W11L3 Flashcards

1
Q

10 hallmarks of cancer

A
  1. Sustaining proliferative signalling
  2. Deregulating cellular metabolism
  3. Resisting cell death
  4. Genome instability and mutation
  5. Inducing or accessing vasculature
  6. Activating invasion and metastasis
  7. Tumor-promoting inflammation
  8. Enabling replicative immortality
  9. Avoiding immune destruction
  10. Evading growth suppressors

Several of these hallmarks are targeting cells that are not part of the tumour, such as “avoiding immune destruction”
- this suggests that there is something other than the tumor cells that are being targetted by signalling pathways

Tumour also consists of supportive cells such as cancer associated fibroblasts (are supportive of the tumor cells), tumour- associated macrophages (are anti-inflammatory so they work against the immune system), and endothelial cells in the vascular (so the tumor has nutrients), such as “tumor-promoting inflammation” and “inducing or accessing vasculature”
- “tumor-promoting inflammation” and “inducing or accessing vasculature” are not tumor specific but are required for cancer progression

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2
Q

Knockdown of Smad4

A

Knockdown of Smad4 affects only a subset of TGF-β-regulated target genes and functions.

SMAD4 was first identified as DPC4 = Deleted in Pancreatic Cancer 4

Some events downstream of TGFβ are SMAD4 independent (possibly due to non-canonical pathways)

When SMAD4 is knocked down, it inactivates growth arrest and migration. But transcription factor programs and EMT (actin reorganization, loss of adherens junction, mesenchymal phenotype) is still active even after SMAD4 knockdown

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3
Q

Signaling modules and genetic programs underlying EMTs induced by TGF-β.

A

Key events in cancer progression and metastasis, which also lead to epithelial-mesenchymal transition:
- desmosome disassembly
- adherens junctions disassembly, leading to cell motility
- cell-matrix remodelling, leading to cell motility
- F-actin remodelling, leading to cell motility
- transitional progenitor cell

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4
Q

Signaling modules and genetic programs underlying EMTs induced by TGF-β.

A

TGFβ can stimulate events via SMADs and non SMADs

Key events in cancer progression and metastasis, which also lead to epithelial-mesenchymal transition:
- desmosome disassembly
- adherens junctions disassembly, leading to cell motility
- cell-matrix remodelling, leading to cell motility
- F-actin remodelling, leading to cell motility
- transitional progenitor cell

But canonical TGFβ can also promote cancer progression through SMAD/canonical signaling

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5
Q

Pathways that promote cancer: tumour-promoting effects of TGFβ

A
  • promotes cell proliferation
  • suppresses the immune response
  • promotes angiogenesis
  • promotes cancer stem cell self-renewal
  • promotes the epithelial-to-mesenchymal transition
  • promotes metastasis
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6
Q

Pathways that suppress cancer: tumour-suppressing effects of TGFβ

A
  • inhibits cell proliferation
  • induces apoptosis
  • activates autophagy
  • inhibits growth factors in the tumor stroma
  • inhibits angiogenesis
  • suppresses inflammation
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7
Q

TGFβ has a dichotomous role in…

A

TGFβ has a dichotomous role in tumor progression

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8
Q

Structure of the nucleus

A

Heterochromatin (dark)
- Areas of gene silencing
- most genes are inactive here

Euchromatin (light)
- Areas of gene expression
- genes are active here, easily accessible for transcription factors

Nucleolus
- in the middle, dark
- region for ribosome synthesis
- Involved in cell response to stress
- Assembly of signal recognition particles

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9
Q

Nuclear envelope

A
  • Made up of two phospholipid bilayers (outer and inner)
  • The outer is continuous with the endoplasmic reticulum
  • Structural support on inner surface by the nuclear lamina
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10
Q

Nuclear Lamin

A

Protein meshwork

Mostly made up of lamins and lamin associated proteins
– Connect to the inner nuclear membrane
– Connect to chromatin

LAP – lamin-associated protein
HP1 – heterochromatin protein 1
NPC – nuclear pore complex

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11
Q

Lamins

A

Lamin is a Type of intermediate filament found in the nucleus

  • A-type – all types encoded from alternate splicing of the LMNA gene
  • B-type – encoded by two genes, LMNB1 & LMNB2
  • there are 2 types of Lamin B: Lamin B1 and Lamin B2
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12
Q

Lamin function

A

A-type lamins higher expression in mechanical type tissues –> skeletal and cardiac muscle
- expressed in cells that need rigid nuclei
- for structural integrity

B-type function may be disposable but more highly expressed in undifferentiated cells (embryonic stem cells)
- in cells that can move around, cells that need to migrate
- allows for flexible movement

Lamins provide:
* Structural support and shape to the nucleus
* Associate with chromosomes
* Mechanotransduction
* Regulates gene expression

Lamins are connected to LINC proteins (links between nucleus and cytoplasm)

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13
Q

LINCs

A
  • Linker of nucleoskeleton and cytoskeleton
  • Affects signaling pathways and gene regulation
  • interacts with lamins

Integrin is attached at PM and is attached to the stroma too.
- integrin can signal down a network intracellulary. First via actin, then to nesprin 1/2, all the way to nuclear membrane
- this can trigger lamin and chromatin inside the nucleus to change gene expression

WHY?
- it is another mechanism for rapid signaling from the plasma membrane
- allows it to respond to changes quickly in the environment that are more mechanical based than anything else

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14
Q

Laminopathies

A
  1. Emery-Dreifuss muscular dystrophy
    - striated muscle
    - Mutations in LINC genes inc. LMNA point mutation H222Y
    - Muscle degeneration, weakness and atrophy; Cardiac defect
  2. Dunnigan-type familial partial lipodystrophy
    - adipose tissue
    - Various missense mutations in
    LMNA
    - Adipose tissue redistribution, insulin resistant diabetes mellitus
  3. Charcot-Marie-Tooth disease type 2B1
    - peripheral nerve
    - Recessive mutations in LMNA
    - Motor and sensory neuropathy
    - slight or absent reduction of nerve-
    conduction velocities
  4. Hutchinson-Gilford progeria syndrome
    - progeria phenotype
    LMNA deletion
    - Early onset aging, alopecia, fragile
    skin, atherosclerosis
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15
Q

Lamins in cancer

A

Lamin A or lamin C expression is downregulated in leukemias, lymphomas, breast cancer, colon cancer, gastric carcinoma and ovarian carcinoma
- Reduced levels of A-type lamins are predicted to result in more malleable nuclei, which could facilitate extravasation & invasion of malignant cells through narrow constrictions

Conversely…
- expression of A-type lamins is upregulated in skin and ovarian cancers
- higher lamin levels could support the increased mechanical stress within solid tumors
- changes in lamin expression could modulate cell proliferation, differentiation, epithelial-to mesenchymal transition and migration

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16
Q

Nuclear pores

A

Where heterochromatin is depleted (not found) on nuclear membrane

It is where things will enter or leave the nucleus (for the most part)

Not ubiquitous composition of proteins between cell types, allowing for cell type specific transport

17
Q

What needs to get into the nucleus? What types of movement?

A

What needs to get into the nucleus?
- Nucleotides for DNA synthesis and RNA synthesis
- Transcription factors
- Proteins required for nuclear architecture
- Ions that may help in protein function

What types of movement?
- Passive diffusion – molecules less than 40 kDa and ions
- Facilitated active transport – molecules more than 40 kDa

18
Q

Nuclear pore structure

A

Nuclear pores: Composed of a membrane associated scaffold, central transport channel, cytoplasmic ring, nuclear ring & 8 filaments attached to each ring
- filaments are where the proteins will be trapped. then a signalling process will allow the proteins to funnel through the central channel and into the basket, then into the nucleus

Multi-protein structure, multiple copies of over 30 different proteins

Has many Nucleoporins (NUPs)

Why so many NUPs?
- different proteins between cell types, allow for cell type specific transport
- Some components of the pores change in response to signals

There are many types of nuclear pores, which increases selectivity of what can be brought into the cell

19
Q

Nuclear localization

A

NFAT is a protein that translocates into the nucleus. It is normally localized in the cytoplasm, but it ends up in the nucleus to affect signalling
- NFAT is phosphorylated, which then allows it to interact with importin
- the heterodimer between NFAT and importin alpha will translocate into the nucleus
- inside the nucleus, the NFAT will be released
- NFAT binds to exportins to be released outside of the nucleus

Karyopherins (the name for all proteins involved in importing and exporting):
- soluble carrier proteins that facilitate ACTIVE transport; needs phosphorylation
- exportins (e.g. CRM1) and importins

STEPS:
- Importins bind transcription factors at the NLS (NFAT)
- Interaction between importin and transcription factor leads to nuclear localization
- In the nucleus, the transcription factor is released when Ran-GTP binds to Importin. This leads to translocation of importins back to the cytoplasm. In the cytoplasm Ran-GTP is converted to Ran-GDP by GTPase Activating Proteins (GAPs) leading to release of the importin
- Ran-GDP translocates back into the nucleus where it is converted back to Ran- GTP by guanine exchange factors (GEFs)

20
Q

Brownian affinity gate model

A

macromolecules that do not bind to nucleoporins do not diffuse across the Nuclear Pore Complex
- these macromolecules will bounce of the nuclear pore

Macromolecules that bind to nucleoporins increase their residence time at the entrance of the central tube
- Kap is an importin that can help the macromolecule bind

diffusion across the nuclear pore complex is greatly facilitated