inject arsenal P)

Disease: Diarrhea (bloody colitis)…some poeple have hymoletic uremic syndrome, kidney failure, chronic renal problem, neurological symotims, or deaths

25
Q

EHEC

A

EHEC T3SS: tir: inserts into host cell memb and becoms a receptor for EHEC on the host cell

also encodes Shiga toxin (presnet in intestinal eputheluym/kidney/neurons/cow intestine):

AB toxin, encoded by bacteriphage which have integrated into the chrom.
B subunit binds specific glycolipids on host cell (Gb3)
A subunit inhibits P synthesis by modifying the 60S subunit of the ribosome

26
Q

EHEC treatment and prevention

A

supportive care an dmonitoring for the dev. of complication

Antibiotic therapy and antiperstaltic agentNOT recommended (increased risk HUS: treat the symptoms, watch and eait…ex: fluid administration)

PREVENTION: Handwashing, thorough cooking of beef, keep raw/cooked ustensils separate

27
Q

Microbi«l control in env

A

Living tissue (surgery)
Inanaimate surface
Food/water
Airbone biohazard

28
Q

Food industry

A

Mold and bacterial growth=spolage of food

E.coli: by food, kidney complictions requiring dialysis
Salmonella: by raw pet food and cantaloupe… extesnive drug ressitance

29
Q

MEdicine and antimicrobial therapy

A

Need for sterile and disinfected env. for surgery

STerile instruments and devices

antimicrobial therapy against infections diseases

Control of airbone biohazards for imuno-compromised hosts or nocosomial transmission of infections

30
Q

Biohazard control and public health

A

Biohazard waste from hospital, labs

Lab and occupational safety

Biohaard control to prevent transmission: Ebola, SARS-CoV2
Blood and other biological products (HIV and otehrs)

Outbreaks (Ebola, Norovirus, Tuberculosis)

Epidemic/Pandemics (Influenza, smallpox, SARS-CoV2, HIV/AIDS)

31
Q

Env. microbial control

A

Potable and filtered water

Waste and water management

32
Q

Microbial population control

A

Influcencing factors:

Pop size-Microbial composition (ex. spore)-[]/potency of antimicrobial agents-contact time-T°-Loclal ev:pH… organic matter…

Antiseptis (smthg to skin): reduces the microbial count

Sanitization (smthg to inanimate objects): reduce to a safe amount

Desinfection: Used hospital, lab… wipe surface, deal with vegetative cells (not spores)<

Seterilizatino: kills every m/o (by heat, radiation,chemicals or mechanicall (filter))

we can combine them to reduc emicrobial population

33
Q

BActericidial vs bacteristatic

A

static: stops the growth but dont kill
cidial: kill s cell

check pic

**population death cruve by log:
D value: decimal reduction time (time between two scales (10^7 to 10^6)…. lower D=more efficient…. at any parameter, gotta recaluclate

34
Q

Microbial control methods

A

Physical
Mechanical
Chemical

35
Q

Physical

A

Heat:
-Dry: Incineration, dry oven, sterilize
-Moist:
1-STeam autoclave=sterilize
2-Boiling, pasteurization=Desinfect

Radiation:
-Ionizing: X-ray, gamma=Desinfect/Sterlize
-non-ionizing: UV=Desinfect/Sterilize

36
Q

Autoclave

A

Use steam at high pressure
Sterilize liquide and solid material
Kill spores when T° above 121°C

Pro: cheap, efficient, simple
Con: High PRessure and humidity can damage material

Quality control: Geobacillys pore biological indocator test, heat indicator strip

37
Q

Boiling, pasteurization

A

Used for heat-sensitive product

Sufficient to kill non-spore forming pathogenic bact. to reduce spoilage and food-borne illness bu DON’T STERILIZE
Typically in dairy products

food industry=food spoilage:
VIsible growth of mould… gas/odour.. softening/rotting to enz production, some stay alive after pasteurization

38
Q

Gamma

A

Photons at extremely high frequency and high E

Ionizing radiation is biologically hazardous cuz can damage DNA and 4 struc=but does not make things radioactive

highly penetrating;Very fast acting

Used for sterilization of medical supplies…

Methods used in HIGHLY SPECIALIZED STERILIZATION FACILITIES

39
Q

UV radiation

A

Short range-260nm UV-C-
kill m/o at short distance, doesnt penetrate glass/plastic/water well

Desinfect or sterilize depedn on dosem intensity and fistance from UV

No heat=no phys/chem damage

Used for water, blodd, airfood…

TOXIC TO HUMAN: Need eye and skin protection

40
Q

Chemical

A

Gases: Sterilize/Desinfect
Liquids:
-Antiseptic: Animate
-Chemotherapy: Animate
-Disinfectant: Inanimate

41
Q

Antiseptic

A

Kills or inhibits growth of m/o but does not sterilize

Chemicals used to prevent infection or contamination

Applied to skin/tissue surface thus less toxic

USed everywhere: TRiclosan and chlorhexidine

42
Q

soap… r we changing cecll that make dinsinfection process and diff to deal with subsquentlly

A

MDR(multi-drug resistance) pumps can eject all sorts of compounds that are chemically distinct, induced by antibiotics and biocide… were driving the andtibiotic resitsance by ther use

43
Q

Disinfectant

A

-Kills/inhibit growth of m/o more potent that antiseptics but does not sterilize

-Chemicals used to remove potential pathogenic m/o

  • Applied on inanimate surfaces thus often toxic
    -Ex: bleach, ethanol…

Choice of compounds depend on many properties such as solubility, toxicity , fumes, stability

44
Q

MEchanisms of action: Antiseptics and Disinfectants

A

Antimicrobial effect is not specidif to microbial cell=toxicity

Alcohol (ethanil, isopropanol…): denature P, dissolve lioids in memb, practical use 60-70% EtOH for 10-15 min

Phenolics and phenol dericvatice (ex. lysol) disrupts cell memb and denature P

Aldehyde (ex. gluteraldehyde): highly reactice mol that crosslink with nucleic acid and P t o inactivate them=VERY TOXIC

Halogens=Cl, I,F,Br, Astatine:
Forms hypochlorous acid (HOCl)=highly reactive oxidant;reacts with mol by oxidation
Can sterilize (kill spore) at high [ ] (typically used as disinfectant tho..skin dis. at pool), cheap and easy to use bu toxic
Practical use: 10% for 10 min

45
Q

Chemical

A

Gases: Sterilant/Disinfectant

Liquid:
Antiseptics:Animate
Chemotherapy: Animate
Disinfectant: Inanimate

46
Q

Gas dinsinfectant and sterilizer

A

Useful for heat sensitive item, most are very toxic

Ethylene oxide: highly reactive ting struc, strong alkylating agent that reacts with nucleic acid and P, potent sterilizer that can penetrate plastic wraps. very toxic and flammable

Vaporized hydrogen peroxide: no dammage to non living materials no toxic by-product sinc eit is degraded to water and oxygen

47
Q

Modern approaches to Surface contamination (Self sterilizing surface)

A

Cooper and other antibact, material coated surfaces:

Nanopillar mediating killin gof bact.: Nanopillar of zilica and zinc oxide (like dragonfly)

48
Q

Microbial control methods

A

MEchanical :

Air filtration (sterilize): HEPA (high-efficiency particulate air filter)… pore size (0,1-0,3 micron)… filters airbone, fungi, bact and absorbe virus… use dni biosaftey cabinets, ventilation syst. portable residential air filtration units

Liquid filtration (sterilization): porous (virus need <50nm) membranes… used to sterilize heat-sensitive liquid that is pushed thru

49
Q

Why does antimicrobial control fail

A

Suboptimal method of microbial control
High bacterial load
Highly virulent pathogen
Resistant m/o:
resistance to antiseptics
biofilm formation

50
Q

Biofilms

A

Multi¢ar bact. communities with cells aggregated within an extra¢ar matrix and adherent to a sruface

Found in medical devices and natrual env and in biofouling, waste water treatement, bioremediation

51
Q

Biofilms a protected lifestyle, what they look like

A

Poor penetration
TRappin or inactivation of toxic mol. in biofilm matrix
Physiological state (slow growth)..bact more resistanct
RESISTANT TO BIOCIDE AND ANTIBIOTICS

Formed from indiv bact. on abiotic surface to formation of mushroom like stuc follows a series of steps over a period of time

52
Q

Microbial control methods

A

Chemical:
Gas sterilant, anitseptics, chemotherapy, disinfectant

Physical: Inceineration/dry oven, steam autoclave, bioling/Pasteurization, UV/gamma

Mechanical: AIr filtration, liquid filtration

Grocery store: Pasteurisation, gamma, liquid/air filtration

M/ology labs: gas sterilant, disinfectant, autoclave, UV radiation, liquid filtration

Hospital:gas sterilant, aniseptics, disinfectant, autoclave, UV,gamma

53
Q

4 level safety of biohazard

A

BSL-1: Non pathogens (M/biology lab)

BSL-2: Opportunistic pathogens, not infectious thru aerosol (restricted acces, use of biologucal safety cabinet, extreme care with sharps)

BSL-3: Pathogens, infectious thru aerosol (all air in lab is controlled and filtered and everything is decontaminated)

BSL-4: Deadly pathogens (transf. thru aerosols)(etrance and exit to lab involves howers, vacuum rooom, UV, HAMZAT SUIT)

54
Q

Biohazard control

A

Mode of transmission: contact, airbone, droplets

Infectious dose: low vs high

Mortality/Morbidity, treatment available or not

Vector or non-human reservoir: insect, animals, water

Pathogen to “normal” hosts or only suscptible hosts

55
Q

MoProtective equipment and transmission

A

Gloves, goggle, masks, n-96 maks, gowns

TRansmission thru blood, urins, semen, saliva, +/- droplets

Likely limited viral surival on inanimate surface: possible but low risk of indirect transmision

TRansmission occurs when contact protection is absenct or inadequate and infection status is unknown