Antibody Therapy Flashcards

1
Q

Describe the quarternary structure of antibodies.

A

Antibodies are comprised of four peptide chains, two 440AA heavy chains and two 220AA light chains. The glycosylated heavy chains are separated by short linking sequences before the light chains j bind.

Each antibody domain is a 110AA immunoglobulin fold domain, a common and very stable motif constructed of two beta sandwich fold inclined at around 30˚to one another and packed together.

Each domain consists of a pair of β-sheets; one with 3 strands and one with 5 strands. A single covalent disulphide bridge holds the 2 sheets together, which results in a rigid and very stable domain.

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2
Q

How are monoclonal antibodies produced?

A

Kohler and Milstein (1975) took immobilized B-cells from mice and fused them with myeloma cells (cancerous blood cells) to form Hybridomas secreting monoclonal antibodies.

They showed that each antibody had rearranged the germline genes to form individual clones to neutralize cancerous blood factors – monoclonal antibodies are created to target one specific antigen.

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3
Q

What are the crystallisable fragments of antibodies?

A

Fc - the constant region formed by the heavy chains

Fab(ulous) - a single arm of the Y which is antigen binding, comprising a full immunoglobulin domain made up of a light chain and half of what was the heavy chain.

Fv - a half of the Fab which contains the CDR and so determines the paratope.

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4
Q

What determines antibody specificity?

A

The variable regions of both light and heavy chains (VL and VH) contain three hypervariable regions referred to as complementarity determining regions (CDRs), which directly contact a portion of the antigen’s surface during binding.

As such, the variable region of each arm (Fv) contains 6 CDRs – 3 from the light chain and 3 from the heavy chain

Glycosylation in the Fc fragment is also important for specificity.

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5
Q

How can antibodies directly lead to cell destruction?

A

Via complement dependent cytotoxicity (CDC), Antibody-dependent cell cytotoxicity (ADCC), triggering apoptosis or Fc-dependent phagocytosis.

These imply that cancer could be treated with antibodies raised against the tumour cells.

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6
Q

What is the complement pathway?

A

The complement cascade is initiated when multiple IgGs (or one or more IgMs) binds to a cell. This allows them to recruit c1q, which activates and recruits a bunch of proteins eventually leading to formation of a Membrane Attack Complex (MAC).

The MAC leads to cell destruction by creating a large membrane pore, effectively puncturing the cell allowing release of the cell contents and eventual death.

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7
Q

What is Antibody-dependent cell cytotoxicity?

A

ADCC is is initiated by the recognition of IgG-coated cells by Fcγ-Receptors, which are expressed by effector immune cells such as NK cells, macrophages, and neutrophils.

Crosslinking these receptors initiates signalling through immunoreceptor tyrosine-based activation motifs (ITAMs) or immunoreceptor tyrosine-based inhibitory motifs (ITIMs).

This begins many immune responses, but primarily cell lysis mediated by the delivery of perforin and granzymes to the cell by the immune effector cell.

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8
Q

What is Fc-dependent phagocytosis?

A

IgGs can stimulate various FcRs on immune effector cells to induce phagocytosis of the cell to which they are bound, leading to lysosomal degradation.

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9
Q

How were monoclonal antibodies first used in human therapy?

A

Initially, monoclonal antibodies were raised by injecting the antigen into a mouse, then isolating the mouse antibodies and using them as a boost to/replacement for the human antibodies.

However, this caused the human to raise human anti-mouse antibodies (HAMA) against them, thus causing a dangerous immune response.

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10
Q

How are genetic mouse antibodies made less immunogenic?

A

Chimeric antibodies (-xi-) were first used in which the mouse raised Fabs or Fvs were spliced onto human Fc domains. Using much more sequence than this leads to a loss of specificity, as structural regions throughout the antibody can have indirect effects on the paratope.

Antibodies are now often humanised (-zu-), with ~90% of the antibody being made with human sequence - essentially grafting the mouse-raised CDRs onto human antibodies but with strategical structural edits to preserve specificity.

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11
Q

What was the first chimeric antibody approved for treatment?

A

Rituximab, constructed from mouse Fv grafted onto otherwise human antibodies, was given FDA approval in 1997.

It targets CD20, a protein expressed only on B-cells - thus leading to their selective destruction. This is used as a treatment for B-cell lymphoma, destroying both malignant and normal B-cells which causes a period of B-cell depletion before normal ones are regenerated.

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12
Q

What effect does rituximab have on B cells?

A

It kills them through ADCC, CDC and by inducing apoptosis.

The relative importance of each of these mechanisms of action are not fully understood. They may act independently or in concert. What is clear from clinical studied and practise is that Rituxan is highly effective in depleting B-cell populations and in shrinking B-cell lymphomas.

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13
Q

What was the first humanised antibody approved for treatment?

A

Trastuzumab was constructed with CDRs from mouse and human IgG1, approved by the FDA in 1998 for treatment of breast cancer.

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14
Q

How does trastuzumab target breast cancer?

A

Trastuzumab is anti-HER2 (human epidermal growth factor receptor 2), an EGF family RTK that is a prominent oncogene in many epithelial tumours. It is mutated in 25% of breast cancer, and in those who do have HER2 mutations have significantly more aggressive cancers.

Trastuzumab targets the ligand binding domain, competetively inhibiting the receptor, and also stimulates ADCC and possibly other immune responses.

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15
Q

What is avastin?

A

Anti-VEGF antibody to target tumour-associated vasculature. An antibody humanised with IgG1 c-regions. First anti-angiogenesis therapy to increase survival in cancer patients, approved in 2004.

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16
Q

What significant advancement upon humanisation has been made in producing therapeutic monoclonal antibodies?

A

Completely ‘human’ antibodies (-u-) produced in transgenic mice possessing human immunoglobulin genes, leading to their production of totes human-y auntybods when presented with the antigen of choice.

17
Q

What was the first ‘human’ antibody approved for treatment?

A

Panitumumab, approved in 2006 for treatment of metastatic colorectal cancer. This targets EGFR to reduce oncogenic signalling.

Like trastuzumab, this is a competetive inhibitor of the ligand binding domain, and stimulated ADCC and possibly other immune responses.

18
Q

What is ipilimumab?

A

Trade name Yerboy, this is another ‘human’ antibody approved in 2011 and used to accentuate the immune response to cancer cells by inhibiting the CTLA-4 receptor which dowregulates immune response.

19
Q

How does CTLA-4 negatively regulate the immune system?

A

T-cells express CD28, which interacts with B7 proteins expressed by cells to stimulate T-cell activation and thus their cytotoxic response to cancer cells.

CTLA-4 competes with CD28 for the B7 ligands, and when it binds them it reduces T-cell activation as part of a natural checkpoint to prevent an overactive immune system.

20
Q

How do cancer cells affect CTLA-4 signalling? How is this targeted in therapy?

A

Cancer cells express antigens that bind to and activate CTLA-4 to reduce T-cell activation and ensure their own survival.

Ipilimumab targets the ligand binding region of CTLA-4, downregulating this pathway and promoting T-cell activation and anti-cancer effects.

21
Q

What other immune checkpoint is targeted in exploited by cancer cells?

A

The PD-1 checkpoint. The cancer cells expresses PD-L1 which interacts with the T-cell expressed PD-1 to produce a T-cell inhibiting response.

Similar to how ipilimumab targets CTLA-4, assorted antibodies are being trialled that bind to and inhibit PD-1 (including the ‘fully human’ nivolumab) and also to the PD-L1 component.

22
Q

What are immunoconjugates?

A

These are when antibodies are used as a delivery system for a therapeutic attached to the constant region by a linker sequence.

The therapeutic agent may be a pharmaceutically active agent, a toxin or a radioactive element for radioimmunotherapy.

In the case of ADEPT, a prodrug and accompanying enzyme is used.

23
Q

What is radioimmunotherapy?

A

Radioimmunotherapy involves the administration of
antibodies conjoined with a radionuclide directed specifically against tumor-associated antigens or against the tumor microenvironment for the treatment of local or diffuse tumors.

Targeted cells die owing to selfirradiation, cross-fire irradiation, or bystander effects. Radiation-sensitive targets in cells include the DNA, cytoplasm, and the membrane lipids. The main target is to cause catastrophic DNA damage.

Clinical success has mostly been achieved with radiolabeled antibodies against CD20 for the treatment of lymphoma.

24
Q

How do antibody-drug conjugates work?

A

ADCs are designed to target cell-specific antigens to deliver the drug to them. The antigen-ADC complex is internalized through receptor mediated endocytosis and, in most cases, is transported from early endosomes to lysosomes.

In the lysosome, internal conditions cause the cytotoxic component to dissociate and circulate freely in the cytoplasm.

Most cytotoxic components of current ADCs either bind to the minor groove of DNA and induce strand breakage or bind to tubulin, resulting in microtubule disruption, both processes leading to apoptosis.

25
Q

What are the requirements for ADC to be effective, and how does this pose an issue?

A

The drug has to be highly toxic/potent and non-immunogenic and the antibodies have to be incredibly specific to produce a relevant concentration at the target and not target other cells.

Also, the cytotoxic agent has to be non-toxic (dormant or inactive) during circulation in the blood to prevent off-target damage. There is linker technology to ensure that the ADC remains intact until it reaches the target and that the cytotoxic agent is functional once at the target site.

26
Q

What are immunotoxins?

A

Immunotoxins are a variant upon ADC where the antibody is conjugated to a protein toxin, such as ricin or pseudomonass/diptheria derived toxins.

27
Q

What antibody fragments have been genetically engineered?

A

Fab’ - A single Fab fragment.

F(ab’)2 - Two Fab fragments connected by the same hinge region, essentially just missing the Fc.

scFv - A single noncovalent heterodimer Fv produced from one chain by linking the terminals of a light and heavy chain by a linker. (dsFvs can be used which are only linked by ds bonds)

(scFv)2 - two scFvs linked by a longer linker region.

Minibodies - two scFv fragments linked by a third hemi-Ig domain, the first constant region, conserving the hinge region.

Diabodies - Two scFv fragments forming a single rigid Ig domain with a binding region on either side.

28
Q

How are specific scFvs made using hybridomas?

A

To make them the hybridomas are usually produced normally, and the relevant mRNA extracted and used to produce a cDNA template which can be modified and be recombinantly expressed; scFvs ccan be produced in functional form on filamentous bacteriophage, which infect E. coli.

The linker region used to connect the two fragments is generally glycine rich for stability, and contains serine or threonine to provide solubility.

29
Q

How can specific scFvs be made without hybridomas?

A

Antibody fragments can be generated as phage libraries which usually contain 107 -1010 specificities (i.e. millions of antibodies. This allows for natural variation to develop in its specificity, which due to the incredibly huge population of a bacteriophage culture produces any specificity you might want.

Inserting the gene into to the gene encoding for pIII coat protein of a non-lytic filamentous phage and expression as a fusion protein on the virion surface allows the library to be queried by antigen affinity chromatography without disturbing the infectivity of the phage.

30
Q

What is a CAR?

A

One of those things people use to DRIVE places. Y’know, with the wheels and shit.

31
Q

What are chimeric antigen receptors?

A

CARs are artificial T-cell receptors designed to stimulate T-cells to attack tumour cells.

They are composed of an N-terminal scFv specific to tumour antigens and linker region (ectodomain), a transmembrane helix and then a T-cell activating domain taken from receptors similar to FcγRs (most often CD3-zeta) forms the endodomain.

They use an N-terminal signal sequence to direct the ribsome to the ER for cotranslational deposition to ensure correct folding.

32
Q

How are CARs used?

A

The patients T-cells are isolated from a blood sample and genetically modified to express the fusion protein. These are reintroduced into the patient where they are then activated by cancer cells.

33
Q

What are BiTEs?

A

Bi-specific T-cell engagers are (scFv)2 bodies (two short chain variable fragments (scFv) joined by a flexible linker).

One of the ends is specific to tumour cell antigens while the other is specific to the T-cell receptor CD3, the binding of which activates T-cells and their cytotoxic response.

34
Q

What BiTE is currently in use?

A

Blinatumomab is a BiTE which targets the CD19 antigen present on B-cells, leading to indiscriminate B-cell destruction (similar to rituximab).

This is used as a second-line ALL treatment, and is in trials (promising) for non-hodgkins lymphoma.

35
Q

What illustrates the potential dangers of antibody mediated therapies?

A

In 2006 a trial for TGN1412, a CD28 targeting antibody, led to the severe inflammatory reaction and multiple organ failure in six men as it overstimulated the immune system leading to a cytokine storm.