Analyzing Cell, Molecules and Systems 1 Flashcards

1
Q

What is a cell culture?

A

refers to the removal of cells from an organism, and promoting their subsequent growth in a favorable artificial environment

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2
Q

What are the types of cell culture?

A

primary cell culture

established or continuous cell culture

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3
Q

What is a primary cell culture?

A

derived directly from animal
involves enzymatic and/or mechanical disruption of the tissue and some selection steps to isolate the cells of interest form a heterogenous population

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4
Q

How long do primary cell cultures survive for?

A

finite period of time

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5
Q

What are some examples of primary cell cultures?

A

primary neurons, cardiomyocytes

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6
Q

What is an established or continuous cell line?

A

primary culture that has been made immortal by transformation, most commonly tumor derived or transformed with a virus

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7
Q

What are examples of a established cell line?

A

SH-SY-5Y (human neuroblastoma derived), CHO, Hela

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8
Q

What are the advantages of cell cultures?

A
  • study of cell behavior without complexity/variation from live animals
  • cell characteristics maintained over several generations
  • control of growth environment leads to uniformity of sample
  • cultures can be exposed to reagents or protective agents
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9
Q

What are the disadvantages of cell cultures?

A
  • need to develop/ standardize techniques to maintain healthy cells
  • quantity of material is limited
  • dedifferentiation and selection may occur, altering original cellular mechanism/pathway
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10
Q

What are the applications of cell cultures?

A
  • basic science research on cell/gene/protein function
  • simulation of disease in vitro
  • testing of drugs/vaccines/ chemicals
  • chromosomal or genetic analysis
  • production of biological products
  • regenerative medicine
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11
Q

What is protein purification used for?

A

to study the unique structure and function of individual proteins

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12
Q

in subcellular fractionation, what happens to the tissues?

A

mechanical blending

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13
Q

What does the homogenate do in subcellular fractionation?

A

suspension of different cell types

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14
Q

What does centrifugation do in subcellular fractionation?

A

separate different cell types based on size and density

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15
Q

What does lysis of cells do in subcellular fractionation?

A

osmotic shock, ultrasonic vibration, mechanical blending, forcing through small orifice

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16
Q

What does ultracentrifugation do in subcellular fractionation?

A

separate organelles

17
Q

What is column chromatography?

A

a column is packed, and a sample is added, followed by a solvent which separates the sample to get desired products

18
Q

What are the three types of column chromatography?

A

ion-exchange
gel-filtration: size based
affinity: substates bind to protein

19
Q

What are techniques used to analyze proteins?

A

SDS -PAGE
western blotting
ELISA
mass spectrometry

20
Q

What is SDS

A

largely hydrophobic with negative charge

unfolds proteins and gives all proteins uniform charge

21
Q

What does beta mercapatoethanol do?

A

reduces disulfides

22
Q

What can SDS PAGE do?

A

visualize separated proteins with stains/dyes

23
Q

What does western blotting do?

A

analyzing specific/known proteins using antigens

24
Q

What does ELISA do?

A

tests for the levels of specific antigen or antibody concentrations in biological samples using a corresponding antibody or antigen

25
Q

What is indirect ELISA?

A

measures the amount of antibody in a sample

26
Q

What is sandwich ELISA?

A

measures the amount of an antigen in a sample

27
Q

What does mass spectrometry do?

A

identify unknown proteins

28
Q

What does the pellet contain after low speed centrifugation?

A

Whole cells
Nuclei
Cytoskeleton

29
Q

What does the pellet contain after medium speed centrifugation?

A

Mitochondria
Lysosomes
Peroxisomes

30
Q

What does the pellet contain after high speed centrifugation

A

Microsomes

Small vesicles.

31
Q

What does the pellet contain after very high speed centrifugation?

A

Ribosomes
Viruses
Large macromolecules