W12 Infectious agents Flashcards
5 Kingdom system
Protista Plantae Animalia Fungi Monera
Three Domain System
Multiple Kingdoms
Modern DNA analysis
Distinctive biological characteristics
All organisms are cells not viruses! Membranes Cellular and genome organisation Single cells Multiple stages –life cycles Multicellular - parasites
Prokaryotic
No nucleus
No mitochondria
Mainly circular DNA
e.g. bacteria
Eukaryotic
Chromosome
Nucleus
Identification essential to understand:
Biology and microbiology Evolution and phylogenetics Pathogenesis of infectious diseases Life cycles Accurate diagnosis Effective treatment Public health control of infectious diseases
Criteria: (Systems of Classification of Pathogenic Organisms)
Structural and functional and metabolic observations
Molecular and genetic and genome analysis
Sub-species classification:
Differentiate pathogenic and non-pathogenic strains
- different disease patterns and clinical outcomes
Linnaean Classification - Hierarchical
Domain - Eubacteria
Kingdom - Procaryote
Phylum - Gram +ve
Class - Actinobacteridae
Order - Actinomyceteales
Family - Mycobacteriaceae
Genus - Mycobacterium
Species - Mycobacterium tuberculosis
Strain - Beijing W1
Isolate - Mr Bloggs (12/02/2004)
Visualisation of Microbes - Viruses
Can be seen with
electron microscope
x100,000
20 – 300nm
Viruses - size
20nm - 300nm
Viruses - structure
DNA or RNA genome
- linear, segmented, single or double stranded genome size 9Kb- 300Kb
- protein nucleocapsid - individual capsomeres Helical, cubic or complex arrangement
No cytoplasm
Enveloped or non-enveloped
- may have components derived from host cell
obligate intracellular organism
Virus life cycle
Recognition Attachment Penetration Fusion Uncoating Transcription Protein synthesis Replication Envelopment Budding and release Lysis and release
Common viral infections in the UK - Community
Upper respiratory tract infection - rhinovirus, influenza, RSV
Gastroenteritis e.g.
Norovirus (SRSV), adenovirus, rotavirus
Rashes e.g. varicella zoster virus (chickenpox), measles
Meningitis e.g. enterovirus
Hepatitis virus e.g. HepB
Human Papilloma virus (HPV) - genital warts
Common viral infections in the UK - Healthcare-associated Infection (Hospital Acquired)
Norovirus, flu
adenovirus
Non-enveloped
DNA virus
What virus causes muco-cutaneous lesions ?
Human Herpes simplex Type 1
Herpes viruses
Icosahedral nucleocapsid
Envelope
Influenza virus
e.g. H3N2
Surface Haemagglutinin
Enveloped pleomorphic Segmented RNA genome Mutation and recombination Epidemics and pandemics Vaccine component H and N
Bacteria - size
1/1000th of a mm
0.5 μm to 3 μm
Bacteria - structure
Prokaryotic
Haploid DNA, circular genome
no nucleus
usually have rigid cell wall outside cytoplasmic membrane
no mitochondria
Binary fission
Visualisation of Bacteria
Unstained at x400
Motile bacteria with flagella move rapidly
Non-motile bacteria also move “on the spot”
i.e. Brownian motion
Gram Staining Bacteria
All purple = iodine + crystal violet
G+ purple = alcohol
G- colourless = alcohol
G+ purple = safranin
G- red = safranin
Morphology
cocci, rod/bacilli, coccobacilli, spirochetes
- atypicals e.g. mycoplasma (no cell wall), chlamydia (biphasic)