7/8: Antibody diversity and B cell development Flashcards

1
Q

how is the antigen binding pocket formed

A
  • junction of the heavy and light chain variable regions

- rearrangement of chromosomal DNA to create the exon encoding it

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2
Q

how does each b cell make a unique receptor

A

rearrangement and mutation of the germline DNA

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3
Q

what is the only isotype generated at first

A

IgM

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4
Q

what is tolerance

A

absence of immune response to own antigens

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5
Q

steps in B cell development

A
  • generation of b cell receptors in bone marrow
  • negative selection in the bone marrow
  • migration of b cells to peripheral lymphoid organs and activation
  • antibody secretion and memory cells in bone marrow and lymphoid tissues
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6
Q

how does each b cell develop receptors (antibodies) that can bind to a single epitope different than the epitope recognized by other b cells

A

during development in the bone marrow –> splicing its chromosomal DNA to create new coding sequences for the antigen binding pocket exon

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7
Q

how is the region of the antibody gene that binds the epitope generated

A

by a semi-random rearrangement and combining of gene segments –> different exons for the antibody chains within each b cell

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8
Q

multiple germline gene exons

A

both heavy and light chains may be encoded by multiple variable region DNA segments that are spliced together to form the variable region exon

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9
Q

H and L chain combinations

A

the antigen binding site is formed by the interaction of both chains, and any given H chain can dimerize with any given L chain

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10
Q

imprecise joining of segments

A

during somatic rearrangement, the gene segments for a variable region can be spliced together using any of several nucleotides

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11
Q

random insertion of bases

A

during splicing, nucleotide bases can be randomly inserted into the splice junction, thereby changing the codon frame

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12
Q

somatic hypermutation

A

areas within the variable regions which are subject to germline base substitutions during cell division –> the only diversity mechanism that occurs after a b cell encounters its specific antigen

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13
Q

what has to happen for a b cell to survive and leave bone marrow

A

successful rearrangement of both heavy and light chain genes

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14
Q

multiple germline genes

A
  • many different gene segments and permits rearrangement

- great diversity can be achieved

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15
Q

H-L chain combinations

A
  • heavy chain rearranges independently of the light chain
  • by combining different H and L chains, each with own variable region rearrangements, can generate antigen binding pockets of various specificity
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16
Q

3 regions in antibody genes

A

V, D, and J segments (plus constant region exons)

17
Q

VDJ gene rearrangement

A

bringing segments together through splicing

18
Q

imprecise joining (junctional flexibility)

A
  • arbitrarily splicing nucleic acids together within a region –> different reading frames generated –> different amino acid structure at the antigen binding pocket
  • occurs at all VDJ junctions during recombination
19
Q

random base insertion (or P nucleotide addition)

A
  • during recombination of VDJ segments, nucleic acids can be randomly inserted into the junction
  • generates a different amino acid structure at the antigen binding pocket
20
Q

what is allelic exclusion

A

-rearrangement of the antibody gene DNA is a random event that occurs only on one chromosome for each heavy or light chain genes

21
Q

what does allelic exclusion assure

A

that each individual b cell generates only a single antibody molecule rather than expressing the genes from both chromosomes (each b cell produces identical antibodies)

22
Q

does the heavy or light chain rearrange first

A

heavy chain, then light chain

23
Q

does the choice of heavy chain VDJ region influence which light chain V and J regions will be selected

24
Q

what does RAG stand for

A

recombination activating genes

25
what do RAG proteins/enzymes do
- recognize conserved sequences flanking each gene segment - bend the DNA strand such that the proteins interact - cleave out the intervening DNA sequences
26
what happens if an animal is missing RAG
severely immunocompromised
27
why is IgM the first antibody produced by b cells
it is encoded immediately adjacent to the VDJ genes
28
how are IgM and IgD formed (mechanism)
via differential splicing
29
what are germinal centers
contain proliferating b cells
30
steps in b cell development
- mature in the bone marrow - circulate through the secondary lymphoid tissues - form germinal centers - plasma cells leave and reenter circulation - maturation, isotype switching, somatic hypermutation
31
when do b cells convert to plasma cells
if it encounters its antigen and receives t cell help (cytokines)
32
what does activation after converting b cells to plasma cells result in
isotype switching to secrete IgG or IgA
33
what does exposure to antigen in the periphery result in for a b cell
- activation and cell division - differentiation into plasma cells - class switching and somatic hypermutation - selection for receptor specificity with greater affinity - differentiation into memory b cells
34
what does all activation of b cells and subsequent changes in DNA or RNA processing in the periphery require
exposure to antigen
35
what needs to happen for b cells to multiply and secrete IgM
stimulation by antigen-specific t cells
36
what does alternative splicing yield
membrane IgM (BCR) or secretory IgM