Week Three Objectives Flashcards
How is dietary folate converted to an active cofactor?
Folate comes from diet
Folate has poly-glutamate tail that is digested down to mono-glutamate in gut by Dihydrofolate reductase (DHFR)
Folate is reduced to N5-methyl tetrahydrofolate in intestinal epithelial cells by DHFR
FH4 + formate –> N10 formyl FH4
What is the pathway from THF to methylcobalamin?
THF + formate –> 10-formyl THF
reduced to
5,10 Methenyl THF
reduced to
5,10- Methylene THF
reduced to (irreversible methyl trap)
5-Methyl THF (+ cobalamin) –> methylcobalamin
What amino acids can help produce folate intermediates?
THF + histidine –> 5,10-methenyl THF
THF + serine –> 5,10-methylene THF + glycine
*Serine is the most important contributor to the one carbon pool
*Serine, glycine, choline, histidine, and formate contribute to the one carbon pool
*Thymidine nucleotide, purine bases, methionine, and SAM are PRODUCTS of one carbon donations
Describe the one carbon transfer in thymidine nucleotide synthesis and what might be a good anti-cancer therapy
Thymidylate Synthase(TS) reduces Methylene THF to methy during its transfer to dUMP to make dTMP.
This leaves THF in DHF, which then gets reduced to THF by DHFR which can then accepts another one carbon group from serine (hydroxymethlytransferase) to recycle methylene THF
The cycle continues producing more dTMP
**Can inhibit TS or DHFR to target pathway in anti-cancer therapy**
How is dietary Cobalamin converted into a cofactor?
aka Vitamin B12
Dietary B12 first binds to R-binder proteins secreted in the stomach
As R binders are digested, they bind intrinsic factors
This complex is taken up by intestinal epithelial cells and is tranported in the blood as a complex with transcobalamin II protein
What are the two Cobalamin Reactions?
- Adenosyl cobalamin is a cofactor for the rxn where methylmalonyl CoA mutase convers methylmalonyl CoA (from branched/ odd chain A.A.) to Succinyl Co A in order to enter TCA cycle
- Methionine synthase catalyzes the transfer of methy from methylcobalamin to homocysteine to make methionine.
Methione can vind adesoine nucleoside to become SAM. SAM donates methyl group to numerous substrate including precursors to neurtransmitters
Spinda bifida
Folate deficiency
Neural tube development disorder
Heredity Folate Malabsorption
inherited mutation in the proton coupled folate transporter (PCFT)
which is main transporter for dietary folate
Causes a functional folate deficiency despite adequate dietary folate
Megoloblast anemia
folate deficiency
fewer red blood cells, but are larger than normal
lack of thymidine nucleotides delays DNA synthesis, cell mass grows but genome doesn’t replicate, delay in cell division
Pernicious anemia
(megaloblastic anemia + neuro problems)
B12 deficiency
Auto immune disease attack parietal cells, intrisic factor can’t interact with cobalamin so can’t get uptake
Symptoms: megaloblastic anemia, big beefy tounge, autoimmue gastritis, and NEURO EFFECTS (demylination)
Hyperhomocysteinemia
mutations in methionine synthase
linked to cardiovascular and neurological problems
Why is folate metabolism a treatment for cancer?
Cancer cells divide rapidly and have high requirement for deoxynucleotides
Methotrexate is a folate analog that inhibits DHFR
5-FLuorouracil is a uracil analog that inhibits TS
In addition to cancer cells these drugs also kill other rapidly dividing cells- blod cells, epithelial cells, and hair follicles
What is the methyl trap hypothesis?
The only metabolic fate of 5-methyl THF is to loose its methyl to cobalamin
In dietary or functional deficiency of cobalamin, folate becomes “trapped” as 5-methyl THF thus unable to particpate in other one carbon transfers
*Cobalamin deficiency results in a functional folate deficiency becase all folate gets trapped as 5-methyl THF
What are common properities of infectious disease?
Micro organisms
acute onset
transmission
immune response
Common modes of transmission of infectious diseases?
Person to person: air borne, direct contact, sexual transmission
Zooenotic (vector borne)
Soil Borne
Common Source (contaminated water supple, food borne)
What did the germ theory of disease demonstrate?
demonstrated link between microbs and infectious disease
What are Koch’s Postulates?
- Suspect pathogen must be in ALL disease cases, and absent in healthy animals
- Grow pathogen in pure culture **
- Cells from pure culutre must cause disease in healthy animal**
- Suspected pathogen must be re-isolated and shwon to be the same as orginal pathogen
Obstacles: need animal model, and some stuff dificult to grow in culutre
The gene theory of disease
Microbial infections that lead to disease can be viewed as an arms race for replication that in the purest sense is related to the survival of one set of genetic information at the expense of another
Griffith’s Experiment
Smooth (capsule)/ Rough (no capusle)
Live S cells killed, Dead S cells didn’t
Live R cells didn’t
heat killed S cells + live R cells killed
*virulence factors- any molecule of a microogransim that aids in its ability to establish and maintain pathogenic infection
Common Bacterial morphologies
Coccus
Rod
Spirillum
Spirochete
Budding/ appendage bacteria (stalk/ hypha)
Filamentous bacteria
How do you perform and interpret a Gram Stain?
Prepare smear: spread culutre in thin film over slide, dry
Heat fix and stain with crystail violet (all cells purple)
Add iodine (crystalizes violet into wall)
Decolorize with alcohol (gram+ are purple, gram- are colorless)
Counter stain with safranin (gram+ are purple, gram- are pink)
Differences found in prokaryotic and eukaryotic cell structures
Prokaryotic
Aggregated mass of DNA (nucleoid)
Plasmids
Cell wall/ peptidoglycan
No membrane bound organelles
DNA one chromosome, circular, lack histones
Cell division by fission or budding
Eukaryotic
Membrane-enclosed nucleous
No-plamids
No cell wall
Membrane bound organelles
DNA multiple chromosomes, linear, contain histones
Cell division by mitosis or meiosis
Process of binary fission
cell elongation, septum formation, completion of septum, formation of walls, cell seperation
**Populations grow EXPONENTIALLY**
3 enzymes needed for Peptidoglycan Synthesis
Autolysin
Transglycosylase (to link sugars)
Transpeptidase to like peptides
*Autolysis occurs unless new cell wall precursors are spliced into existing peptidoglycan to prevent a break in peptidoglycan integriaty as splice point
**Penicillin binds and block activity of transpeptidase
Describe Glycogen Structure
Glycogen is a polymer of glucose
Two types of carbon carbon bonds in glycogen
(1: 4) linear chains
(1: 6) make branch points
Glycogen syntase adds UDP-glucose to chain until 11 units long
Branching enzyme cleaves a piece of chain off and attaches it in a 1:6 glycosidic linkage- both braches are further extended
Glycogens function in liver and and other tissues?
Glycogen is used as a glucose storage for most cell types
In heart & Skeletal- intracellular glucose buffer, buffer for glucose 6-phosphate for use within cells (depends on how much getting from blood, and how much cell is doing). When cleaving glycogen its use is for ONLY that cell
Liver- Serves as glucose buffer for BLOOD, regulates whole body glucose homeostasis. Used for hepatocyte but is also excreted in blood
Enzymes in glycogenogenesis
Glycogen Synthase- adds UDP glucose on to glycogen core
4:6 transferase (branching enzymes) cleaves a piece of chain off and attaches it in a 1:6 glycosidic linkages
Both branches extended
Advantages of branching in glycogen?
Increases solubility
Make more active ends so glycogenolysis and glycogenesis can happen rapidly
Enzymes in glycogen degradation
Glycogen phosphorylase- cleaves unites of glucose from glycogen chains and adds inorganic phosphate to make glucose-1-phosphate (but can’t cleave glucose with in four units of branch point)
Debranching enzyme- two activities
(4:4 transferase activity) cleaves a 1:4 bond and transfers 3 glucose units to the end of another chain in 1:4 bond
(alpha-1,6-glucosidase activity) hydrolyzes the remaing glucose’s 1:6 bond to release glucose
Regulation of glycogen metabolism Fed vs Fasted state
In Fed State: both are UNphosphorylated, glycogen phosphorylase is inactive, glycogen synthase is active
In Fasted State: both are PHOSPorylated, glycogen phosphorylase is active, glycogen synthase is inactive
Insulin (hepatocyte and skeletal) how it regulates glycogen metabolism
Insulin activates (phosphorylates) protein phosphatase-1 which dephosphorylates glycogen synthase (activating it)
Inhibits (phosphorylates) glycogen synthase kinase-3 (inactiving it)
Glucagon (hepatocyte only)/ Epinephrine beta regulation in glycogen metabolism
cAMP –> PKA –> phosphorylates glycogen synthase (inactive) and glycgoen phosphorylase kinase (active) –> which then phosphorylates glycogen phosphorylase (acitve) –> glycogenolysis –> GLUCOSE