Week 6 - Microbiology and Infection Flashcards
Which antibiotics should generally be used in severe/life-threatening infections?
Usually IV combination Rx (Beta lactam + gentamicin) initially
Use of protected Abx if risk of MDR
Prompt (<1 hour) administration
Describe the treatment of bacterial endocarditis
- Seek expert opinion on treatment of endocarditis, variety of national treatment guidelines that you can consult
- Should use bactericidal rather than static drugs, extended therapy of weeks rather than days is required
- Commonly used regimen for treatment of streptococcal endocarditis (most common cause) of a native heart valve is 4 weeks of benzylpenicillin combined with gentamicin for the first 2 weeks
- Although streptococci are intrinsically resistant to gentamicin, benzylpenicillin disrupts the cell wall and allows gentamicin to penetrate inside the cell = synergy
Why are CREs important to control?
- Plasmids can transfer resistance to other stories and species
- They can be efficiently transmitted in healthcare facilities
Which type of organism is not covered by any new antibiotics?
Opportunisitc gram -ves
How is malaria diagnosed?
- Antigen testing
- Done in UK - not used to interpreting malaria films
- Blood films (thick and thin)
- Thick - confirms presence of parasite, diagnoses malaria
- Blood onto slide, soluble dye added (lyses red cells), can see parasites
- Thin - diagnoses the type of malaria
- E.g. falciparum - cygnet ring/headphone inclusions
- Thick - confirms presence of parasite, diagnoses malaria
- PCR
- Usually done after diagnosis
What effect do antibiotics have on the colonic flora?
- Antibiotics dramaticaly alter the colonic flora
- Most of gut flora wiped out by antibiotics
- Minority species w/ resistance to antibiotics colonises gut
- Even after 2 years lack of gut flora diversity - susceptibility to C diff
What is the first choice of antibiotic in a complicated UTI?
Ciprofloxacin - higher risk of deterioration in complicated if treatment isn’t effective, resistance less common with ciprofloxacin
How should blood cultures be taken when dealing with a patient with possible bacterial endocarditis?
- 3 sets of blood cultures
- Taken from peripheral veins
- 10 mls of blood in each bottle
- 1 hour between first and last samples
- Meticulous sterile technique
- Taken prior to antibiotics
- Bacteraemia always present - no need to wait for fever, all/majority of cultures should be positive
Describe the pathogenesis of bacterial pneumonia
Normally -
- Lungs constantly exposed to pathogens, well-evolved protection mechanisms - innate and acquired immunity
- Below level of carina should be sterile (leads to gas exchange)
Pathogenesis of Pneumonia (consolidation of lung):
- Defect in host defence - immunosuppressed individuals, smokers (destroy macrophages)
- Large inoculum e.g. inhaled particles in air when infected individual coughs
- Increased virulence of pathogen - evades immune system
What is the aim of empirical antibiotic guidelines?
Promote efficacy and prudency
Protect rather than restrict antibiotics
Give an example of how antibiotic use can lead to antimicrobial resistance
- Co-amoxiclav
- Amoxicillin has some activity against gram positive organisms and anaerobes
- Addition of clavulanic acid strengthens activity against anaerobes and gram-negatives by mopping up the beta-lactamase produced by these organisms resulting in higher amoxicillin concentration at the site of infection
- If target (infection causing agent is streptococci) and co-amoxiclav is used, the collateral damage will be that anaerobes, coliforms etc. are wiped out
- Sensitive organisms are wiped out, leaves resistant organisms to overgrow
Which groups are most commonly affected by haemophilus influenzae?
- Older people
- Underlying lung disease
- Disturbed lung architecture - COPD, pulmonary fibrosis, cystic fibrosis
List the important predisposing risk factors for septic arthritis
Elderly
Pre-existing joint disease
Recent joint surgery or injection
Skin or soft tissue infection
Intravenous drug use
Indwelling catheters
Immunosuppression (including diabetes)
Describe methods of bite avoidance
Physical Avoidance
- Indoors
- AC, screens on doors and windows
- Impregnated (tucked underneath mattress before sun goes down) netting
- Permethrin
- Mosquito free
- Clothing
- Cover up (arms, legs, ankles, feet)
- Spray/soak clothing
Repellant:
- Deet
- 30% reapply every 4-6 hours
- 50% reapply every 6-8 hours
- Reapply more often if sweating, in water
- Makes you taste bad to mosquitoes - land but don’t bite
Describe the use of aseptic technique in infection control
Reduce activity in area
Keep exposure of a susceptible site to a minimum
Check sterile packs for evidence of damage or moisture
Ensure all fluid materials in date
Do not re-use single use items
Hand decontamination prior to procedures
Protect uniform/clothing with a disposable apron
Use sterile gloves
Appropriate waste disposal
Which antibiotics are considered safe in pregnancy?
- Most beta lactams
- Broad spectrum agents may be associated with NEC (necrotising enterocolitis) in premature infants
- Macrolides - respiratory tract infection
- Anti-tuberculants
What is the clinical significance of pseudomonas bacteria?
- Causes infections in immunocompromised
- Resistant to many antibiotics
Where are haemophilus bacteria usually found?
Inhabit upper respiratory tract, mouth, vagina and intestinal tract
Give examples of other coliforms
Klebsiella, Enterobacter
Describe the action of chloramphenicol
- Inhibits the 50S ribosome
- Excellent broad spectrum activity
Which bacteria are sensitive/resistant to doxycycline?
Highly sensitive - streptococcus, staphylococcus
Sensitive - haemophilus, neisseria
Minimally sensitive - enterococcus
Resistant - E. coli and other coliforms, pseudomonas, bacteroides, clostridium
Atypicals also sensitive - Rickettsia, mycoplasma, coxiella, chlamydia, chlamydophia
Is it appropriate practice to use two prescription charts when too busy to rewrite the first chart?
Always bad practice to expect nurses to work from two prescription charts
Avoidable clinical risk - things can be missed from the second prescription chart if it is not realised there are two
Which bacteria are sensitive/resistant to ceftriaxone?
Highly sensitive - streptococcus, staphylococcus, E. coli, neisseria, haemophilus
Sensitive - other coliforms, bacteroides, clostridium
Resistant - enterococcus, pseudomonas
Which antibiotic would usually be used in cellulitis?
Flucloxacillin - provides good cover for common causes
Describe the mechanism of action of antibiotic which inhibit folate synthesis
Inhibition of folate metabolism pathway leads to impaired nucleotide synthesis and therefore impaired DNA replication
Describe the toxicity of chloramphenicol
- Very toxic
- Bone marrow suppression (1 in 10,000 need BMT)
- Aplastic anaemia
- Optic neuritis
What are the important non-infectious causes of diarrhoea to consider when a patient presents with acute diarrhoea?
- Acute diarrhoea can often reflect the acute presentation of a non-infectious bowel disease
- Inflammatory bowel disease (Crohn’s disease/ulcerative colitis), bowel cancer, diverticular disease, chronic pancreatitis, HIV infection and ischaemic bowel
- Non-gastrointestinal infection can also present with diarrhoea, can be a manifestation of sepsis syndrome (e.g. pneumococcal bacteraemia)
What are the common bacterial pathogens/microorganisms associated with infective endocarditis?
Staphylococcus aureus
Streptococci viridans
Streptococcus gallolyticus (S. bovis)
HACEK - haemophilus, aggregatibacter, cardiobacterium, eikenella, kingella
Enterococci
What indicates an uncomplicated UTI?
Lower urinary tract symptoms
Absence of sepsis or evidence of upper tract involvement (pyelonephritis)
How is streptococcus pneumoniae treated?
- Penicillin
- Resistance rare in UK (<1% in Scotland)
- Beware S. Europe, Asia, N. America - travel history important
- Allergy (ask what it does to them)
- Macrolides (clarithromycin)
- Tetracyclines (doxycycline)
List the bacterial mechanisms for antibiotic resistance
- Efflux pumps
- Decreased uptake
- Target alterations
- Alternative enzyme
- Inactivating enzymes
Which bacteria usually cause UTIs?
E. coli, other coliforms
Pseudomonas, enterococcus
Staphylococcus
Describe the appearance of pseudomonas bacteria
Rod shaped
What are the commonest causes of jaundice (hyperbilirubinaemia)?
- Gallstones
- Alcoholic hepatitis
- Cholestasis with fever and leukocytosis commonly seen
- Should always be considered in the jaundiced patient with a history of alcohol excess, especially is ratio of serum AST:ALT is greater than 2 with the values being below 500 international unit/L
- Viral hepatitis
- Predominantly cholestatic syndrome with marked pruritus
- A, B, C, D, E, herpes simplex virus, Epstein-Barr virus, CMV
- Pancreatitis
- Non-alcoholic steatohepatitis
- Associated with diabetes mellitus, morbid obesity
- Primary biliary cholangitis
- Drugs
- Sepsis and low perfusion states
- Bacterial sepsis very often accompanied by cholestasis by hypotension and bacterial endotoxins
- Congestive heart failure, reduced hepatic blood flow and the delivery of bilirubin to hepatocytes, results in predominantly unconjugated hyperbilirubinaemia
- Malignancy
- Paraneoplastic syndromes associated with malignancy can induce a reversible form of cholestasis (Stauffer syndrome), renal cell carcinoma, malignancy lymphoproliferative diseases, gynaecologic malignancies and prostate cancer
- Liver infiltrations - infiltrative processes such as amyloidosis, lymphoma, sarcoidosis, tuberculosis can precipitate intrahepatic cholestasis
List the symptoms associated with typhoid/paratyphoid fever
- GI symptoms:
- Diarrhoea vs constipation
- 50:50
- Diarrhoea more common in children
- Abdominal pain - hepatosplenic discomfort
- Rectal bleeding
- Bowel perforation - hyperplasia Peyer’s patches
- Diarrhoea vs constipation
- Other Symptoms:
- Neurological
- Headache (44-94%)
- Enteric encephalopathy (not infection)
- Altered consciousness/confusion
- Increased mortality
- Steroids
- Bacteraemia
- Metastatic infection
- Relative bradycardia (would expect tachycardia)
- Rose spots - bacterial emboli to skin
- Neurological
List the reservoirs for infections
- Environment
- Animals
- Humans
- Symptomatic/asymptomatic
- Carriers
Describe the use of amoxicillin
- Semi-synthetic penicillin
- Greatly increased activity against gram negative organisms (although resistance is now common)
- Much more orally bioavailable than natural penicillins
- Widely used in the treatment of many infections
- Sensitivities
- Streptococcus, enterococcus
- Neisseria
- Haemophilus, clostridium
- Resistance
- Rest
- Often used for respiratory tract infections caused by strep/haemophilus
Describe the toxicity of gentamicin
- Nephrotoxicity
- Ototoxicity
- Hearing and balance loss
- Oscillopsia
- Neuromuscular blockage - usually only significant in myaesthenia gravis
- Strict prescribing to prevent toxicity
List bacterial causes of traveller’s diarrhoea
Enterotoxigenic E. Coli
Enteroaggregative E. Coli
Campylobacter sp.
Salmonella sp.
Shigella sp.
C difficile
Vibrio sp.
Aeromonas
Plesiomonas shigelloides
Yersinia enterocolitica
How can antibiotics cause harm?
- Disruption of bacterial flora leads to overgrowth of yeasts (thrush), overgrowth of bowel (diarrhoea)
- Antibiotic use associated with development of C. diff colitis (in patients and those they are in contact with), future colonisation and infection with resistant organisms
Describe the classification of streptococci
- Initially classified according to their ability to haemolyse blood agar
- Alpha-haemolytic streptococci
- S. pneumoniae - also called pneumococcus, common cause of pneumonia and meningitis
- S. viridans - commonest cause of bacterial endocarditis
- Beta-haemolytic streptococci
- S. pyrogenes (group A strep) - can cause wound infections and local infections such as tonsillitis and pharyngitis, as well as serious systemic infections e.g. necrotising fasciitis and fulminant shock with accompanying bacteraemia secondary to infection in other sites
- Gamma non-haemolytic streptococci
Describe the antibiotic regimen used in the treatment of necrotising fasciitis
IV flucloxacillin
IV benzylpenicillin
IV metronidazole
IV gentamicin
IV clindamycin
Which bacteria are sensitive/resistant to tazocin?
Highly sensitive - streptococcus, enterococcus, staphylococcus, E. Coli, other coliforms, neisseria, haemophilus, pseudomonas
Sensitive - bacteroides
How are ESBL infections treated? Why is this becoming more difficult?
- Develop a new class beta-lactam antibiotic - carbapenems
- Carbapenemase now being produced - resistance
- Carbapenem = broad spectrum antibiotic (related to penicillin e.g. Meropenem)
- Carbapenemase = an enzyme that breaks down a carbapenem
- Worrying as carbapenems viewed as the last therapeutic option to treat complex infections caused by MDR bacteria
How are macrolides administered?
Excellent oral absorption - given orally even in severe infection
Define sepsis
Life threatening organ dysfunction due to a dysregulated host response to infection
Major cause of mortality
Describe the use of benzylpenicillin
- Administered by IV route
- Oral agent (penicillin V) but not often used
- First choice antibiotic for serious streptococcal infection e.g. erysipelas - skin
- Narrow spectrum agent
- Sensitivities - streptoccocus, some neisseria, minorly clostridium
- Resistant - others
What is the commonest cause of community acquire pneumonia?
Streptococcus pneumoniae
- Gram positive coccus, in pairs
- Most common cause in all groups - old, young, immunosuppressed etc.
What is the clinical significance of bacteroides?
- Can cause infections of the peritoneal cavity e.g. after gastrointestinal surgery
- Resistant to many antibiotics
What are the common causes of cellulitis?
Staphylococcus, streptococcus
How can antimicrobial stewardship be incorporated into the concept of realistic medicine?
Reduces variation in prescribing practice
Reduces waste - over Rx, redundancy
Reduces harm - CDI, AMR, penicillin allergy, toxicity
Allows personalisation/individualisation - risk based Rx
= optimised use and outcome
How is typhoid/paratyphoid fever treated?
- Quinolones
- Most effective agents - ciprofloxacin most commonly used
- Resistance, especially if from South/Central Asia
- Cephalosporins
- Empiric therapy
- Longer courses (14 days)
- Azithromycin
- Very good activity with increasing evidence
- Lack of evidence in severe disease
- Oral option
List the types of antibiotics which act by inhibiting protein synethsis
- 50S ribosomal subunit
- Macrolides
- Erythromycin
- Clarithromycin
- Azithromycin
- Clindamycin
- Chloramphenicol
- Macrolides
- 30S ribosomal subunit
- Aminoglycosides
- Gentamicin
- Doxycyclin
- Aminoglycosides
Describe the appearance of haemophilus influenzae
Gram negative rods
What types of infection do carbapenem resistant enterobacteriaceae cause?
- Bacteriaemia
- Pneumonia
- UTI
- Wound infections
Describe empirical guidance in primary care
- Diagnosis usually syndromic and empirical
- E.g. fever/pain score for bacterial throat infection
- Near patient tests
- CRP, GAS test, urinalysis - beware of over diagnosis
- Culture
- Skin - only swab infected area - limited value, reflects commensal bacteria
- Urine culture - asymptomatic bacteriuria
How can the problem of AMR be reduced?
- Wash hands
- Get vaccinated against flu
- Improve diagnostic skills
How can C diff infection be prevented?
When prescribing keep antibiotics as narrow spectrum as possible
List the types of antimicrobial stewardship interventions used to achieve objectives, and the features of each
- Persuasive
- Education, feedback, reminders, specialist advice, lab reporting
- Longer term benefits through behaviour change
- Restrictive
- Formulary restrictions, pre-authorisation, automatic stop, unsolicited specialist intervention
- Short term benefits including reduction in resistance
Give examples of haemophilus bacteria
Includes H. influenzae which causes sepsis and bacterial meningitis in young child and H. Ducreyi which causes chancroid
Describe how an antibiotic review following empirical treatment is done in primary and secondary care
- Primary care
- Electronic prescribing of definitive course + decision support
- ‘Safety netting’ or review to assess response
- Secondary case - assess response, review patient
- Clinical, micro results
- De-escalate - simplify, switch or stop
- Review IV daily - IVOST/stop
- Document (3 day) review
- Record specific duration of Rx
- Consider specialist input and source control
How can pneumonia be differentiated from an exacerbation of COPD?
Consolidation on X-ray or from clinical signs = pneumonia
List the standard infection control precautions
- Assess patients for infection risk and ensure they are cared for in a safe place
- Practice good hand hygiene
- 5 hand hygiene moments =
- Before touching a patient
- Before procedure
- After a procedure or body fluid exposure risk
- After touching a patient
- After touching a patient’s surroundings
- 5 hand hygiene moments =
- Cover nose and mouth when coughing or sneezing (catch it, bin it, kill it)
- Wear suitable personal protective equipment
- Keep all reusable care equipment clean and well maintained
- Keep the care environment clean and tidy
- Safely handle used linen
- Safely clean up all blood and body fluid spillages
- Safely dispose of all household and care activity waste
- Take corrective action if injured or exposed to blood and body fluids
List the transmission based infection control precautions
- Contact - isolation, cleaning, gloves, apron
- Droplet - surgical mask and eye protection
- Airborne - FFP3 masks
- TB
- Pandemic flu
- Aerosol generating procedures for respiratory pathogens
- Measles varicella zoster
Give examples of beta-lactamase inhibitors
- Clavulanic acid - combined with amoxicillin to make co-amoxiclav (Augmentin)
- Tazobactam - combined with piperacillin to make tazocin
What measures should be taken in a patient who is found to have a C. difficile infection?
- The severity of the CDI should be assessed and appropriate treatment initiated i.e. a decision made as to whether to start metronidazole or vancomycin
- Unnecessary antibiotics should be stopped
- Any laxatives and proton pump inhibitors should be stopped
- Standard infection control precautions need to be in place as well as isolation of the patient and appropriate hand hygiene with soap and water and not alcohol gels
Describe the typical pathogenesis of acute bacterial cholecystitis
Bacterial infection in a patient with biliary obstruction, organisms typically ascend from the duodenum when normal barrier mechanisms are disrupted, bacteria can pass through the sphincter of Oddi with a stone then acting as a nidus for colonisation/infection
How can a rapidly progressing/immediately life-threatening infection be identified?
- Organ dysfunction = sepsis
- Deep seated/involving vital organs (may not be sepsis)
- Bacteraemia
- CNS
- Cardiovascular
- Graft related
- Systemic inflammatory response - fever/hypothermia, tachypnoea, tachycardia, high/low WCC
How does surviellance underpin antimicrobial stewardship?
- Volume of antibiotic prescribing
- Measured through pharmacy records (not per individual)
- Stratified for antibiotic type (defined daily dose)
- Adjusted for population size e.g. per 1000 population or per admission/occupied bed day
- Quality of antibiotic prescribing
- Measures prescribing in an individual against a guideline
- Antimicrobial resistance
- To inform guidance and monitor effect of interventions
- Clostridium difficile
- Other adverse events related to prescribing/interventions
Which bacteria are sensitive/resistant to co-amoxiclav?
Highly sensitive - streptococcus, enterococcus, staphylococcus, neisseria, haemophilus
Sensitive - E. coli, other coliforms, bacteroides, clostridium
Resistant - Pseudomonas
What are the important questions to ask when taking a history from a patient presenting with acute diarrhoea?
- Food history - can they attribute the onset of diarrhoea to a particular meal they ate, classic causes include undercooked poultry, reheated rice and frozen food that has been incompletely defrosted prior to cooking
- Ill contacts - many forms of gastroenteritis passes from person to person, particularly important when thinking about viral gastroenteritis where contact with others (often children) with diarrhoea and vomiting is common
- Travel history - ask about pre-travel vaccination and food and water precautions when travelling (use of bottled water, ice in drinks etc.), travel to exotic locations increase risk of parasitic causes of gastroenteritis and changes the spectrum of possible pathogens
- Past medical history - important when thinking about non-infectious aetiology, ask about medication (many drugs include diarrhoea as a side effect)
- Occupational history - some occupations bring people into contact with potential reservoirs of infection e.g. sewage workers, vets. Important to know if they handle food - implications for when they can return to work to prevent onward transmission of any infection
- Risk factors for C. diff infection - usually a hospital acquired infection, main risk factors are age >65, recent hospitalisation and recent course of antibiotics (presence of 2/3 risk factors should prompt the consideration of CDI as a cause of diarrhoea)
Describe the reservoir of and illness caused by rotavirus
Person to person
Vomiting and non-bloody diarrhoea - most often in children
What criteria define systemic inflammatory response syndrome?
2 or more of
- Temperature >38
- Tachycardia >90bpm
- Tachypnoea RR>20/min
- WBC >12
List antibiotics that act by targetting DNA repair and replication
- Quinolones
- Ciprofloxacin
- Levofloxacin
- Rifampicin
Which antibiotics should be prescribed, and for how long in a hospitalised COPD exacerbation with green sputum?
- Doxycycline or amoxicillin
- 5 days
How can the action of beta-lactamases be prevented?
- Beta-lactamase inhibitors - effectively inhibit some beta-lactamases
- Co-administered with penicillin antibiotic
- Greatly broadens spectrum of penicillins against gram -ves and S. aureus
- There are many beta-lactamases that are not inhibited leading to antibiotic failure
Describe the typical appearance of streptococci bacteria
Gram positive cocci, grow in chains
Describe the minor criteria of the Duke criteria
- Fever - temperature >38
- Vascular phenomena - arterial emboli, pulmonary infarcts, intracranial bleed, conjunctival haemorrhages, Janeway lesions
- Predisposing heart condition (prosthetic heart valve or a valve lesion associated with significant regurgitation or turbulence of blood flow) or intravenous drug use
- Immunologic phenomena - Osler nodes, Roth spots, rheumatoid factor, glomerulonephritis
- Positive blood cultures but doesn’t meet major criteria or serologic evidence of active infection with organism consistent with IE
Describe the relationship between antibiotic use and antimicrobial resistance
AMR correlated with human antibiotics use - countries which use more antibiotics have higher levels of AMR
How is a rapidly progressing/immediately life-threatening infection dealt with in secondary care?
- Urgent blood cultures then IV antimicrobial therapy within ONE hour
- Review all anatomical systems, perform CXR and consider other imaging/laboratory investigations. Review diagnosis daily.
- Add cover for S. aureus infection if - healthcare associated, recent hospitalisation, post-op wound/line related, IVDU/PWID
- Add cover for MRSA infection if recent MRSA carrier or previous infection
- Add cover for severe streptococcal infection if pharyngitis/erythroderma/hypotension
Describe the type 1 hypersensitivity reaction which can occur in response to beta-lactams
- Relatively common allergy (0.7-4% of penicillin courses)
- Most patients develop an urticarial rash
- Anaphylaxis is most feared complication - gross neck swelling and airway obstruction
- Cross reaction between classes is variable
Describe the appearance of E. Coli
Rod shaped coliform
How long should antibiotics be prescribed for in cellulitis, and what is this determined by?
7-10 days, determined by response
List the mechanisms of bacterial resistance in gram negative bacteria
- Loss of porins
- Beta-lactamases in periplasmic space
- Over-expression of transmembrane efflux pump
- Antibiotic modifying enzymes
- Target mutations
- Ribosomal mutation or modification
- Mutations in polysaccharide structure
What is the minimum total duration of antimicrobial therapy recommended for the treatment of septic arthritis?
- Optimal duration remains uncertain
- Typical duration of parenteral antibiotics is at least 14 days, followed by oral therapy for an additional 7-21 days
- Choice of oral antibiotic regimen for completion of therapy depends on the pathogen and antibiotic susceptibility (oral agents with high bioavailability)
Explain the staining of gram positive and gram negative bacteria
- Gram positive
- Stain purple - take up dye and don’t release it when washed due to thick cell wall
- Gram negative
- Stain pink - take up dye and release it when washed due to thin cell wall
List the causes of enteric fever (typhoid or paratyphoid)
- Salmonellae typhi
- Salmonellae paratyphi
- Human reservoir only (no animal reservoir)
- Human to human
- Contaminated food/water
- Infectious load
- 1000 organisms cause disease in 10-20%
- Higher inoculum - shorter incubation period/higher attach rate
- Most prevalent in South Central Asia - India, Pakistan, Nepal
Why has the use of aminoglyosides recently increased?
- Improved dosing regimens
- Restriction of other broad spectrum antibiotics e.g. cephalosporins
- Use of gentamicin in Glasgow more than doubled
Describe the pathogenesis of typhoid/paratyphoid fever
Ingest contaminated food/water
Bacteria invade through Peyer’s patches
Infects the reticuloendothelial system - liver, spleen, lymph nodes
After a period of time become bacteraemic
Describe the appearance of emphysema on x-ray
- Black lungs
- Diffuse hyperinflation with flattening of diaphragm
- Enlargement of pulmonary artery/right ventricle
What negative effects do mislabeling penicillin allergies have?
Increased Rx cost, admission length, AMR and poorer outcomes
What AMR mechanisms have evolved in S aureus?
- Ab degradation - penicillinase
- Target modification - PBPs (MRSA)
- Antibiotic efflux - tetracycline R
How long should antibiotics be prescribed for in upper UTIs?
7 days
Describe the features of mycoplasma pneumoniae
- Commonest atypical pneumonia - not classical presentation
- Smallest free living bacterium
- Lack of cell wall, important when considering antibiotics
- Very difficult to grow, other ways of diagnosing
- Most prevalent in autumn/winter
What are the confounding variables affecting resistance of a bacteria?
- Laboratory
- Inoculum size, growth phase, planktonic, pH, atmosphere
- Biofilm
- Clinical
- Co-morbidities, pus collections, foreign bodies, site of infections
- Biofilm (e.g. on prosthetics - difficult to treat)
- Pharmacokinetics
- Pharmacodynamics
How long should antibiotics be prescribed for in intra-abdominal sepsis and what is this determined by?
4 days, determined by if the source is controlled or not
Describe the epidemiology of malaria
- 27-48% hospitalised returning travellers
- Most common cause of fever in travellers from Sub-Saharan Africa (risk elsewhere)
- 10% geosentinel no report of fever
- GI - diarrhoea
- Respiratory - dry cough
- Headaches
- Diagnosis initially missed in up to 59%
- Rx 7.6 days after admission
High Risk Areas
- Sub-Saharan Africa
- India, Pakistan, Southeast Asia
- Americas - Amazon basin
Describe the criteria in sequential organ function assessment
Respiratory rate >30
Confused
Low BP unresponsive to fluid challenge
= evidence of organ dysfunction
List viral causes of traveller’s diarrhoea
Norovirus
Rotavirus
Enteric adenovirus
Describe the reservoir of and illness caused by E. Coli 0157
Ruminants (beef)
Bloody diarrhoea, colic, low grade fever
What are the main points from history/examination which would suggest HIV infection in a patient with acute diarrhoea?
Diarrhoea is a common manifections of HIV infection - results from infection of enterocytes with HIV
Will often be accompanied by weight loss and other HIV indicator illnesses e.g. previous shingles, oral thrush, thrombocytopaenia
Describe the clinical features of typhoid/paratyphoid fever
- Incubation period 5-21 days
- Shorter in older, those with reduced gastric acidity, immunocompromised and where there is a high infectious load
- Spectrum of clinical effect
- Fever, myalgia, headache, cough, abdominal pain, constipation, diarrhoea –> septic shock, death
- Mortality rates <1% with antibiotics (15% pre-antibiotic era)
Compare resistance against clarithromycin in typical and atypical pathogens
- Resistance among typical pathogens relatively common - can only be used in non-severe infections
- Resistance among ‘atypical’ pathogens relatively rare - is included in severe infections to cover these organisms (esp. severe community acquired pneumonia)
What is the role of the laboratory in antimicrobial stewardship programmes?
- Optimisation of lab diagnosis - sampling, testing and minimisation of ‘over diagnosis’
- Restricted reporting of organisms to prevent over treatment
- Restrict reporting sensitivities to reduce use of innapropriate agents
- Co-ordination of clinical advice with guidance
- Data on resistance and CDI
Give examples of gram positive rods
- Clostridia (C difficile, C tetani)
- Bacillus (B anthracis, B cereus)
- Listeria (L monocytogenes)
- Others - corynbacteria (C diphtheriae) and propionobacterium (P acnes)
Why do some countries have higher antibiotic use than others?
In most countries, antibiotics can be easily purchased without prescription or involvement of a health profession or veterinarian
Poor quality medical and veterinary products are widespread, and often contain low concentration of active ingredients, encouraging emergence of resistant microbes
Other than AMR, what harm is caused by antibiotic overuse?
- Increase in broad spectrum antibiotics (cephalosporins) correlates with rise in CDI
- Avoidable toxicity - 1 in 5 hospital patients suffer >1 antibiotic associated adverse event altering their clinical path
- Vascular device complications (including >50% of SABs)
- Prolonged hospitalisation
- Opportunity cost - IV antibiotics divert nursing time from patient care
- Unnecessary prolonged Rx - wasteful and expensive
Describe the use of flucloxacillin
- Synthetic penicillin developed to be resistant to beta-lactamase produced by staphlycocci
- Antibiotic highly active against
- Staphylococcus aureus (not MRSA)
- Streptococci
- No activity at all against gram negative organisms
- Can be given orally but nausea limits dose
List four important clinical signs/symptoms associated with acute septic arthritis
Joint pain
Joint swelling
Warmth
Restricted movement
Seen in approx. 80% patients with septic arthritis
Describe types of Neisseria bacteria
- N. meningitidis - causes bacterial meningitis and septicaemia
- N. gonorrhoeae - causes gonorrhoea
In which environments is legionella pneumophila often transmitted?
- Free living organism
- Infects amoebae, found in things that aerosolise water
- Jacuzzis
- Hotel showers
- Air conditioning
- Hospitals
Describe the types of necrotising fasciitis and the causative organisms
4 classes of necrotising fasciitis
- Type 1 - synergistic infection with anaerobes (e.g. bacteroides, peptostreptococcus) and aerobes (streptococci, enterobacteriaciae), more common in elderly diabetic patients - very broad antibiotic cover required
- Type 2 - infection with group A streptococci (S pyrogenes or occasionally S aureus), mediated by toxin production
- Type 3 - vibrio vulnificus, after trauma in sea water
- Type 4 - fungal
Describe the structure and mechanism of action of beta-lactams
- All beta-lactams have same structural feature - beta lactam motif, analogue of branching structure of peptidoglycan
- Present analogue of peptidoglycan to enzymes which cause peptidoglycan crosslinking needed for bacterial cell wall
- Inhibits crosslinking of cell wall peptidoglycan
- Causes lysis of bacteria - bacteriocidal
- Very fast acting
How does bacterial gastroenteritis usually differ in onset from food poisoning caused by ingestion of toxins or viruses?
Food poisoning caused by ingestion of toxins or viruses tend to have an abrupt onset of symptoms within hours of ingestion
Bacterial gastroenteritis tends to take longer to develop although can occur abruptly if a high amount of bacteria are ingested
How can potential hosts be protected from infection?
Vaccination
Prophylaxis
Nutrition
Treatment of immuno-suppressive
Protective isolation
Describe the mechanism of action of bactericidal antibiotics
- Achieve sterilisation of the infected site by directly killing bacteria
- Lysis of bacteria can lead to release of toxins and inflammatory material
What is the main issue with vancomycin in clinical use?
Under-dosing - cleared too fast in those with normal kidney function
List the examples of viral haemorrhagic fever
- Lassa - most common, spread by rats found in grain barns in rural West Africa
- Ebola/Marburg - probably same virus, spread by giant fruit bats
- Now have drugs to treat
- Congo-Crimean haemorrhagic fever - spread by tics
- South American haemorrhagic fevers - rare
- Rift valley fever
- Dengue haemorrhagic fever - mosquitoes
- Yellow fever
How should a catheter associated UTI be treated?
- Remove catheter
- Rx if symptoms/sepsis
Describe the lifecycle of the malarial parasite
- Sexual cycle completed within the gut of a female anopheles mosquito
- Sporozoites to saliva of mosquito
- Mosquito bites, parasite detects body heat and is released in the mosquitoes salvia, also contains a local anaesthetic to allow feeding without host awareness - sporozoites inoculated into human host
- Preerythrotic stage in liver - schizonts
- Schizonts rupture and parasite is liberated from the liver into the bloodstream
- Incorporated into RBC, matures
- Immature trophozoite (ring stage)
- Mature trophozoite
- Schizont
- Ruptured schizont - spread
Or become gametocytes –> infect other mosquitoes
Describe the mechanism of action of metronidazole
- Enters by passive diffusion and produces free radicals
- Effective against most anaerobic bacteria - not actinomyces
List the common antibiotic combination therapies
Amoxicillin + clavulanic acid = Augmentin
Piperacillin + taxobactam = Tazocin
How does human behaviour impact antibiotic prescription? How should this be challenged?
- GPs feel under pressure to prescribe antibiotics - will prescribe when unsure if bacterial or viral infection, when they don’t deem it medically necessary or just to appease patients
- Misconceptions - withholding antibiotics is always harmful or ‘wrong’
- Expectations and experience drive antibiotic seeking behaviour - doctors can reinforce behaviour by prescribing antibiotics when not necessary
- Evidence evolves - behaviour needs to also, keep up to date
- Prescribing is multifaceted - hierarchy is bad, value all the team
What signs would strongly suggest a bacterial infection, prompting the prescription of an antibiotic?
- Symptoms/signs of infection
- Fever, sweats, rigors, shivers and shakes
- Localising symptoms/signs
- Dysuria and frequency
- Dyspnoea, cough + green/brown sputum, crepitiations
- Erythema, heat, swelling
- Sore throat with exudate and adenopathy
- Record indication for antibiotic
How is vancomycin administered?
- Not absorbed from GI tract so almost always given IV
- Oral route only used for treatment of C. diff
- Long half-life so loading doses usually given
How is mycoplasma pneumoniae diagnosed?
Difficult to culture - not done
Serology
PCR (sputum/throat swab/viral gargle)
Describe the action of clindamycin
- Similar in many was to macrolides
- Same mechanism of action
- Excellent oral absorption
- Principle action against gram +ves
- Some key differences
- No action against aerobic gram -ves or atypicals
- Excellent activity against anaerobes
- Highly effective at stopping exotoxin production
How is an antimicrobial stewardship leadership team organised?
- Leadership - dedicated team with expertise in infection management, prescribing surveillance and quality improvement
- Infection specialists, clinical pharmacist
- Multi-disciplinary clinical network and committee
- Management engagement and IPC coordination
- Clinical governance and patient safety
Give examples of barriers to and qualities which promote antimicrobial stewardship
Knowledge
Experience
Prescribing culture
Hierarchy
Team work/perception of roles and responsibilities
What pattern can be seen in antibiotic deployment and observation of antibiotic resistance?
Every time a new antibiotic is discovered resistance develops
Fewer antibiotics being discovered so resistance becomes a problem
Describe the reservoir of and illness caused by giardiasis
Contaminated food and water
Loose stool often associated with bloating and excess wind
Which disease-causing organisms are included in the clostridium species?
Causative agents of botulism and tetanus e.g. C. difficile
How can the heart and appendages be easily viewed in the diagnosis of endocarditis?
- Heart and appendages easily viewed by an echo
- Transthoracic echo is a non-invasive procedure that define both the structure and the function of the heart, not as sensitive as transoesophageal echo, which is more invasive (patients need to be sedated)
Define antibiotic spectrum
- Range of bacterial species treated effectively by the antibiotic
- Can vary widely even within the same antibiotic class e.g. Penicillins have no overlap in spectrum
- Important to distinguish between lack of activity and resistance
- Lack of activity - intrinsically the antibiotic won’t have any effect due to the nature of the bacterium
- Resistance - bacterium has acquired an often genetic factor which prevents the antibiotic having an effect
What is the advantage of cephalosporins over penicillins?
Less susceptible to beta-lactamases
Good activity against gram -ves and gram +ves
Describe the appearance of staphylococci bacteria
Gram positive coccus, grow in irregular grape-like clusters
What are the most common causes of gastroenteritis in patients with no past medical history, no regular medication and no travel history?
Campylobacter sp.
Salmonella sp.
E. Coli 0157
Norovirus
Rotavirus
Giardiasis
Enterohaemorrhagic E. Coli
Give examples of gram negative rods
- E coli
- Klebsiella (K pneumoniae)
- Pseudomonas (P aeuroginosa)
- Others - proteus, serratia, salmonella, shigella etc.
When is doxycycline commonly used?
Soft tissue infections, respiratory tract infections (if allergic to amoxicillin)
Travel associated atypicals, anti-malarials
Give an example of how conjugation gives a bacterium resistance
Example of Conjugation and Beta Lactamases:
- AMR mechanism = antibiotic degradation
- Beta-lactamases in Enterobacteriaceae