6.3 and 6.4 Flashcards
Average human chromosome nucleotide
250 million
Transcription factors
turn genes on or off
Restriction enzymes
cut DNA at particular sites
Sequence-specific DNA-binding proteins
Restriction enzymes or transcription factors
Catabolite gene activator protein (CAP)
recognize specific base-pair sequences in major groove of double helix
Proteins can access genetic info of DNA
without dissembling the double helix
Unwinding of DNA
exposes a single sequence of bases on each of two strands
Prokaryotes DNA
double stranded, closed circular chromosome
Eukaryotes DNA
double-stranded linear chromosomes
Virus DNA
single or double stranded, circular, or linear
Retroviruses (Polio and AIDS) genetic material
use ribonucleic acid (RNA)
RNA sugar
ribose
RNA length
fewer nucleotides than DNA
RNA strands
flexible and some regions can fold back and form base pairs with other parts of molecule
RNA is ____ stable than DNA
less
Complementary base pairing ensures
semi-conservative replication
SEmiconservative replication
copying in which one strand of each new double helix is conserved from the parent molecule and the other is completely new
Conservative replication
one helix is completely conserved while the other helix is made of two new strands
Dispersive replication
both daughter helix’s would contain new and parent material
Matthew Meselson and Franklin Stahl
In 1958, confirmed the semiconservative nature of DNA
Control in Meselson and Stahl experiment
All nitrogen was in normal isotope N14
During S-phase of interphase
cell replicates the double helix semiconservatibely
DNA polymerase
enzyme that forms a new DNA strand during replication by adding nucleotides reverse complementary to a template
Arthur Kornberg
purified components of the replication mechanism
1. DNA template
2. Primer
3. Nucleotide triphosphates
dNTP
high energy phosphate bonds that is need to synthesize every DNA molecule
Primer
short, preexisiting DNA oligonucleotide or RNA molecule to which nucleotides can be added by DNA polymerase
DNA polymerase cannot
establish the first link in a new chain (need to start with primer)
Stages of replication
Initiation and elogation
Initiation
proteins open up the double helix and prepare it for complementary base pairing
elongation
proteins connect the correct sequence of nucleotides on both newly formed DNA helix
Origin of replication
short sequence of nucleotides where DNA replication initiates
Initiator protein binds to origin and attracts
DNA helicase
DNA helicase
enzyme that unwinds the double helix
DNA polymerase III
adds nucleotides to the 3’ end of a preexisting strand of nucleic acid
Living cells need ____ for replication
RNA primers
Primase
synthesize RNA primer
DNA polymerase III catalyzes
polymerization
polymerization
joining of a new nucleotide to the preceding nucleotide through the formation of a phosphodiester bond
DNA polymerase molecule moves along
anti-parallel template (3’-to-5’ direction)
DNA construction moves in
5’-to-3’ direction
Leading strand
DNA strand replicated continuously 5’ to 3’ toward the unwinding Y-shaped replication fork
Lagging strand
discontinuously replicated t-to3 direction
Okazaki fragments
small fragment (about 1000 bases) joined after synthesis to form lagging strand
DNA polymerase I
replace the RNA primer of the previously made Okazaki fragment with DNA
DNA ligase
joins Okazaki fragments into a continuous strand of DNA
Replication is
bidirectional
Supercoiling
Additional twisting of the DNA molecule caused by movement of the replication fork during unwinding
Toposimoerase
relaxes supercoils by breaking, unwinding and suturing the DNA by separate (nicking) daughter chromosomes
Telomeres
Specialized terminal structures on eukaryotic chromosomes that ensure maintenance and accurate replication of the two ends of each linear chromosome