WK - Ecological Principles II Flashcards

1
Q

What are the types of diversity in microbial ecology? (3)

A
  • Alpha diversity: Species richness within a single sample.
  • Beta diversity: Differences in species composition between samples.
  • Gamma diversity: Total species richness across multiple samples within a landscape.
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2
Q

What is the Latitudinal Diversity Gradient? (2)

A
  • Microbial diversity increases from the poles towards the equator.
  • This trend is similar to patterns seen in macroorganisms.
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3
Q

What is Biogeography?

A

The study of the distribution of species in space and time

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4
Q

What factors influence the distribution of dust-associated bacteria and fungi? (2)

A
  • acterial distribution (NMDS) is negatively correlated with soil pH.
  • Fungal distribution (NMDS) is positively correlated with mean annual precipitation.
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5
Q

What characterises Primary Succession? (5)

A
  • Starts with a barren landscape, such as bare rock or sand.
  • Pioneer species such as lichens and mosses colonize the area.
  • These species help create soil and conditions for other species to establish.
  • Over time, the community becomes more complex, with intermediate species like grasses and shrubs.
  • Eventually, a climax community develops, which is a stable community that is resistant to further change.
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6
Q

What is Secondary Succession? (3)

A
  • Occurs after a disturbance where soil remains intact.
  • Starts with intermediate species, not pioneers.
  • Climax community may differ from the original due to the disturbance.
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7
Q

What happens during Glacial Retreat and Primary Succession? (4)

A
  • Retreating glaciers leave bare rock.
  • Nitrogen-fixing pioneer species (e.g., cyanobacteria, lichens) colonize first.
  • Soil formation allows intermediate species to establish.
  • A climax community develops over time.
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8
Q

What are examples of Pioneer Species and Consortia? (5)

A
  • Cyanobacteria: These photosynthetic bacteria are often the first organisms to colonize bare rock. They can fix nitrogen, which is essential for plant growth.
  • Algae: Algae, such as green algae and diatoms, can also colonize bare rock. They contribute to the formation of organic matter and provide food for other organisms.
  • Fungi: Fungi form symbiotic relationships with algae, forming lichens. Lichens can break down rock and create soil.
  • Lichens: Lichens are composite organisms consisting of a fungus and an alga. They are very resistant to harsh conditions and can colonize bare rock.
  • Mosses and liverworts: These non-vascular plants can colonize moist areas and help stabilize soil.
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9
Q

What are key findings in Community Development during succession? (3)

A
  • Richness: Increases in functional gene diversity (eggNOG, CAZy, NCyc) with soil age.
  • Relative Abundance: Changes over time, e.g., increase in Alphaproteobacteria.
  • Functional Potential: Expands as the community diversifies and adapts.
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10
Q

What are the stages of microbial succession in secondary succession? (3)

A
  • Early Stage: Dominated by low diversity with Bifidobacterium and Enterobacteriaceae.
  • Intermediate Stage: Increase in genera like Clostridium XVIII and Escherichia. Decrease in Bfidobacterium.
  • Late Stage: Higher diversity with abundant Bacteroides, Faecalibacterium, and Ruminococcus.
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11
Q

What are Emergent Properties in microbial communities? (2)

A
  • Functions arising from interactions of individuals.
  • Can exceed the sum of individual capabilities (e.g., synergistic pesticide degradation).

Show synergetic properties: E.g. one microbe might produce an enzyme that breaks down a pesticide, while another microbe might provide the necessary nutrients for the first microbe to grow and function.

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12
Q

What is Facilitation and Degradation efficiency?

A
  • Facilitation: Growth of one bacterial species can be enhanced by another (e.g., At’s growth is supported by the presence of Ct), suggesting cooperative interactions.
  • Degradation Efficiency: Certain combinations of bacterial species show higher efficiency in degrading toxic metals, indicating synergistic effects.
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13
Q
A
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13
Q

What are the impacts of Biological Invasions on microbial communities? (2)

A
  • Introduction to new environments can lead to proliferation and persistence.
  • Amplified by climate change and globalization.
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14
Q

What is an example of a Multispecies Invasion?

A

Batrachochytrium dendrobatidis (Bd):

  • A fungal pathogen causing global amphibian declines, particularly outside its endemic range in Asia.
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15
Q

What are the 4 main types of disturbances?

A

Disturbances: physical

  • Alters the physical soil structure
  • Changes water and oxygen gradients
  • Rips apart mycelial networks
  • Succession

Disturbances: chemical

  • Can impact microbial physiology and growth
  • Reduces biodiversity of other organisms (emergent properties)
  • May select for AbR

**Disturbances: nutrient pulses **

  • Nutrient pulses may facilitate microbial invasion
  • Alters biogeochemistry and related functions

Disturbances: monoculture

  • Reduced biodiversity (organisms and chemistry)
16
Q

What are the impacts of disturbances on microbial communities? (4)

A
  • Increased Copiotrophic Microbes: Resource pulses from disturbances favor copiotrophic microbes, which thrive in nutrient-rich environments, outcompeting oligotrophic microbes.
  • Altered Fungal Abundance: Disturbances can either increase or decrease fungal abundance, depending on the disturbance type and fungal taxa involved.
  • Shifts in Community Composition: Changes in relative abundance of taxa alter overall community structure.
  • Changes in Microbial Functions: Disturbances impact functional diversity, affecting processes like nutrient cycling, decomposition, and carbon sequestration.
17
Q

What are the effects of industrial agriculture practices on soil health? (4)

A
  • Crop Residue Removal: Reduces organic matter input and limits soil carbon sequestration.
  • Monocropping: Continuous cultivation of a single crop depletes soil nutrients, lowers biodiversity, and heightens pest and disease risks.
  • Heavy Tillage: Damages soil structure, decreases organic matter, and leads to increased erosion.
  • Chemical Inputs: Overuse of fertilizers and pesticides harms soil microorganisms, reduces biodiversity, and contributes to water pollution.
18
Q

What are common conservation agriculture practices? (4)

A
  • Crop Rotation: Improves soil health by increasing nutrient cycling, reducing pest and disease pressure, and improving soil structure.
  • Cover Cropping: Planting cover crops between main crop seasons can increase organic matter, reduce erosion, and suppress weeds.
  • Reduced Tillage: Minimises soil disturbance, conserve moisture, and protect soil structure.
  • Organic Amendments: Adding organic amendments, such as compost and manure, can improve soil fertility, structure, and microbial activity.
19
Q

How does coprophagy influence microbial succession? (3)

A
  • Coprophagy: The consumption of fecal matter, common in animals like rodents, rabbits, and insects.
  • Microbial Transfer: Facilitates the transfer of microbes between individuals and across generations.
  • Gut Microbiome Shaping: Plays a key role in establishing and maintaining the gut microbiome.