Week 3 Flashcards
4 classes of macromolecules:
- Carbohydrates
- Lipids
- Proteins
- Nucleic acids
Biomolecule -
any chemical molecule that is a structural or functional component of living organisms
Chemical elements that participate in the synthesis of biomolecules structures: C, H, O, N, S, P
polymer and what classes are polymers:
- a long molecule consisting of many similar building blocks (monomers)
- Carbohydrates (monosaccharides)
- Proteins (amino acids)
- Nucleic acids (nucleotides)
Dehydration reaction (condensation reaction):
2 monomers bond together through the loss of a water molecule
Enzymes -
macromolecules that speed up the dehydration process
Hydrolysis -
reaction that is the reverse of the dehydration reaction: disassembles polymers to monomers
Carbohydrates molecular formula and ex
(CH2O)n
ex:
- Pentoses: C5H10O5 (ribose, deoxyribose) (n=5)
- Hexoses: C6H12O6 (glucose, fructose) (n=6)
what are biologically important carbohydrates are also called?
sugars
4 categories of carbohydrates:
-
Mοnosaccharides: (CH2O)n where n = 3-7
ex: glucose and fructose -
Disaccharides: made by 2 monosaccharides
ex: maltose, sucrose, and lactose - Οligosaccharides: composed by 20-30 monosaccharides
-
Polysaccharides: composed by many glucose subunits
ex: starch, glycogen, cellulose
most common monosaccharide
Glucose (C6H12O6)
Functions of monosaccharides:
- fuel for cells
- raw material for building molecules (ex: glycoproteins, proteoglycans)
Monosaccharides are classified by:
– The location of the carbonyl group: as aldose (>C=O at the end) or ketose (>C=O in the middle)
– The number of carbons in the carbon skeleton
Monosaccharides: structure
May be linear but in aqueous solutions many sugars form rings, b/c it’s more E favourable => in the cell it’s rings
Disaccharides (Sugars): consist of? name of the bond? examples (3)?
- Consist of 2 monosaccharides
- Covalent bond b/w the molecules is called a glycosidic linkage
ex:
Glucose + galactose = lactose (milk)
Glucose + glucose = maltose (beer)
Glucose + fructose = sucrose (sucrose - white sugar)
Polysaccharides and their functions:
- the polymers of sugars
- have storage and structural roles
- structure and function of a polysaccharide are determined by its sugar monomers and the positions of glycosidic linkages
Storage Polysaccharides:
- Starch
- Glycogen
– Polymers consisting entirely of glucose monomers
Starch
- the major storage polysaccharide in plants
- α-glucose polymer
- consists of 2 polysaccharides: amylose (20-30%) and amylopectin (70-80%)
- plants store excess starch as granules within chloroplasts and other plastids (called amyloplasts)
- α-linkage (-OH group at C2 is in the same plane w/ -OH-group at C1) => helical molecule => granules
Glycogen
- storage polysaccharide in animals
- humans and other vertebrates store glycogen mainly in liver and muscle cells as cytosolic granules
- it is branched - easier f/ hydrolysis, better access f/ enzymes
- α-glucose polymer
- α-linkage (-OH group at C2 is in the same plane w/ -OH-group at C1) => helical molecule => granules
Structural Polysaccharides
- Cellulose: in plant cell walls
- Chitin: in fungal cell walls and arthropod
Cellulose:
- found in plant cell wall
- an unbranched β-glucose polymer (-OH group at C2 is in diff side of the plane than the -OH group in C1)
- diff glycosidic linkages from starch: β-linkage = linear molecule => cell wall component
Humans can digest ___ but not ___
Humans can digest starch but not cellulose => Cellulose in human food passes through the digestive tract as insoluble fiber
Chitin (where found? monomer? linkage? clinical correlation?)
- Found in the exoskeleton of arthropods and fungal cell walls
- Used to make surgical thread (!)
- monomer: β-NAG (N-acetyl-glucosamine)
- diff glycosidic linkages from starch: β-linkage = linear molecule => cell wall component
Lipids
- the one class of large biological molecules that do not consist of polymers (of diff types of components)
- hydrophobic
Biologically important lipids:
- Fats
- Phospholipids
- Steroids
Fats (structure, fn)
- structure: glycerol + 3 fatty acids => triglycerides
- storage form of fat
Fatty acid structure:
R- COOH, where R= long hydrocarbon chain (usually 16-18 carbons)
Fatty acids vary in:
- length (number of carbons)
- number and locations of double bonds
Saturated fatty acids (formula, characteristics, 3 examples):
- molecular formula: CH3(CH2)nCOOH
- have max # of H atoms possible => have no double bonds => solid at room T
- mostly found in animals
ex:
Stearic acid (18:0): 18 C, 0 double bonds
Palmitic acid (16C)
Butyric acid (4 C)
Unsaturated fatty acids:
- unsaturated fats or oils
- have 1 or more double bonds => bending => liquid at room T
- mostly found in plants and fish
ex:
Oleic acid - monounsaturated fatty acid (18:1)
Linoleic acid - polyunsaturated fatty acid (18:2)
Stearic acid
18 C
saturated
Palmitic acid
16 C
saturated
Οleic acid
18 C
unsaturated
Saturated fats: health risks
diet rich in saturated fats may contribute to cardiovascular disease through plaque deposits
Diff molecular effects of saturated and unsaturated fats on the liver
- Unsaturated fats actually reduce LDL-bound (“bad”) cholesterol levels and maintain HDL-bound (“good”) cholesterol (signal to the liver to take up cholesterol from the blood => improve cholesterol levels)
- Saturated fats directly increase LDL-bound (“bad”) cholesterol levels
Functions of fat:
- energy storage (humans and other mammals - in adipose cells)
- cushions vital organs
- insulates the body
Phospholipids:
have only 1 or 2 FA & phosphate group instead of 3rd FA
2 types of phospholipids:
- Phosphoglycerides: glycerol + 2 fatty acids + phosphate + organic molecule
- Phosphosphingolipids: sphingosine + 1 fatty acid + phosphate + organic molecule
Phospholipids’ Function:
important components of biological membranes
Phospholipid structure in terms of affinity to water
Amphipathic molecules: consist of a hydrophilic “head” and hydrophobic “tails”
Common membrane phospholipids and their structures (5):
Phosphatidyl-choline: Glycerol + Choline
Phosphatidyl-ethanolamine: Glycerol + ethanolamine
Phosphatidyl-serine: Glycerol + Serine
Phosphatidyl-inositol: Glycerol + inositol
Sphingomyelin: Sphingosine + choline
Bilayer arrangement:
When phospholipids are added to water, they self-assemble into a bilayer, with the hydrophobic tails pointing toward the interior
Steroids
- lipids characterized by a carbon skeleton consisting of four fused rings
exs:
Cholesterol - steroid found in animal cell membranes, precursor f/ some hormones (steroid hormones - estradiol & testosterone)
Ergosterol - in fungal membrane, target for antimicotic antibiotics
Cholesterol: health risks
- Cholesterol circulates in blood bound to lipoproteins:
HDL - high density lipoproteins: protein > cholesterol => travels fast into bloodstream and targeted-deposited directly into the liver
LDL - low density lipoproteins: cholesterol > protein => travels slower into bloodstream and leaves bits and pieces around => atheromatic plaque formation (cholesterol+ platelets) - Lipoproteins are recognized by their receptor on the PM of liver cells (hepatocytes)
- cells take in the lipoproteins-cholesterol vesicles => receptor-mediated endocytosis
Proteins’ function (6):
- structural support by structural proteins (ex: collagen, elastin, keratin)
- storage by storage proteins (ex: ovalbumin, casein)
- transport by transport proteins (ex: hemoglobin)
- cellular communications by receptor proteins & hormonal proteins (ex: insulin)
- movement by contractile & motor proteins (ex: actin, myosin)
- defense against foreign substances (immune response) by defensive proteins (ex: antibodies)
Enzymes - type of protein
that acts as a catalyst, speeding up chemical reactions
Polypeptides: Amino Acid Polymers
- monomer - amino acid (each polypeptide has a unique linear sequence of amino acids)
- protein consists of one or more polypeptides
- aminoacids => polypeptides => proteins
Amino acid monomer:
- organic molecules possessing both carboxyl and amino groups
- differ in their properties due to differing side chains, called R groups
- general structure: H2N-CHR-COOH
Glycine
Gly
nonpolar
Alanine
Ala
nonpolar
Valine
Val
nonpolar
Leucine
Leu
nonpolar
Isoleucine
Ile
nonpolar
Methionine
Met
nonpolar
Phenylalanine
Phe
nonpolar
Tryptophan
Trp
nonpolar
Proline
Pro
nonpolar
Serine
Ser
polar