Week 6 Clarke - Immunology I & II Flashcards
What are the principals of recognition?
How to identify self versus non-self:
- antigen recognition molecules
- complement
- antibodies
- PAMP (Pathogen Associated Molecular Patterns)
- DAMP (Damage Associated Molecular Patterns)
- TLR (toll-like receptor)
- MHC Class I/II
- T-cell/B-cell receptor
- specific binding
- affinity
- avidity
- Positive selection
- Negative selection
What is avidity?
- Specific binding
- Cooperative interactions
- The SUM of many tiny binding sites yield very high binding strength.
- ex. monomeric IgM binds weakly to antigen, however pentmeric IgM binding can be strong
What is affinity?
- An attraction or force between particles that causes them to combine, as the attraction between an antigen and an antibody.
(higher affinity → smaller Kd)
What is an exogenous agent?
An antigen (recognized) that has immunogen properties (induces immunity).
What is the Secondary Response?
The “trained” response.
- system that is already trained to react
- still short lag period when immune response cells are being delivered to infection
- greater antibody concentration, smaller peak
- high IgG levels (due to memory cells)
- lower IgM levels
Why is there a lag time in the primary response?
Lag period = 5 days
- Time it takes to recognize antigen, allow antigen presenting cells to educate and activate T-cells, produce antibodies, and deliver immune response cells to site of infection
- Also need to screen B-cells and memory cells for antigen recognition and deliver them to site of infection if already trained to fight particular infection
What are PAMPs?
Pathogen Associated Molecular Patterns
- Molecular moieties that are absolutely required for pathogen survival
- outside alert signal
- e.g.: endotoxin, flaggelin, peptidoglycan, terminal mannose
- initiates inflammation
- recognition by innate immune system
- recognition system has co-evolved with the appearance of the PAMP
What are DAMPs?
Damage Associated Molecular Patterns
- Occult and obscured from the defense mechanisms (hidden)
- Danger/Damage signal
- Recognized by the innate immune system
- E.g.: Proteins (heat shock proteins), Non-proteins (uric acid crystals, ATP, DNA, Heparin sulfate, Hyaluronan fragments)
What are TOLL Like Receptors?
- recognize non-self from extracellular sources
- about 12 types
What are the *** Immunological Zones?
- Skin (Entry)
- Interstitial
- Mucosal
What are the three lines of defense?
- Epithelium
- barriers
- Mesoderm
- cellular responses
- flushing
- lyses
- trapping
- Endoderm
- cellular responses
- flushing
What cells respond to pathogens (parasites, protozoans, helminthes, fungal, viral) that pass through the Skin Immunological Zone?
- Langerhan’s cells
- Mast cells
- Neutrophils
- Macrophage
- Eosinophils
What cells respond to pathogens (viruses/bacteria) that pass through the Interstitial Immunological Zone?
- Macrophage
- CD4+ Helper T-cell
- Cytotoxic T-cell
- Natural Killer Cell
What cells respond to pathogens (bacteria/viruses) that pass through the Mucosal Immunological Zone?
- Macrophage
- Dendritic cell
- gamma-delta T-cell
- B1 cells
What is the difference between natural and artificial immunization?
- Natural
- Passive (maternal)
- Active (infection)
- Artificial
- Passive (antibody transfer)
- Active (immunization)
Summarize Innate immunity.
- Provides sensors for pathogens (TLR’s)
- Rapid response
- Genetically hardwired
- Limited repertoire
- Principle agent = Complement
Summarize Adaptive Immunity
- Provides high affinity receptors for antigen, production of high affinity requires anticipatory receptors that can be modified (class switching and somatic hypermutation)
- Genetic recombination
- Protracted response - lag time
- Immense repertoire
- Principle agent: Antibody
Dendritic Cell
- Leukocyte derived (pDC, plasmacytoid)
- Myeloid derived (mDC)
- Process Ag from MHC Class II display
- Identifies non-self using receptors for PAMPs
*
Macrophage
- Leukocyte derived (pDC, plasmacytoid)
- Myeloid derived (mDC)
- Differentiated from monocytes
- Involved in phagocytosis and activation of bactericidal mechanisms
- Antigen presentation
- Found in many tissues
- Cannot re-enter blood
Monocyte
- Leukocyte derived (pDC, plasmacytoid)
- Myeloid derived (mDC)
- non-granular
- found only in the blood/circulation
Mast Cell
- Release of granules containing histamine and active agents
- Large, irregular shaped
- Large granules: histamine, heparin, TNF-alpha
- responsible for causing vascular dilation
- found in skin, lung alveoli, GI mucosa, nasal mucosa
- questionable derivation
Eosinophil
- Killing of antibody-coated parasites
- Allergies and helminthic parasites
- Large and low abundance
- Peroxidase, basic proteins, leukotrienes
- Generally in bone marrow and connective tissues
- bilobed
- Fc-epsillon
- Phagocytosis
- Attaches to target for extracellular degranulation
Neutrophil
- Phagocytosis and activation of bactericidal mechanisms
- Fundamental defense (would be dead w/o)
- Multi-lobed
- 50%-70% of leukocytes
- 60% of bone marrow activity
- Fc and Complement Receptors
- Phagocytosis
- Lytic secretions
- Lysoszyme
- Oxidases
- Defensins
- Pus
Natural Killer Cell
- Lymphoid derived
- No antigen receptor
- Screen for the absence of MHC Class I
- if no MHC Class I → kills cell
- Induces apoptosis in target cells
- releases lytic granules that kill some virus-infected cells
- Works in partnership with cytotoxic T-cells
What are Cytokines?
- Small glycoprotein that is a soluble mediator
- Commonly operate in sequential patterns, cascading
- Synthesized on demand
- Autocrine/Paracrine (short-range acting)
- No discrete organ, ubiquitously found
What are the steps of Recognition of Non-self?
- Proteins and peptides are scavenged by myeloid dendritic cells
- Proteins are processed to small peptides
- Myeloid dendritic cell expresses antigen in MHC Class II
- PAMP directs the surface expression of the Antigen-MHC class II
- T-cells screen myeloid dendritic cell for antigen (T-cells express surface receptors that weakly recognize pepties)
- A match results in T-cell activation
What is MHC Class I?
Major Histocompatibillity Complex I
- Present in all nucleated cells (except RBCs)
- Antigen display is of self-proteins
- “designates self”
- Antigen is generally synthesized intracellularly and expressed on the cell surface to alert the immune system
- ex. active immunization
What is MHC Class II?
Major Histocompatibillity Complex Class II
- Antigen display is of extracellular proteins
- antigen was acquired at the site of inflammation, but displayed in a secondary immune organ
- present antigen to T-cell (how lymphocytes are educated)
- Present in dendritic cells, macrophages, and B-cells
How do B-cells and T-cells recognize antigens?
- B-cells
- use cell surface immunoglobulin
- T-cells
- use a fragment of the immunoglobulin at the cell surface
What are some important structural characteristics of immunoglobulins (antibodies)?
- Antigen binding domains
- 2 types of light chains form variable ends
- beta-barrels give rigid properties to variable ends
- 2 hinge regions allow for flexible antigen binding
- Fc
- homodimer heavy chain consistent with AA → crystallizes
What two structural motifs refer to the Fc region of immunoglobulins (antibodies)?
- Isotype
- Variation dependent on heavy chain identity
- 5 types of heavy chains (IgG, IgD, IgE, IgA, IgM)
- Allotype
- Allelic variation of the isotype outside of the antigen binding region
What structural motif refers to the antigen binding region of immunoglobulins (antibodies)?
- Idiotype
- variation within the variable domain
- idiotype specifies antigen binding
***What are the three antibody functions?
- Neutralization (antibodies bind to and degrade bacterial toxins)
- Opsonization (“sauce” that coats bacteria)
- Complement activation (starts cascade to pop holes in target or lyse bacteria, and ingest)
What are the five segments of a T-cell Receptor?
- Variable region (V) (idiotype- binds to antigen)
- Constant region (C)
- Stalk segment
- Transmembrane region
- Cytoplasmic tail
**Has alpha chain and beta chain (allotype depends on type of antibody)
**In order to direct an adaptive immune response, what do T-cells recognize?
MHC Class II molecules
In order to identify intracellular pathogens, what do Cytotoxic T-cells (CD8+) recognize?
MHC Class I molecules
What kind of cells do Natural Killer cells kill?
Cells not expressing MHC Class I molecule
(without it → you dead)
What do T-helper (CD4+) cells do?
- Direct immune response:
- Cell mediated immunity
- Humoral immunity
- inflammation
What is the early response to pathogens?
(Hint: 3 steps)
Pathogen entry leads to innate response of flush (fluid extravasation), clot (trap particles), then remove (Neutrophils and Macrophages).
How do Mast Cells coordinate the inflammatory response?
(Hint: 3 mechanisms)
- Direct interations:
- Recognition by toll-like receptor (TLR)
- CSCL8 recruits leukocytes to the inflammatory site.
- Fc-receptor-mediated activation
- CSCL8 recruits leukocytes to the inflammatory site
- C-receptor-mediated activation