W8 Anticancer drugs l (SF) Flashcards

1
Q

Cytotoxic or chemotherapeutic drugs
Most traditional anticancer drugs working by disrupting the function of DNA.. How? (3)

A

1) Act on DNA directly
2) Act indirectly: inhibition enzymes involved in the synthesis of of DNA itself
or of nucleotide building blocks
3) Act on microtubule dynamics involved in mitosis

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2
Q

What are the 3 main classes
of cytotoxic drugs?

A

1-Drugs targeting DNA structure & template activity
2-Antimetabolites: target enzymes involved in the synthesis of DNA itself or
of nucleotide building blocks
3-Mitotic arrest agents target microtubules

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3
Q

Sites of actions of cytotoxic drugs:

A
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4
Q

Cytotoxic drugs effects related to the cell cycle

A

Active at specific points in the cell cycle
* Antimetabolites: S phase
(synthesis of nucleosides)
* Intercalators and topoisomerases:
end of G1, during S and early G2
(DNA strands are being used for
synthesis of DNA)
* Mitotic inhibitors: M phase- vinca
early -taxoids late
* Alkylating agents: attack DNA,
single or double stranded throughout the whole cell cycle

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5
Q

DNA Alkylating and Crosslinking Agents:
What are the features?

A

o Highly electrophilic compounds: react with nucleophilic groups on DNA (mainly the N-7 position of deoxyguanylates) → strong covalent bonds
* 2 alkylating groups → covalent cross-linking of adjacent strands of DNA
(inter-strand cross-linking) → disrupted replication/transcription → cell tries
unsuccessfully to repair → cell cycle arrest → apoptosis
o Organoplatinum: binding to adjacent guanine nucleotides on a single strand of
DNA → intra-strand DNA cross-linking
o Higher effect in tumour cells: divide more rapidly (high DNA synthesis)
o All phases of the cell cycle are susceptible (not cell cycle specific) but they are more toxic in late G1 or S phases (DNA is unwinding and exposing nucleotides)

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6
Q

Issues with DNA Alkylating and Crosslinking Agents? (3)

A

o Most alkylating agents require chemical or enzymatic activation
o Poor selectivity: react with nucleophilic groups on proteins as well
o Can damage DNA of healthy cells: intrinsically mutagenic and carcinogenic!

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7
Q

Five main groups that form DNA Alkylating and Crosslinking Agents? (for info?) he skipped

A
  1. Nitrogen Mustards
  2. Nitrosoureas
  3. DNA methylators
  4. Organoplatinum complexes (metallating agent)
  5. Miscellaneous DNA alkylators
    All frequently include in combination therapy
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8
Q

DNA Alkylating and Crosslinking Agents:
Effects of alkylating agents on DNA

A
  • Crosslinked guanine bases =DNA replication impaired
  • Guanine N7 alkylation can give an enol
    tautomer which can bind to thymidine = Mismatching of bases- leading to defective coding of proteins
  • Guanine N7 alkylation can cause cleavage of imidazole ring = Excision of guanine residue leading to DNA breakage
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9
Q

DNA Alkylating and Crosslinking Agents
1. Nitrogen Mustards
Structure:

A

R= can be either aliphatic or aromatic; prime determinant of chemical reactivity, oral bioavailability, nature/extent of adverse effects

Chlorine atoms: decrease N basic strength through a strong negative inductive effectunionised drug predominates at physiologic pH → lone pair of electrons on N allows for the formation of the highly electrophilic aziridinium ion, which is
the reactive DNA-destroying intermediate

e.g. Chlormethine Chlorambucil Cyclophosphamide

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10
Q

Nitrogen Mustards: MoA

A
  1. Intramolecular nucleophilic displacement
  2. Highly electrophilic azirdinium ion
  3. Mono-alkylation
  4. Repeat for the second Cl

Aziridinium ion (reactive 𝝱-carbon)
-strained three membered ring
-strong negative inductive effect of the cationic nitrogen

Mono-alkylated
lone pair on the mustard N is regenerated

Di-alkylation (bifunctional) (guanine N-7): cross-linking between DNA chains or within same chain → DNA strands cannot separate nor replicate, transcription of DNA to RNA is halted

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11
Q

DNA Alkylating and Crosslinking Agents
Nitrogen Mustards: the R group is
important

A
  • (Chlormethine) CH3 → electrons to the amine → enhances N nucleophilicity → very reactive (tumour and healthy cells) with unpaired DNA and other cell
    nucleophiles
    (SH, OH and NH of amino acids, and H2O body) → no tissue or cell specificity → increased risk of serious adverse effects and use-limiting toxicity Too reactive for oral route
  • (Chlorambucil) Phenyl → stabilise the lone pair through resonance →
    significantly slows the rate of intramolecular nucleophilic
    attack, aziridinium ion formation, and DNA alkylation. Reactivity sufficiently controlled to permit oral administration, attenuate the severity of adverse effects, enhanced tissue selectivity
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12
Q

Nitrogen Mustards: Cyclophosphamide
Is what type of drug

A

Chiral prodrug: requiring activation by metabolic and nonenzymatic processes

See mechanism on slide

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13
Q

DNA Alkylating and Crosslinking Agents
Nitrogen Mustards: Cyclophosphamide
Toxic effects?

A
  • Most common alkylating agent in cancer chemotherapy, oral administration (or i.v.), for leukaemias, limphomas, sarcoma, solid tumours
  • Metabolic activation in the liver: lowered GI toxicity and less non-specific toxicity

Toxic effects:
* CYP3A4/CYP2B6: inactivate cyclophosphamide by N-dechloroethylation → chloroacetaldehyde formed → electrophilic alkylates Cys residues of critical cell proteins→ highly nephrotoxic and neurotoxic
* Acrolein: very electrophilic/highly reactive species→ generated in liver, readily conjugates with GSH→ delivered to the bladder for excretion → extensive
damage to cells of the kidney and bladder. If low GSH → acrolein will be attacked by the SH of bladder cell Cys residues → haemorrhagic cystitis

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14
Q

Nitrogen Mustards: Cyclophosphamide
To minimise the risk of haemorrhagic cystitis what is given?

A

Mesna as adjuvant therapy
(active sylfhydryl reagent)

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15
Q

DNA Alkylating and Crosslinking Agents
Nitrosoureas: MoA

A

Chloroethyl-containing nitrosoureas (CNUs)
Decompose spontaneously in the aqueous environment of the cell → active species…

Cross-linking of N1-Guanine-N3 Cytosine
Alkylatkion with O6 guanine
Carbamoylation of Lys residues

Highly lipophilic drugs → cross BBB → treat Brain tumour

See Mechanism on slide

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16
Q

DNA Alkylating and Crosslinking Agents:
DNA methylators: triazenes (temozolomide and dacarbazine) and procarbazine

Why does alkylation disrupt DNA?

A

Prodrug: after metabolic oxidation (CYP450), generate a reactive methyldiazonium ion → DNA/RNA methylation (guanine N-7 or O6)

  • Alkylation results in abnormal H-bonding
  • O6-methyl or methyl N-7 guanosine, → alkyl group disrupts inter-strand hydrogen bonding, destabilizing DNA leading to cell death.

IV administration, used in combination therapies for melanomas and sarcomas

17
Q
A
18
Q

Intercalating Agents
Examples?
Structure?
Features?

A
  • Mainly antibiotics of microbial origin: doxorubicin, daunorubicin, bleomycin, etc
  • Act in late G1, S and early G2 phases (DNA strands used for DNA synthesis)
  • Planar aromatic or heteroaromatic ring system: insert into the space between successive nucleotide base pairs disrupting the double Helix of DNA → inhibit the enzymes involved in the replication and transcription processes,
    impairing cell division and triggering apoptosis

Binding reversible: stabilised by hydrophobic interactions (pi-stacking) between the opposing aromatic rings of the drug & adjacent DNA bases
Sugar amino group: essential for activity interacts with DNA (H-bond) May
interact/inhibit topoisomerase
enzymes (DNA unwinding/replication)

18
Q

Intercalating Agents
Synthetic drugs: rationally designed Doxorubicin analogues- Mitoxantrone

A
  • Simplified anthracycline analogue
  • No sugar ring: easy to synthetise (amino group still present)
  • Less active than doxorubicin
  • Less cardiotoxic than doxorubicin :sugar ring: thought to be responsible for cardiotoxicity
  • For leukaemia, lymphomas, advanced breast cancer

Pharmacophoric features:
1. Overlapping planar region
(planar acridine system)
(intercalation)
2. Sugar amino (Dox) and NH (Mito) in
good alignment
3. OH groups in similar position
4. The scaffold in mitoxantrone contains the planar ring system and positions the OH and NH similarly to doxorubicin

19
Q

DNA Alkylating and Crosslinking Agents

  1. Organoplatinum complexes (metallating agents)
    Examples?
A

Cisplatin, Carboplatin, Oxaliplatin

Central Pt with 2 EWGs and 2 ammonia
ligands: neutral and unreactive structure
Pt: electron-deficient metal reacts with
electron-rich DNA nucleophiles

-Bifunctional: accept electrons from two DNA nucleophiles
-Intra-strand cross-links AND Inter-strand cross-linking

1.(Cisplatin is) Neutral and unreactive
2. Inside cells: low [Cl-] → water is (abundant) displaces 1 or both Cl
3. Positively charged, reactive compounds
4. Covalent Pt-DNA links

20
Q

Topoisomerase inhibitors

A

Topoisomerase I (topI): cuts and re-ligates a single DNA strand
Topoisomerase II𝛼 (topII): cuts and re-ligates a double DNA strand
Cleavage (cut): transesterification reaction. Repair: reverse transesterification

Topoisomerase poisons: stimulate the DNA cleavage reaction BUT inhibit the DNA resealing activity of the enzymes, leaving the DNA irreversibly damaged and unable to replicate

  • Act in late G1, S and early G2 phases (DNA strands used for DNA synthesis)
  • Camptothecins
  • Epipodophyllotoxins
  • Anthracyclines and related anthracenediones (family of Doxorubicin)
20
Q

Topoisomerase inhibitors
What is the role of Topoisomerase in DNA replication?

A
  1. Normal DNA
  2. Supercoiled DNA: no longer accessible to the enzymes
  3. Topoisomerase:
    * Binds
    * Cuts strand
    * Strand rotates
    * Reanneals strand
  4. removal of torsional stress such as unknotting & relaxation
  5. Normal DNA restored
21
Q

Topoisomerase I inhibitors: Camptothecins

A

o Water-insoluble natural conjugated pentacyclic lactones
o MoA: stabilise a covalent DNA–topoisomerase bond at the
point of single-strand breakage; sterically keep topI from catalysing
the DNA re-ligation reaction → NO resealing!!!

  • Binding pocket: in the DNA strand→ revealed only after the normal DNA nicking has occurred→ preferentially bind to the enzyme–DNA complex
22
Q

Topoisomerase II𝛼 inhibitors: Epipodophyllotoxins

A

o Semisynthetic glycosidic derivatives of podophyllotoxin (mayapple plant)

Topoisomerase II principle function:
catalyse the separation of daughter
DNA strands just prior to mitosis

Drug: stabilizes enzyme-DNA complex inhibiting the annealing process → DNA double strand breaks not amenable to repair

23
Q

Antimetabolites

A

Suppress de novo DNA biosynthesis by:
* inhibiting the enzymes involved in the synthesis of the nucleotides
* inhibiting other enzymes required in DNA biosynthesis
* arresting chain elongation: incorporation of false nucleotides into the growing DNA strand

“Super attractive version” of the normal substrate (false substrates)→
* bind enzymes irreversibly or pseudoirreversibly
* nucleotides cannot be synthesised, or DNA polymerisation is blocked
* DNA synthesis is stopped→ apoptosis
Work in S phase of the cell cycle only (synthesis DNA is active)

  • Purine antagonists and Pyrimidine antagonists
  • Antifolates
  • DNA polymerase and chain elongation inhibitors
  • Miscellaneous antimetabolites (DNA methyltransferase, adenosine deaminase
    inhibitors, ribonucleotide reductase inhibitors)
24
Q

Purine antagonists

A

Inhibit synthesis of adenosine monophosphate (AMP and dAMP) and guanosine monophosphate
(GMP and dGMP)

  • inhibit different enzymes involved in purine synthesis (complex effect→ AMP and GMP biosynthesis halted)
  • incorporation of di- (ADP, dADP, GDP, dGDP) and triphosphate (ATP, dATP, GTP,
    dGTP) generated within the tumour cell into DNA and RNA→inhibits further
    strand elongation →cleavage, cell-cycle arrest and apoptosis

Drugs: 6-thiol analogues of purine
6-Mercaptopurine 6-Thioguanine

Two anticancer prodrugs: once converted to the nucleoside monophosphates (cellular enzymes):

25
Q

Purine antagonists

A
  • Both drugs are administered orally and used for the treatment of leukaemias.
    Both are more effective in children than adults
  • Tox: myelosuppression, immunosuppression, GI distress. Methylated (-SCH3) metabolites induce potentially fatal hepatotoxicity requiring drug discontinuation
  • Xanthine oxidase inactivates 6-mercaptopurine (but not thioguanine)
    Allopurinol inhibits xanthine oxidase → increases levels of mercaptopurine nucleoside monophosphate→ co-administered with mercaptopurine increases duration of action and potency.
    Mercaptopurine dose must be cut to 25%-33% of the standard dose to
    avoid serious toxicity

6-Mercaptopurine is usually given with Allopurinol

26
Q

Pyrimidine antagonists:

A

Crucial step DNA synthesis: synthesis of deoxythymidine monophosphate
(dTMP) from deoxyuridine monophosphate (dUMP). Thymidylate synthase catalyses the transfer of a methylene group from the essential cofactor N5,N10-methylene-tetrahydrofolate to dUMP, giving dTMP

27
Q

Pyrimidine antagonists

A

All dTMP synthesis inhibitors: inhibit thymidylate → “thymineless death” in
actively dividing cells→ DNA will fragment, and the cell will die

Most common- 5-Fluorouraclin (5-FU)
* Fluorinated pyrimidine prodrug: must be converted to its deoxyribonucleotide (dFUMP) →binding thymidylate → presence of F (EWG)→ very stable ternary complex formed →cannot
break down, no thymidine-based product formed, no folate cofactor released, thymidylate enzyme
inhibited→ DNA irreversibly damaged
(irreversible inhibitor)

  • Secondary MoA: incorporation of the false triphosphorylated ribonucleotide (5-F-UTP) into RNA, a chemical deal breaker for RNA viability
28
Q

Antifolates

A
  • Purine and Pyrimidine biosynthesis requires a cofactor called folic acid
  • Folic acid derivatives are carriers of
    one carbon units
29
Q

Antifolates: DHFR

A

Dihydrofolate Reductase Inhibitors (DHFR)
* DHFR: vital enzyme in the biosynthesis of the nucleoside thymidine
* Only source of thymidine is the folate
mediated addition of methyl to
deoxyuridine monophosphate
* Inhibition of this step deprives the cell of thymidine and leads to cell death

Methotrexate

30
Q

Methotrexate

A
  • Folic acid antagonist
  • Compete with 7,8-DHF for DHFR
  • DHFR direct inhibition → cellular levels of 7,8-DHF to rise, → feedback (indirect) inhibition of thymidylate synthase
  • NH2-makes difficult the reduction
  • Also inhibits glycinamide ribonucleotide
    (GAR) formyltransferase (synthesis of
    purine)

=DNA synthesis is blocked

31
Q

Methotrexate:
Used to treat??

A

Orally in the treatment of breast, head and neck, and various lung cancers as well as in non-Hodgkin
lymphoma (NHL)
* Tox: lung disease, severe GI adverse effects
* Severe methotrexate toxicity occurs: reduced folate replacement therapy with 5-formyltetrahydrofolate (leucovorin) → generates the folate cofactors needed by DHFR and GAR formyltransferase →continued synthesis of pyrimidine/purine nucleotides in healthy cells
* Cancer cells resistant to methotrexate over time: increased expression of DHFR and other enzyme targets, active cellular efflux by P-gp

32
Q

DNA polymerase and chain elongation inhibitors

A

DNA polymerases catalyse DNA synthesis from the 4 deoxyribonucleotide building blocks

Six halogenated and/or ribose-modified DNA nucleoside analogues are marketed
for the treatment of a wide variety of hematologic cancers and solid tumors

Complex and multifaceted mechanisms;
* Competitive inhibition of DNA polymerase
* Chain Terminators
* Prevent replication of modified DNA

Nucleosides (not active) → actively transported into tumor cells → converted to triphosphorylated nucleotides by specific kinases →incorporated into the growing
DNA chain→ arresting further elongation T
Tumors deficient in the nucleoside transporter: resistant to these anticancers
Secondary MoA: mono and diphosphorylated forms also inhibit the biosynthesis of essential deoxyribonucleotides

33
Q

DNA polymerase and chain elongation inhibitors
Purine analogues

A
  • All drugs (except one) administered IV; excreted predominantly via the kidneys
  • Tox: myelosuppression
  • Resistance: loss of functional nucleoside transporter proteins and deoxycytidine
    kinase enzymes → causes of acquired resistance to DNA polymerase inhibitors

Purine analogues
Fludabarine, Cladribine, Clofarabine\
Halogenated adenosine-based
nucleosides→ transport into
tumor cells→ conversion to the
active triphosphate
nucleotides→ competitive pol
inhibitor, chain terminator +
prevents replication.

Used for leukaemias (IV)

34
Q

DNA polymerase and chain elongation inhibitors
Pyrimidine analogues

A

Cytarabine (Ara C) Gemcitabine Trifluridine

Pyrimidine-based anticancers:
initial phosphorylation to the
monophosphate required→MP→DP→TP (active form)→competitive pol inhibitor,
chain terminator + prevents
replication.

Cytarabine: used for various leukemias (IV)
Gemcitabine: analogue of cytarabine, fewer side effects. Used for pancreatic,
lung, breast cancer (IV)
Trifluridine: only orally administered DNA polymerase inhibitor

35
Q

Mitotic arrest agents

A

Mitotic process depends on the structural and functional viability of microtubules: polymeric heterodimers consisting of of α- and β-tubulin

Tubulin subunits: lie adjacent to one another and roll up to form an open, pipe-like cylinder (microtubule). One end of microtubule is anchored to an organising center (aster); the other end is either growing or shrinking

During cell division: tubulin alternatively polymerize (growth) and depolymerize
(erosion) “dynamic instability.” Polymerization: addition of tubulin dimers to either end of the tubule→ tubular elongation; Depolymerization →structural shortening.
Allow formation of the mitotic spindle, attachment of chromosomes →cell division

36
Q

Mitotic arrest agents
What are the two general chemical classes of mitosis inhibitors?

A
  • Taxanes: e.g. taxol. Bind with high affinity to polymerized microtubules of the mitotic spindle, the interaction is reversible. They bind to 𝝱-tubulin at specific amino acid residues→ inhibit disassembly of the spindle
  • Vinca alkaloids; e.g. vincristine. Bind to the dimers of 𝝰 and 𝝱 tubulin subunits
    preventing the build up of the polymerised tubulin -formation of spindle inhibited

=ALL block M phase of cell cycle

37
Q

Molecular targeted therapeutics:
What is the goal of targeted chemotherapy?
Examples of new chemotherapy?

A

“Traditional” cancer drugs target DNA (cytotoxic drugs). Major problems: dose limiting side effects, resistance, poor selectivity, patient compliance, QoL In the last 20 years: better understanding of the molecular biology of cancer has greatly increased→ targeting proteins rather than DNA→ greater
structural variety→ potentially more attractive for drug design

Goal of targeted chemotherapy: sidestep the nonspecific toxicity inherent in cytotoxic chemotherapy by directing drugs selectively to the genes or proteins within cancer cells that mediate uncontrolled growth

  • Anti-hormonal therapy
  • Epigenetic inhibitors
  • Kinase inhibitors
  • PARP inhibitors (targeting repairing mechanisms)
  • Proteasome inhibitors
  • Many others