Week 7&8 - Inflammation and Immunity Flashcards

1
Q

What are the two types of irreversible injury?

A

Apoptosis

Necrosis

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2
Q

What is necrosis?

A

uncontrolled cell growth
does not require energy
damages surrounding cells

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3
Q

what is coagulative necrosis?

A
dry gangrene
gangrene is coagulative necrosis in extremities 
lack of nuclei
ghost cell outlines
ischemia
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4
Q

what is liquefactive necrosis?

A
wet gangrene 
infection
in CNS due to ischemia (only place it doesn't cause coagulative)
cell proteins digested
pus (neutrophils)
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5
Q

what is caseous necrosis?

A

granulomas are a cause (however granulomas don’t always have necrosis)
complete loss of structure
will look like there are lots of blue, powdery grains in it
TB a main cause

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6
Q

what is fibrinoid necrosis?

A

in smooth muscle walls of arteries

eosinophilic/fibrinous deposits (bright, almost hot, pink)

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7
Q

what is fat necrosis?

A

fat undergoes necrosis
releases fat from cells
chalky deposits (white patches on histology)

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8
Q

what is apoptosis

A

controlled cell death
requires energy
everything remains bound in membranes

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9
Q

what are the two types of apoptotic initiation?

A

Intrinsic - aka mitochondrial pathway - related to growth factors
higher levels of pro apoptic BLC2 proteins than anti apoptotic - leads to caspase 9

Extrinsic - ligand binds to extracellular aspect of death domain receptors leading to intracellular conformational change
FAS - first apoptotic signal
TNF - tumour necrosis factor
these activate caspase 8

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10
Q

what happens when apoptosis is initiated

A

caspase 3, 6, 7 activated

apoptotic bodies form - eaten by phagocytes

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11
Q

what do necrosis/apoptosis look like on gel electrophoresis?

A

necrosis - smear

apoptosis - like rungs on a ladder

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12
Q

what is exudate?

A

composed of serum, fibrin, and white blood cells

what leaks from the bloodstream to a site of inflammation

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13
Q

what is a cytokine?

A

any small protein that is involved in cell signalling (not hormones)

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14
Q

what is a chemokine?

A

a type of cytokine. They are able to attract nearby cells, getting them to move to where they need to be. This can be either towards or away from the chemokine. This process is called chemotaxis.

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15
Q

What are integrins?

A

receptors

They’re important in adhesion between cells and the extracellular matrix

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16
Q

what are opsonins?

A

any molecule that has the ability to mark an antigen or dead cell as requiring phagocytosis. They bind to the cell or antigen and make it easier for phagocytes to reach the cells by overriding the charge repulsion between the phagocyte and the target

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17
Q

What is the complement system

A

a system of proteins that enhances the effects of antibodies and phagocytes to clear microbes and damaged cells.
part of the innate immune system
produced by the liver and circulated the blood

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18
Q

What is Substance P?

A

a polypeptide that acts as a neurotransmitter and a neuromodulator

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19
Q

what is inflammation?

A

the reaction of viving, vascularised tissue to injury

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20
Q

what are the primary lymphoid organs

A

Bone marrow - WHERE ALL B AND T CELLS ARE MADE

Thymus - where t cells develop

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21
Q

what are the secondary lymphoid organs?

A

lymph nodes and spleen

also tonsils and appendix

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22
Q

what is the anti-viral state?

A

produce interferon alpha and beta to tell neighbouring cells to start upregulating anti-viral proteins and downregulating RNA production and protein translation

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23
Q

What are PAMPs

A

Pathogen-associated molecular patterns

such as lipopolysaccharide

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24
Q

What are DAMPs

A

Damage-associated molecular patterns

such as DNA, ATP and RNA

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25
What are PRRs
Pattern recognition receptors Detect PAMPs and DAMPs e.g. toll-like receptors - 10 types TLR3 binds to double stranded viral RNA TLR4 binds to lipopolysaccharide, as found in bacterial cell walls TLR5 binds to flagellin, a protein found in bacterial flagella release cytokines like IL-1, IL-6 and TNF
26
why is cleavage of caspases important?
caspases cleave proteins, so need to be controlled. only want caspases to be activated when they need to be i.e. apoptosis so they are inactive and are cleaved to be activated
27
what diseases can inflammation worsen/cause?
``` Cancers Atherosclerosis Obesity, type II diabetes Neurodegenerative diseases stroke/myocardial infarct ```
28
which immune cells are found in the blood?
monocytes NK cells resident liver macrophages
29
which immune cells are found in tissues?
pericytes mast cells tissue macrophages dendritic cells (especially near blood vessels or surface barriers such as skin and GI tract)
30
Triggers of inflammation
Lack of self - Cell surface molecules that prevent immune attack e.g. MHC class I, complement inhibitors Perturbed cellular homeostasis (effector-triggered immunity) - e.g. ion balance Pattern triggered - PAMPs or DAMPs Mild physical trauma - degranulates mast cells - releases histamine - vasoactive - makes blood vessels leaky -dilation serotonin acts similarly to histamine - vasoactive
31
indicators of inflammation
``` redness swelling pain loss of function heat ```
32
types of exudate
Pus -Neutrophil and enzyme rich Fibrinous - Few cells, greyish sticky fibrin coating Serous - Few cells, serum-like, little fibrinogen/platelets Haemorrhagic - Vascular destruction
33
describe how immune cells get out of the blood to a site of inflammation
Margination is the process of neutrophils (and other white blood cells) accumulating near the vessel wall. Slow flow of blood along with the presence of more RBCs in inflammation leads to more margination. They then roll along the wall of the vessel. Histamine, DAMP and cytokines cause endothelium to expose sticky selectins on its surface. Rolling is associated with selectins. Cytokines increases surface adhesion molecules which firmly bind neutrophils. This is called firm adhesion and is associated with integrins. The process of a cell squeezing its way through the endothelium is called diapedesis. Neutrophils are guided out of the venule by pericytes. They then respond to DAMPs and have a transcriptional burst (respiratory burst as there is a generation of ATP), release cytokines, chemokines and growth factors and migrate around the tissue and screen it. Fibrin matrix helps them get around. Phagocytes need a matric to crawl over for directed migration.
34
neutrophil chemotaxic agents
``` Self - Coagulation products - Complement C5a, C3a - IL-8 Non-self -Bacterial endotoxin -F-met-leu-phe peptides (bacteria have this tag on all their peptides) ```
35
how do resident macrophages shield trivial injury?
"cloak" general wear and tear by covering it saves energy by stopping immune response too much injury and it cannot be covered - neutrophils undergo cell death and immune response is initiated
36
what molecules are involved with pain?
``` Bradykinin - makes nociceptors more sensitive to pain ATP serotonin histamine proteases Prostaglandins amines cytokines ```
37
what are the three activations of the complement system?
Classical pathway - when the body already has antibodies to an antigen mannose-binding lectin pathway - mannose is not found in human cells - lectin is a class of protein which binds to sugars alternative pathway - spontaneous activation of C3 - human cells deactivate it but pathogens don't
38
what happens when the complement system is activated?
all 3 form a C3 convertase which breaks it into C3a (changes blood vessel endothelium and degranulates mast cells) and C3b (opsonin) - C3b also activates C5b which activates the lytic pathway - leads to membrane attack complex MAC which makes pores in pathogen - swells and bursts
39
what are neutrophils?
most common WBC recruited rapidly good at killing but dies quickly makes up pus
40
what are macrophages?
``` differentiated monocytes Good at everything Multipurpose Can kill bacteria but only if activated involved in healing Clearance of dead cells. Will eat dying cells ANTIGEN PRESENTING CELLS ```
41
what are eosinophils
granulocytes, with granules containing DNAses and RNAses involved in allergy stain bright red bind to IgE on the surface of multicellular parasites, which causes them to degranulate and release compounds which are toxic perform ETosis (similar to NETosis)
42
what are basophils
BLOOD granules which release histamine and heparin when activated, causing vasodilatation. These cells act in allergies or parasite infections
43
what are mast cells
TISSUE granules which release histamine and heparin when activated, causing vasodilatation. These cells act in allergies or parasite infections
44
what are dendritic cells
differentiated monocytes phagocytes but not very good at it not very many of them MAIN ANTIGEN PRESENTING CELLS
45
what are natural killer cells
largely antiviral and anticancer, and kill cells that have been marked for killing by forming pores in them and inducing apoptosis attack cells which have downregulated MHC I because this is a common strategy of viruses to avoid detection
46
describe phagocytosis
engulfs pathogen to form phagosome - Lysosome fuses with phagosome - lysosome contains toxic products to kill/degrade pathogen such as proteases, nitric oxide and hypochlorite (only neutrophils) - Now called phagolysosome
47
difference between afferent and efferent lymphatics
Afferent lymphatics is where stuff comes into lymph node. | Efferent lymphatics is where stuff leaves the lymph node.
48
how are macrophages activated
- Activation can come from danger signalling or cytokines, especially interferon gamma - Interferon gamma is produced by a number of cells including T cells
49
what are NETs
Neutrophil extracellular traps the neutrophil can extrude its own genomic dna. This works well to trap pathogens which an prevent pathogen disseminating throughout the host and also its extremely inflammatory.
50
what are the possible outcomes of inflammation ?
RESOLUTION extravasation diminishes pro-inflammatory mediator are catabolised macrophage phagocytosis of apoptotic neutrophils (efferocytosis) triggers anti-inflammatory cytokine synthesis Stress hormones inhibition– cortisol, catecholamines, vagus nerve effects Anti-inflammatory cytokines attenuate sickness behaviours Immunoresolvant lipid mediators – lipoxins, resolvins, protectins from apoptotic neutrophils  Suppress extravasation and cytokine release  Stimulate macrophage clearance and efflux to lymph After resolution – epigenetic changes alter how some tissues and macrophages respond again to injury for weeks-months ORGANISATION tissue replaced with granulation tissue which can be problematic as sticky fibrin adhesions can stick serosal surfaces together e.g. bowel loops CHRONIC INFLAMMATION DEATH
51
describe the hazard gradient
Infection is very hazardous in sterile vital tissues/blood, compared with “friendly” microbes at epithelial surface such as in the gut Checkpoint model- in more vital tissues, fewer critical checkpoints can trigger inflammation * Extent of cell injury and resident macrophage density (cloaking) * Soluble vs particle (multiple PAMP, phagocytic processing) * Viability (bacterial/viral nucleic acid) * Virulence (system surveillance)
52
what happens when inflammation regulation goes wrong?
cytokine storm Vasodilation throughout body – blood pressure drops Hyperactivated inflammation but with suppression of the adaptive immune system – run out of immune cells etc – susceptible to another infection coagulation In sepsis, this happens in the whole body. Depletes clotting factor, inflammatory and immune cells and platelets in the blood. – unable to clot properly – disseminated intravascular coagulation – leads to capillary haemorrhages – bleeding all over the body into soft tissue Pro-inflammatory tissue damage – susceptible to secondary infections vicious cycles of tissue ischemia and necrosis
53
how can phagocytosis be avoided?
* Slippery prey – ie pneumococcus capsule -waxy surface difficult to phagocytose * Decoy foreign body such as sutures and catheters * Frustrated by slime – secreted by organisms which make it difficult for phagocytes to move around * Intracellular organisms evade - tuberculosis
54
how does chronic inflammation occur?
persistant infection presence of a foreign body such as a catheter autoimmune disease where the inflammation itself is the problem
55
what cells are most involved in acute/chronic inflammation
neutrophils most important in acute macrophages most important in chronic - have a role in the formation of new connective tissue and the remodelling of present connective tissue frustrated phagocytosis leads to granulomas
56
what are granulomas
a mass of granulation tissue formed after frustrated phagocytosis not vasularised - granulation tissue usually is body's way of walling off what it can't get rid of macrophages often form giant (multinucleated) cells if there is necrosis, it is caseous
57
what is an abscess?
granulation tissue around pus. it can heal or discharge in two ways 1 direction - sinus 2 directions - fistula
58
what is a pinoidal sinus?
a small hole in the skin that can become infected, forming an abscess
59
what is an inflammatory sinus?
a blind ending pit lined by granulation tissue that opens up onto an endothelial surface.
60
what is a fistula?
an abnormal linkage between 2 different epithelial surfaces. Can form between any 2 epithelia surfaces which can be linked. can happen in Crohn's disease
61
what is an ulcer?
when the top layers of the epithelium are lost from necrosis and lower layers are exposed, which then begin to be worn away themselves - open sore serious in the stomach as there is no basement membrane to heal from so it must come from the side and the conditions of the stomach make this difficult. can lead to perforating gastric ulcer - potentially fatal haemorrage If the loss isn’t full thickness this is called an EROSION
62
what do you call lymphocytes which haven't been activated?
naive cells
63
what do B and T cells arise from?
from haematopoietic stem cells (HSC) in bone marrow
64
describe B cells
• Once activated, become plasma cells • Plasma cells produce antibodies • Antibodies are Y-shaped soluble secreted molecules that circulate in body fluids o Bind to pathogens and kill them/mark them to be eaten/prevent them from spreading o Used in pregnancy tests, marking specific cells in the lab
65
describe T cells
* CD8+ cytotoxic T lymphocyte (CTL) – kills infected/mutated cells * CD4+ helper T cells (Th) – organise immune responses – produce different cytokines- differentiate into different types -Th1, Th2, Th17, Treg
66
what do B and T cells have in common?
T and B cells express receptors of random specificity – each T/B cell bears receptors of a single specificity- unique When the T/B cell binds to its specific antigen, it activates and proliferates Daughter cells express identical receptor to parent (hence clonal) Expanded population mediated immune responses and are maintained at higher precursor frequency- ready to respond next time
67
describe T and B cell receptors
they have: • Variable regions at tip which bind to antigen • Constant regions which do not vary The BCR is a Y-shaped receptor with a heavy chain and 2 light chains, the variable regions with antigen binding sites being on the end of the light chains. The TCR has an alpha chain and a beta chain, the variable regions with the antigen binding sites occurring on the end of both chains.
68
describe the structure of lymph nodes
lymphoid follicles around the edge (primary follicles with mostly B cells and secondary follicles that contain germinal centres with lots of proliferating B cells), then T cells in the parafollicular/paracortical area. In the centre there is the medulla, with blood vessels.
69
describe primary receptor diversity
there are multiple copies of 3 types of DNA sequence that contribute to the antigen-binding site: the variable (V) segment, diversity (D) segment, and joining (J) segment. Somatic recombination occurs - wherein one copy of each type of segment (so 1 V, 1 D, 1 J) are selected and expressed on any given lymphocyte. Light chain just V and J Because of how many segments there are in the germline, there are billions of possibilities of combination. This is combinatorial diversity - diversity, generated from combining different gene segments. there are also • Different Heavy/Light chain (BcR) combinations • Different alpha/beta chain (TcR) combinations Junctional diversity - Sometimes, the DNA breaking and rejoining involved in generating combinatorial diversity has mistakes - it’s a very inaccurate process. This allows new nucleotides to be inserted or present nucleotides to be lost as the “wrong” section is joined, or nucleotides have to be deleted by DNA repair machinery. Although these are technically mistakes, and they can cause frameshift or nonsense mutations that lead to the kind of non-functioning or poorly functioning lymphocytes that are killed off, it does massively increase the diversity of T and B cells available to us.
70
what are the three types of regeneration?
LABILE cells - renewal - constantly replacing themselves such as in the GI tract and skin STABLE cells - compensatory - such as in the liver and kidney, which aren’t constantly proliferating in the body’s normal homeostasis, but are capable of regenerating after injury and necrosis. Scarring will still happen if these mechanisms can’t keep up with the extent of the damage. PERMANENT cells - none - such as in cardiac myocytes or neurons - scar formation regeneration is tightly controlled by growth factors and physical stimuli from the matrix they sit in
71
what happens when a tissue cannot regenerate?
fibrous scar production (fibrosis) to patch damaged tissues
72
what are the stages of healing by scarring?
1. bleeding 2. clot formation 3. acute → chronic inflammation 4. fibroblast infiltration: neomatrix – matrix changes 5. angiogenesis – blood vessel growth; fibrillar collagen 6. scar maturation
73
what are the stages of scar formation?
1. fibroblast migration and proliferation 2. extracellular matrix deposition 3. tissue remodeling
74
describe fibroblasts
• resident mesenchymal cells – non-polar – don’t have an “up and down” • source of connective tissue • migration and proliferation triggered by growth factors • more production and less degradation • collagens – types 1-3 are fibrillar, type 4 is basement membrane also put down elastin, proteoglycans, glycoproteins
75
describe the remodelling of scars
The remodelling and maturation of the scar requires the newly formed ECM to be degraded by enzymes called matrix metalloproteinases (MMPs) The action of these MMPs are mediated by tissue inhibitors of metalloproteinases, or TIMPs
76
what is fibrosis?
very similar to scarring but it involves the thickening of the connective tissue in response to continuous injury. This can lead to the loss of function of the organ that it is attempting to protect. End stage scarring occurs when continued injury and progressive scarring leads to irreversible scarring that can render an organ non-functional such as that which we see in liver cirrhosis.
77
what does a BcR recognise?
recognise soluble antigen in its normal (native) form. Antigen can be sugar, lipid, chemical or protein
78
what does a TcR recognise?
has to have the antigen “presented” to them on Major Histocompatibility Complex (MHC) molecules on another cell
79
what happens to protein antigens?
chopped up into peptides and "loaded" onto MHC to be presented
80
what are haptens?
antigens which are sugars, lipids etc which need to be bound to a large carrier protein to illicit an immune response
81
describe Class I MHC
CD8+ only bind to antigens on this type (think 1 x 8 = 8) on all nucleated cells (not RBCs) except neurons Presents only endogenous antigens = from within cell Single alpha chain (with alpha 1, 2 and 3 subunits) and a beta 2 microglobulin polypeptide , alpha 1 and alpha 2 form a peptide-binding cleft
82
describe Class II MHC
CD4+ only bind to antigens on this type (think 2 x 4 = 8) Only on specialised Antigen Presenting Cells (APC) -most important of these are dendritic cells Presents exogenous antigens – from outside cell Extracellular pathogens, environmental proteins, food proteins, self proteins alpha and beta chain – form similar shape to class 1 but have alpha 1, alpha 2, beta 1 and beta 2 subunits. alpha and beta 1 form the cleft
83
Where do the peptides bind on MHC?
via anchor residues on the peptide binding cleft | each MHC molecule can only bind a few peptides
84
How do we get diversity in MHC
``` Polygeny – multiple independent genes for each MHC type Co-expression- alleles inherited from mother and father – potentially 6 different types of MHC class I and MHC class 2 being expressed Polymorphisms- multiple variants of each gene within the human population (most polymorphic of all genes – mainly in the peptide binding chain) ```
85
what is the downside of MHC diversity
major cause of transplant rejection | 1 in 100,000 chance of matching an unrelated donor
86
what does HLA stand for?
Human leukocyte antigen
87
what is central tolerance?
T cells are selected on their ability to bind to MHC negative selection - self antigens presented and if T and B cells bind too strongly then they receive apoptotic signals and die off - to prevent autoimmunity too weak - undergo apoptosis Low affinity – fail selection and die High affinity- negatively selected and deleted In the middle are positively selected and survive Some self-specific T cells escape death and become Tregs selection of T cells is very wasteful - 95% are delete
88
what is peripheral tolerance?
B and T cells require costimulation to be activated, not just an antigen if a naive lymphocyte responds to signal 1 (antigen) but does not receive signal 2 (costimulatory verification), it undergoes anergy (hyporesponsive to antigens) this is immune regulation from Tregs (regulatory T cells) also receive signal 3 – (tells T cell what kind of pathogen it is and comes from innate immune cells)
89
types of Tregs
``` Natural Tregs (nTregs) – recognise self antigens – arise in thymus Inducible Tregs (iTregs) – recognise self or environmental antigens – arise in periphery When activated, CD4+ Tregs switch off adaptive or innate immune responses o Produce cytokines that dampen immune responses (IL-10) ```
90
what does Th1 do?
``` T helper (CD4+) viruses and intracellular bacteria ```
91
what does Th2 do?
T helper (CD4+) parasitic worms and allergy IL-4, IL-5, IL-13
92
what does Th17 do?
``` T helper (CD4+) extracellular bacteria, fungi and yeast infections ```
93
what is amyloid
insoluble protein - build up of acute phase reactants - can polymerise and can be deposited around the body - component of alzheimer's
94
what is the order of activation of lymphocytes?
antigen presenting cell activate CD4+ which direct B cells and give costimulatory verification to CD8+
95
what is independent B cell activation?
they don’t require a T helper cell to activate them For T independent antigens, the costimulatory signals come from microbes, cytokines and APCs. This activation will cause the B cell to produce IgM, which is the dominant antibody in the initial immune response. This response is rapid
96
what is somatic hypermutation?
when a B cell is activated by a CD4+, it proliferates and its BcR genes undergo very high rates of mutation. Largely driven by substitutions of single bases in the heavy chain of the BCR and the variable “V” region of the light chain.
97
how do cytotoxic T cells kill?
Firstly, CTLs release cytotoxins like perforin and granzyme. Perforin forms a pore in the target cell, allowing the granzyme to enter. The granzyme is a protease enzyme that activates caspases to induce apoptosis. Secondly, they can use Fas ligation, where FAS is a ligand that binds to a FAS receptor. a method of directly stimulating the cells to undergo apoptosis.
98
what is affinity maturation?
the stronger binding B cells after somatic hypermutation are selected. Those with lower affinity die off This very important for those monomeric antibodies where you have just 2 binding sites like IgG, need to generate very strong binding antibodies.
99
what is class switching?
``` where CD4+ signals to the activated B cell to produce a different class of antibody only on constant region The B cell will produce IgM first, but will undergo gene rearrangement to produce a different one (IgG, IgA or IgE) depending on what is needed This can’t occur in T-independent activation, therefore you’ll just produce IgM from it ```
100
IgM
``` pentamer in structure (where the Y shaped proteins are the monomers making it up), making it the largest antibody. It’s the first to be released and isn’t very specific. 10 binding sites responsible for complement activation neutralise toxins in blood bind to Fc-alpha/mu ```
101
IgG
``` monomer (2 binding sites) responsible for complement activation antibody-dependent cell cytotoxicity (opsonizes for cytotoxic killing by NK cells) only antibody isotope that can cross the placenta neutralise toxins bind to Fc-gamma Extra mucosal 4 sub classes second to be released after IgM ```
102
IgE
monomer (2 binding sites) involved in activating innate immunity in the form of allergy by activating mast cells and basophils bind to Fc-epsilon
103
IgA
IgA is a dimer. (4 binding sites) neutralise toxins bind to Fc-alpha/mu Mucosal
104
IgD
monomer (2 binding sites) makes up a small percentage of antibodies - in blood activates basophils and mast cells
105
what is neutralisation?
blocking binding of toxin to receptor on tissue cells by antibodies (e.g. as in tetanus, diphtheria, cholera, flu)
106
What is type I sensitivity?
``` Classic allergy - antibody mediated Host has pre-existing IgE to allergen 2nd response involves cross-linking on mast cells which degranulates them Localised response o Hives, blisters, nasal discharge o Hayfever, asthma Systemic response o Anaphylaxis ```
107
what are allergens?
Proteins, often proteases Low molecular weight and highly soluble – diffuse into mucous Very stable – can survive in desiccated particle Contain peptides that can bind MHC class II (T cell priming
108
what is anaphylaxis?
``` Profound systemic response to allergens Vasodilatation due to histamine etc. Hypotension (low BP) OedemaBronchoconstriction (histamine, bradykinins) Treatment is symptomatic o Adrenaline o β-agonists o IV Fluids o Corticosteroids ```
109
what are autoimmune diseases?
failure of self-tolerance due to: • Genetic susceptibility • Environmental triggers
110
what is type II sensitivity?
IgM/IgG - antibody mediated bind to host cells - phagocytosis, antibody-dependent cellular cytotoxicity and complement-mediated lysis haemolytic anaemia/rhesus reaction/myasthenia gravis/graves disease
111
what is type III sensitivity?
Immune complexes (antibody+antigen) - antibody mediated Often deposited in tissues with high blood filtration pressure o Kidneys & joints o Skin & blood vessels Immune complex-mediated inflammation & tissue damage • Acute inflammation with inflammatory cell recruitment, platelet aggregation, vasodilatation, vasculitis, fibrinoid necrosis. SLE (systemic lupis erythematosis) - failure in self tolerance of B and T cells - DNA and RNA bind to receptors ``` Vasculitis  Glomerulonephritis  Pericarditis  Butterfly rash  Arthritis  Pleural effusions ```
112
what is type IV sensitivity?
delayed type - T cell mediated response 1-3 days after contact with antigen tuberculin - CD4+ and macrophage accumulation and associated cytokine expression IRN gamma and TNF leads to granuloma with lymphocytes around the outside
113
which sex is more likely to develop autoimmune diseases?
females - endocrine factors
114
how can T cell tolerance be bypassed?
Modification- neoantigen generated by binding of a pathogen to a self component Inflammation- immunostimulatory environment activates self-reactive T cells Molecular mimicry- antibodies of T cells generated in response to infection cross-react with self because the antigens are similar